BAC Information

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BAC

Clone NameB6Ng01-062G04
Chromosome4 (Build37)
Map Location 88,436,569 - 88,559,875
singlet/doubletdoublet
Overlap geneOTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4, Ifna1, Ifne1
Upstream geneMllt3, BC057079, Ptplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270
Downstream geneLOC100040617, Mtap, LOC625574, Cdkn2a, Cdkn2b, LOC664785, Dmrta1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062G04.bB6Ng01-062G04.g
ACCDH882800DH882801
length1,1001,098
definitionDH882800|Mus musculus domesticus DNA, BAC clone: B6Ng01-062G04, 5' end.DH882801|Mus musculus domesticus DNA, BAC clone: B6Ng01-062G04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,558,750 - 88,559,875)(88,436,569 - 88,437,676)
sequence
gaattctataaaactaaaattatgtaaatgatggacctgtctgtacatac
agtcctactgaaaaggcacttgagaaacctaagtgatattatttcatttt
cttttctatacatcatcctttaaaaaaaaactctttttaaaaacctcata
ttgtaatttttccctaaaattcacatggctgagttctttagtacaatttg
aagtatgtgtttttgtttctatgagttaatttttatctgctctgtgtgta
tgtgtgtgcgcgcatatacttcccttcctccttggagattctcctctcat
caggatatttgtatatgtaatgagctacacagcatgtggcattgatacgt
ggagttcttatgtagattttgagcccttctagtgacctgcatattatcat
tgcccatatctaagaaatggtattttttccactataacctacagatacat
gtacgcgtgtataatatcacacaatatctgtgtgtgtgtgtgtgcatatg
cctttttgcagcccagcaggtgcaaggcaacacacatctgacttctatca
gttagggagtagctttaagcacatcctgtgaaattgtctgttcccacaag
taatcccaacacattcagtaaatgttcttcccccccccccccacagttat
gttcttgattggaccacaaatttttccataatgctgtacttaaaaactag
tacattctgctcttcgtccataatcatctgcaactccccataccagcttt
cttaggacaactattttaaacattaaaactggaataaactatattccagt
tctagaaagagtcactgtgtgcggctctgccagctttgtagtcaccatgg
ttgagttggttcccttccttatctctgcataggaagtacagcagtgtagc
tagctctctcctgctccatgtgtccaggacatgtgagcactgtttctaga
gtgcctcagtcagtgtttacaaaggaaaacagactgctagtttcaaagta
aaattagtttggattttattggatattcacactatagagactgagacatc
tttaggaatgaattataatggacatgtacctcaggttactgccagcagct

gaattcagaatgggagagaaaactcgtgctgacttacagagggagggttg
atgtcagaaggagcagagaggggcacacttgacagaagccctccctgtgg
ggggctgagcaagaggccatctacccgaaaatgcccttttggtgagggtg
acttttgagagatggaaacaggggggaggggcctggccaggaggaggagc
gccaacttcctggctgagaggtccaactgctccctgctcagcagagctcc
tgagaggagaggggcaagaccatactgtctgtcctctctctggaactgtc
tgcctgttggggcccagctctcctctctgccaactccacttccttcttct
ccactcgcgttagagagctggaagggtctggcgggccacccaaacgcacc
aagatgcgaaacaaacaaacgaaaggaaaccgaaccaaaggagaccaaac
caaacccagcccagccaaaccaaaacgctgctctctgggctttggagcct
tcccggttccccgaaaacatgtcccctggcccaccaattccgtctgggtt
caattctcaaggcgcgatggatggggtacagtcctgtacgcgaaggggcc
cgggagagaggcaggagacactccctgcctgcccggagtcgcgcgctgaa
cggggcgaacggcctccgcaggcgcccgctgctgccctccggtggcccgc
gccctctgctgctgctcctggcctcagaagtcgcgtccagcgtccagcgc
agcacaggcagtcagcgagcaagagcccgaagctccgagtgaactattaa
agcagcaaactccaggctcaatgggaaggcggccttgccctcgcgctccc
cctgcaggccagccccgcaatcgtcaggcttcagcatgctgcctgtgcat
ctattcctggtgggaggggtgatgctgagctgcagcccagccagctcact
tgattctggtaaatctgggagcctgcacctggagcgcagcgaaacgcgcg
cttctagcagagcttcgaagcgtgccgggtcaccagtgctgcggacaggg
acgatttcccatgttcctgaggaggactacttccaccgatgactctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_88558750_88559875
seq2: B6Ng01-062G04.b_42_1141 (reverse)

