BAC Information

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BAC

Clone NameB6Ng01-062E03
Chromosome4 (Build37)
Map Location 145,729,801 - 145,730,826
singlet/doubletsinglet
Overlap geneLOC433791
Upstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790
Downstream geneRex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062E03.bB6Ng01-062E03.g
ACCDH882712DH882713
length1,2901,034
definitionDH882712|Mus musculus domesticus DNA, BAC clone: B6Ng01-062E03, 5' end.DH882713|Mus musculus domesticus DNA, BAC clone: B6Ng01-062E03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctccagtgaattttaagatgatatttcttgttaaaggattatctc
attcatttcatttataatgttgctctactgtttgaaatatttgttgattt
gtcagactgatgttgtgggtactgcatttatcacatacaaaatacttgta
aggtttttctttaaatgtataaattatctgattctcagtctgcctttatt
agtaaagcatttatcacattcactgcatttttgtaaattttctctactgt
atgaattctctgatgcattctcagactaagtttgtgggaaaatcatttgt
cacattgactgcatttgtaaggcttctttaatgtatgatttctgtgatta
aaaacaagataggatttctgggcaaaacatttgtcacattcaatacattt
gtaagaattctcccctgtatgagttctctgatgccatctgactttctcag
taaagctttgtcacattcactacatttgtaaggtttctctcctgtatgaa
ttctctgatgaattatcagactgcattttttaataaaacatttgccacat
tcactacatttgtaaggtttctctcctgtatgaaatctctgatgaatcct
caaactggattttttagtaaagcatttgtcacattcactacatttgtaag
gtttctctcctgtatgaattctctgatgaattctcagacagccattttca
gtaaaggatttgtcacattcattacatttgtaaggtttctctcctgtatg
aattatctgatgccttctcagactgtgtttgtcagtaaagcatttgtcgc
attcattgcatttgtaagattctctcctgaatgaattttctgatgaatac
taagatggcattgttgggtaaagcatttgtcacattcactgcatttgtac
agtttctctcctgtatgattctctgatgaatactaagatgtgattttcgg
gtaaagcatttgtcacattcactgcatttataaggttctctcctgtatga
attctctgatgccttctcagactgtttttctcagtaaaacatttgtcaca
ttcactacatttgtaaggttctctcctgcatgaaattctatgatgaactc
tcagagagcttgtgggtagcatttgtcacattcccacattgtagattcct
ctcctgcatgaattcatgaggaactccgaagcttgtcagaaagcatgtgt
gcgcaatctacatttgagttcctctgcggatctatgagatgaaatctaag
tgcattggtcgatagagactgtgtaacaacctcacgtacg
gaattcatacaggagagaaaccctacaaatgtagtgaatgtgacaaatcc
tttactgaaaatggctgtttgagaattcatcagagaattcatacaggaga
gaaaccttacaaatgcactgaatgtgacaaatgctttactttcaaaggca
gtctgaggattcatcagagaattcatacaggagagaaaccttacaaatgc
actgaatgtgacaaatcctttactgaaaagggcaaactgagaattcatca
gagaattcatacaggagagaaaccttacaaatgtagtgaatgtgacaaat
gctttactgaataaggccatcagagaatttatacaggagagataccttac
aaatagtttgtatgtgacaaatacaatacaatgtcagtctgagaaatcat
cagtttttaatacagtagagaatatttataaatgaagtgaacgagacaat
cctttaccaagatatatcatcttaaaaatcattagagaatacttacagaa
gagaaacttttcaattatattgaaggtatgaatcctttactcttggccta
tttcctagaatgttaacagtgaatacttacaggatacaaacttaactcat
gcattgtatgaagaaatatctttgacttcatttcaggtcaaagagaatat
ctaataactttttaggggaaagtatttctgttggggaaagtgtggcctgt
gttttattcacgttctattcttgacaattgaggctccacactagagaatt
agtatgattatgaaaatcatgtgaaaactttcatgcaatgttcaaatctt
aaataatgtcaactattttttgcttgaagaaactctgaaaatgtaaaaat
gtagaaagcttttcatgacacctttttacctgttcacccttaaatgttac
aagatgaagacagttgggaagtgaggagatatattgtgtacacattcatg
agacagaaataatccatttcaaaaggaactatttaagttttatgcagtct
caaatatctaataaactggtaacattctgttatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145729801_145730826
seq2: B6Ng01-062E03.g_91_1101 (reverse)

seq1  AATATACAGAATGTTACCAGTTTTATTAGATATTTTGAGGACTGCATTAA  50
      |||| ||||||||||||||| ||||||||||| ||||| |||||||| ||
seq2  AATA-ACAGAATGTTACCAG-TTTATTAGATA-TTTGA-GACTGCATAAA  46

