BAC Information

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BAC

Clone NameB6Ng01-062B01
Chromosome4 (Build37)
Map Location 77,740,315 - 77,868,314
singlet/doubletdoublet
Overlap geneLOC100039974
Upstream genenone
Downstream geneLOC100039996, LOC100040026, LOC100040036
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062B01.bB6Ng01-062B01.g
ACCDH882574DH882575
length1,0831,054
definitionDH882574|Mus musculus domesticus DNA, BAC clone: B6Ng01-062B01, 5' end.DH882575|Mus musculus domesticus DNA, BAC clone: B6Ng01-062B01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,867,226 - 77,868,314)(77,740,315 - 77,741,373)
sequence
gaattctttattttttttcaatttttattagatattttcttcatttacat
ttcaaatgctattcctaaagtcccctataccctccgcccaccctgctccc
ctacccaccacttcttggccctgacattcccctgtactgaggcatataaa
gtttgcaagacaaaggggcctctcttcccaatgatggctgactaggccat
cttctgctacatatgcagctagagacaggagctctggggttcctggttag
tttatcttgttgttccatctgtagggttgcagacaccttcagctccttgg
gtactttctctagctcctccattggtgaattccttcttattttacaggtt
atcttcacacagaacatgatggacctgtattgcttcccatgatatggact
gcagggtaagaaaacaaagcccagcctgcctattgttccatgtgcaaatg
tttccctaggtgtttcataattattgtttttcacaagactcaacaagtga
gagtgaggtaaaatttttggaaatagaagtaacccaaatacaagcttgat
tatatataatttgacatttgttcagaatcagcacttttctgccatggaac
aaaagttaaggggattttactgctttatgccagagcaataaaactccaag
tttgttaaccttttaatatttatacccctaatttttgaaaaccagtatta
cacttaccacagaatatttttaaatgtatattatttagatacaatttaat
ttaagtaatataggtctcttagttagggtttctattcctgcacaacatca
tgaccaaagtgcaagttggggagggaagggtttattcagtttatacttct
acattgctgttcatcaccaaaggaagtcaggacaggaactcatacgggtg
gaacttggaggcaggagtggatgcagaagccctgaggaatagtgcttact
gacttgcttcctctggatgctcagcttgctttcttataggacccagggat
ggcaccacactcaattggtctactttctgatcactaattgagaaaaatgc
ctacgcttggatctcatgaagcttttctcaagg
gaattctatttacgcttctgataagatttggtgttttttgttgtgctgga
aataaaattaaagttcagcatagtctctttggattacggtaccgatttcc
ctagttgtagtggctggagcagcatcccatcccaacagtttttggttcca
aaaccattgtctaggtttagttctgtaccaactcttctgttctccacatg
ttgctgtaatggtagccatttaaataaacattttgataccaaggagcata
atgttgttgactctgttatttaattatgctgttttggctatgcagaatca
ttactggttctacaaagatttttgaattgttctttttctttccatataaa
attccagagagattttgacatgaattaaatgatatttgtaaataactttg
aatagatgaacattacaataagattagtcttcataagtgatataaaattg
aatatgtttttaaatgatttcatgaatattctatatttttctctatgttc
ttttattaaacttttatttatttacactcagattttattcccctcctggt
ctaccttccaactgttccacatcccaatcgtcctccctaccctccccacc
ccgtttctacaaggatgtccccaccatgcacgccctcatgcaccacccca
ccagacctctaacctccctgggctcccagtatcttgagggttagatgcat
cttcactgactgaacatagacctggcctctgctgtatatgtgttcggggc
acatatcagctggtgtatgttgccctccccttcagcttcttccagctttc
ccctaattcaaccacaggggccagcagcttttgtacattggttgggtgca
aatatctgcatctgacctgaaatttactttctaaatacttatttggtttt
gtatatgaaacacatatcattgttttcatagtaagattttcatcttaaca
tattttacctgtagttggtgtgtatgtgcatatgtatgtgtgtatatggt
tgggtggggtagagtgcaatcatggaaggtttttgtgtatatgagtgggg
tata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_77867226_77868314
seq2: B6Ng01-062B01.b_46_1128 (reverse)

seq1  CCTTGAGAAAAAGCCTCTATGAGATCCAGCTGTAAGGCA-TTTTCTCAAT  49
      ||||||| |||||| || ||||||||||   || ||||| ||||||||||
seq2  CCTTGAG-AAAAGCTTC-ATGAGATCCAAGCGT-AGGCATTTTTCTCAAT  47

seq1  TAGTGATCAAGACAGTAGGCCCATTGAGTGTGGTGCCATCCCTGGGTTCT  99
      |||||||| ||| ||||| || ||||||||||||||||||||||||| ||
seq2  TAGTGATC-AGAAAGTAGACCAATTGAGTGTGGTGCCATCCCTGGGTCCT  96