seq1  AGACCTTAAATAGTTTCCTTTTGAAATGGATTATTTCTGTCTCAATGAAT  100
      |   ||||||||| ||||||||||||||||||||||||||||| ||||||
seq2  A---CTTAAATAG-TTCCTTTTGAAATGGATTATTTCTGTCTC-ATGAAT  91

seq1  GTGTTACACAATAATATCTCCTCACTTCCCAACTTGTCTTCATCTTGTAA  150
      ||| |||||||| |||||||||||||||||||| ||||||||||||||||
seq2  GTG-TACACAAT-ATATCTCCTCACTTCCCAAC-TGTCTTCATCTTGTAA  138

seq1  CATTTAAGGGTGAACAAGTAAAAAGGTATCATGAAAAGCTTTCTACATTT  200
      |||||||||||||||| |||||||||| ||||||||||||||||||||||
seq2  CATTTAAGGGTGAACAGGTAAAAAGGTGTCATGAAAAGCTTTCTACATTT  188

seq1  TTACATTTTCAGAGTTTCTTCAAGCAAAAAATAGTTGACATTATTTAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTTCAGAGTTTCTTCAAGCAAAAAATAGTTGACATTATTTAAGA  238

seq1  TTTGAACATTGCATGAAAGTTTTCACATGATTTTCATAATCATACTAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACATTGCATGAAAGTTTTCACATGATTTTCATAATCATACTAATT  288

seq1  CTCTAGTGTGGAGCCTCAATTGTTGTCAAGAATAGAACGTGAATAAAACA  350
      |||||||||||||||||||   ||||||||||||||||||||||||||||
seq2  CTCTAGTGTGGAGCCTCAA---TTGTCAAGAATAGAACGTGAATAAAACA  335

seq1  CAGGCCACACTTTCCCCAACAGAAATACTTTCCCCTAAAAAGTTATTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCACACTTTCCCCAACAGAAATACTTTCCCCTAAAAAGTTATTAGA  385

seq1  TATTCTCTTTGACCTGAAATGAAGTCAAAGATATTTCTTGATACAATGCA  450
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TATTCTCTTTGACCTGAAATGAAGTCAAAGATATTTCTTCATACAATGCA  435

seq1  TGAGTTAAGTTTGTATCCTGTAAGTATTCACTGTTAACATTCTAGGAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTAAGTTTGTATCCTGTAAGTATTCACTGTTAACATTCTAGGAAAT  485

seq1  AGGCCAAGAGTAAAGGATTCATACCTTTGATATAATTGAAAAGTTTCTCT  550
      |||||||||||||||||||||||||||  |||||||||||||||||||||
seq2  AGGCCAAGAGTAAAGGATTCATACCTTCAATATAATTGAAAAGTTTCTCT  535

seq1  TCTGTAAGTATTCTCTAATGATTTTTAAGATGATATATCTTGGTAAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAGTATTCTCTAATGATTTTTAAGATGATATATCTTGGTAAAGGA  585

seq1  TTGTCTCGTTCACTTCATTTATAAATATTCTCTACTGTATTAAAAACTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCGTTCACTTCATTTATAAATATTCTCTACTGTATTAAAAACTGA  635

seq1  TGATTTCTCAGACTGACATTGTATTGTATTTGTCACATACAAACTATTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCTCAGACTGACATTGTATTGTATTTGTCACATACAAACTATTTG  685

seq1  TAAGGTATCTCTCCTGTATGAATTCTCTGATGGCCTTTTTCAGTAAAGCA  750
      ||||||||||||||||||| ||||||||||||||||| ||||||||||||
seq2  TAAGGTATCTCTCCTGTATAAATTCTCTGATGGCCTTATTCAGTAAAGCA  735

seq1  TTTGTCACATTCACTACATTTGTAAGGTTTCTCTCCTGTATGAATTCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCACATTCACTACATTTGTAAGGTTTCTCTCCTGTATGAATTCTCT  785

seq1  GATGAATTCTCAGTTTGCCCTTTTCAGTAAAGGATTTGTCACATTCAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATTCTCAGTTTGCCCTTTTCAGTAAAGGATTTGTCACATTCAGTG  835

seq1  CATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGAATCCTCAGACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGAATCCTCAGACT  885

seq1  GCCTTTGAAAGTAAAGCATTTGTCACATTCAGTGCATTTGTAAGGTTTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGAAAGTAAAGCATTTGTCACATTCAGTGCATTTGTAAGGTTTCT  935

seq1  CTCCTGTATGAATTCTCTGATGAATTCTCAAACAGCCATTTTCAGTAAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTATGAATTCTCTGATGAATTCTCAAACAGCCATTTTCAGTAAAG  985

seq1  GATTTGTCACATTCACTACATTTGTA  1026
      ||||||||||||||||||||||||||
seq2  GATTTGTCACATTCACTACATTTGTA  1011