seq1  ATAAGAAAGCAAGCTGAGCAATCCAGAGGAAGCAAGTCAGTAAGCACTAT  149
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATAAGAAAGCAAGCTGAGC-ATCCAGAGGAAGCAAGTCAGTAAGCACTAT  145

seq1  TCCTCCAGGGCTTCTGCATCCACTCCTGCCTCCAAGTTCCACCCCGTATG  199
      |||| |||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCCT-CAGGGCTTCTGCATCCACTCCTGCCTCCAAGTTCCA-CCCGTATG  193

seq1  AGTTCCTGTCCTGACTTCCTTTGGTGATGAACAGCAATGTAGAAGTATAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTGTCCTGACTTCCTTTGGTGATGAACAGCAATGTAGAAGTATAA  243

seq1  ACTGAATAAACCCTTCCCTCCCCAACTTGCACCTTGGTCATGATGTTGTG  299
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACTGAATAAACCCTTCCCTCCCCAACTTGCACTTTGGTCATGATGTTGTG  293

seq1  CAGGAATAGAAACCCTAACTAAGAGACCTATATTACTTAAATTAAATTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATAGAAACCCTAACTAAGAGACCTATATTACTTAAATTAAATTGT  343

seq1  ATCTAAATAATATACATTTAAAAATATTCTGTGGTAAGTGTAATACTGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAATAATATACATTTAAAAATATTCTGTGGTAAGTGTAATACTGGT  393

seq1  TTTCAAAAATTAGGGGTATAAATATTAAAAGGTTAACAAACTTGGAGTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAAATTAGGGGTATAAATATTAAAAGGTTAACAAACTTGGAGTTT  443

seq1  TATTGCTCTGGCATAAAGCAGTAAAATCCCCTTAACTTTTGTTCCATGGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTCTGGCATAAAGCAGTAAAATCCCCTTAACTTTTGTTCCATGGC  493

seq1  AGAAAAGTGCTGATTCTGAACAAATGTCAAATTATATATAATCAAGCTTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGTGCTGATTCTGAACAAATGTCAAATTATATATAATCAAGCTTG  543

seq1  TATTTGGGTTACTTCTATTTCCAAAAATTTTACCTCACTCTCACTTGTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGGTTACTTCTATTTCCAAAAATTTTACCTCACTCTCACTTGTTG  593

seq1  AGTCTTGTGAAAAACAATAATTATGAAACACCTAGGGAAACATTTGCACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGTGAAAAACAATAATTATGAAACACCTAGGGAAACATTTGCACA  643

seq1  TGGAACAATAGGCAGGCTGGGCTTTGTTTTCTTACCCTGCAGTCCATATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACAATAGGCAGGCTGGGCTTTGTTTTCTTACCCTGCAGTCCATATC  693

seq1  ATGGGAAGCAATACAGGTCCATCATGTTCTGTGTGAAGATAACCTGTAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAAGCAATACAGGTCCATCATGTTCTGTGTGAAGATAACCTGTAAA  743

seq1  ATAAGAAGGAATTCACCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAGGAATTCACCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCT  793

seq1  GAAGGTGTCTGCAACCCTACAGATGGAACAACAAGATAAACTAACCAGGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGTCTGCAACCCTACAGATGGAACAACAAGATAAACTAACCAGGA  843

seq1  ACCCCAGAGCTCCTGTCTCTAGCTGCATATGTAGCAGAAGATGGCCTAGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGAGCTCCTGTCTCTAGCTGCATATGTAGCAGAAGATGGCCTAGT  893

seq1  CAGCCATCATTGGGAAGAGAGGCCCCTTTGTCTTGCAAACTTTATATGCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATCATTGGGAAGAGAGGCCCCTTTGTCTTGCAAACTTTATATGCC  943

seq1  TCAGTACAGGGGAATGTCAGGGCCAAGAAGTGGTGGGTAGGGGAGCAGGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTACAGGGGAATGTCAGGGCCAAGAAGTGGTGGGTAGGGGAGCAGGG  993

seq1  TGGGCGGAGGGTATAGGGGACTTTAGGAATAGCATTTGAAATGTAAATGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCGGAGGGTATAGGGGACTTTAGGAATAGCATTTGAAATGTAAATGA  1043

seq1  AGAAAATATCTAATAAAAATTGAAAAAAAATAAAGAATTC  1089
      ||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATATCTAATAAAAATTGAAAAAAAATAAAGAATTC  1083

seq1: chr4_77740315_77741373
seq2: B6Ng01-062B01.g_66_1119

seq1  GAATTCTATTTACGCTTCTGATAAGATTTGGTGTTTTTTGTTGTGCTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTTACGCTTCTGATAAGATTTGGTGTTTTTTGTTGTGCTGGA  50

seq1  AATAAAATTAAAGTTCAGCATAGTCTCTTTGGATTACGGTACCGATTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATTAAAGTTCAGCATAGTCTCTTTGGATTACGGTACCGATTTCC  100

seq1  CTAGTTGTAGTGGCTGGAGCAGCATCCCATCCCAACAGTTTTTGGTTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTGTAGTGGCTGGAGCAGCATCCCATCCCAACAGTTTTTGGTTCCA  150

seq1  AAACCATTGTCTAGGTTTAGTTCTGTACCAACTCTTCTGTTCTCCACATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATTGTCTAGGTTTAGTTCTGTACCAACTCTTCTGTTCTCCACATG  200

seq1  TTGCTGTAATGGTAGCCATTTAAATAAACATTTTGATACCAAGGAGCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTAATGGTAGCCATTTAAATAAACATTTTGATACCAAGGAGCATA  250

seq1  ATGTTGTTGACTCTGTTATTTAATTATGCTGTTTTGGCTATGCAGAATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTTGACTCTGTTATTTAATTATGCTGTTTTGGCTATGCAGAATCA  300

seq1  TTACTGGTTCTACAAAGATTTTTGAATTGTTCTTTTTCTTTCCATATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGGTTCTACAAAGATTTTTGAATTGTTCTTTTTCTTTCCATATAAA  350

seq1  ATTCCAGAGAGATTTTGACATGAATTAAATGATATTTGTAAATAACTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGAGAGATTTTGACATGAATTAAATGATATTTGTAAATAACTTTG  400

seq1  AATAGATGAACATTACAATAAGATTAGTCTTCATAAGTGATATAAAATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATGAACATTACAATAAGATTAGTCTTCATAAGTGATATAAAATTG  450

seq1  AATATGTTTTTAAATGATTTCATGAATATTCTATATTTTTCTCTATGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTTTTTAAATGATTTCATGAATATTCTATATTTTTCTCTATGTTC  500

seq1  TTTTATTAAACTTTTATTTATTTACACTCAGATTTTATTCCCCTCCTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTAAACTTTTATTTATTTACACTCAGATTTTATTCCCCTCCTGGT  550

seq1  CTACCTTCCAACTGTTCCACATCCCAATCGTCCTCCCTACCCTCCCCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTCCAACTGTTCCACATCCCAATCGTCCTCCCTACCCTCCCCACC  600

seq1  CCGTTTCTACAAGGATGTCCCCACCATGCACGCCCTCATGCACCACCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTTCTACAAGGATGTCCCCACCATGCACGCCCTCATGCACCACCCCA  650

seq1  CCAGACCTCTAACCTCCCTGGGCTCCCAGTATCTTGAGGGTTAGATGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCTCTAACCTCCCTGGGCTCCCAGTATCTTGAGGGTTAGATGCAT  700

seq1  CTTCACTGACTGAACATAGACCTGGCCTCTGCTGTATATGTGTTCGGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTGACTGAACATAGACCTGGCCTCTGCTGTATATGTGTTCGGGGC  750

seq1  ACATATCAGCTGGTGTATGTTGCCCTCCCCTTCAGCTTCTTCCAGCTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCAGCTGGTGTATGTTGCCCTCCCCTTCAGCTTCTTCCAGCTTTC  800

seq1  CCCTAATTCAACCACAGGGGCCAGCAGCTTTTGTACATTGGTTGGGTGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAATTCAACCACAGGGGCCAGCAGCTTTTGTACATTGGTTGGGTGCA  850

seq1  AATATCTGCATCTGACCTGAAATTTAC-TTCTAAATACTTATTTGGTTTT  899
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AATATCTGCATCTGACCTGAAATTTACTTTCTAAATACTTATTTGGTTTT  900

seq1  GTATATGAAAACACATATCATTGTTTTCATAGTAAGATTTTCATCTTAAC  949
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATG-AAACACATATCATTGTTTTCATAGTAAGATTTTCATCTTAAC  949

seq1  AATATCTTACCTGTTAAGTTGGTGTGTATGTGCATATGTATGTGTGTATA  999
       |||| ||||||||  ||||||||||||||||||||||||||||||||||
seq2  -ATATTTTACCTGT--AGTTGGTGTGTATGTGCATATGTATGTGTGTATA  996

seq1  TGTTTGTGTGTGTTAAGAGTGCATACAT-GTAGGTTTTTGTGTTTAGATT  1048
      || ||| ||| | | ||||||||  ||| | |||||||||||| ||   |
seq2  TGGTTGGGTGGGGT-AGAGTGCAATCATGGAAGGTTTTTGTGTATA---T  1042

seq1  GAGT-GGGTATA  1059
      |||| |||||||
seq2  GAGTGGGGTATA  1054