seq1  AGCTGCTGGCAGTAAAACCCCTTGAGGTACATGGTCCATTTATAATTTTC  50
      |||||||||||||||     | |||||||||| ||||| ||||||  |||
seq2  AGCTGCTGGCAGTAA-----CCTGAGGTACAT-GTCCA-TTATAA--TTC  41

seq1  ATATCCTAAAAGGATTTTTTCTTTTGTGTCTCTTTATTAGTGTGAATATC  100
      || |||||||  |||       | |  ||||||    |||||||||||||
seq2  AT-TCCTAAA--GAT------GTCTCAGTCTCT---ATAGTGTGAATATC  79

seq1  CAAATAAAATCCAAACTAATTTTTACTTTGAAACTAGCAGTCTGTTTTCC  150
      | ||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  C-AATAAAATCCAAACTAA-TTTTACTTTGAAACTAGCAGTCTGTTTTCC  127

seq1  TTTGTAAACACTGACTTGAGGCCACTCTAGAAACAGTGCTCACATGTCCT  200
      ||||||||||||||| ||||| ||||||||||||||||||||||||||||
seq2  TTTGTAAACACTGAC-TGAGG-CACTCTAGAAACAGTGCTCACATGTCCT  175

seq1  GGACACATGGGAGCAGGAGAGAGCTAGCTACACTGCTGTACTTCCTATGC  250
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGACACAT-GGAGCAGGAGAGAGCTAGCTACACTGCTGTACTTCCTATGC  224

seq1  AGAGATAAGGAAGGGAACCAACTCAACCATGGTGACTACAAAGCTGGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAAGGAAGGGAACCAACTCAACCATGGTGACTACAAAGCTGGCAG  274

seq1  AGCCGCACACAGTGACTCTTTCTAGAACTGGAATATAGTTTATTCCAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGCACACAGTGACTCTTTCTAGAACTGGAATATAGTTTATTCCAGTT  324

seq1  TTAATGTTTAAAATAGTTGTCCTAAGAAAGCTGGTATGGGGAGTTGCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTTTAAAATAGTTGTCCTAAGAAAGCTGGTATGGGGAGTTGCAGA  374

seq1  TGATTATGGACGAAGAGCAGAATGTACTAGTTTTTAAGTACAGCATTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATGGACGAAGAGCAGAATGTACTAGTTTTTAAGTACAGCATTATG  424

seq1  GAAAAATTTGTGGTCCAATCAAGAACATAACTGTGGGGGGGGGGGGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTTGTGGTCCAATCAAGAACATAACTGTGGGGGGGGGGGGGAAG  474

seq1  AACATTTACTGAATGTGTTGGGATTACTTGTGGGAACAGACAATTTCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTACTGAATGTGTTGGGATTACTTGTGGGAACAGACAATTTCACA  524

seq1  GGATGTGCTTAAAGCTACTCCCTAACTGATAGAAGTCAGATGTGTGTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTGCTTAAAGCTACTCCCTAACTGATAGAAGTCAGATGTGTGTTGC  574

seq1  CTTGCACCTGCTGGGCTGCAAAAAGGCATATGCACACACACACACACAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCACCTGCTGGGCTGCAAAAAGGCATATGCACACACACACACACAGA  624

seq1  TATTGTGTGATATTATACACGCGTACATGTATCTGTAGGTTATAGTGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGTGATATTATACACGCGTACATGTATCTGTAGGTTATAGTGGAA  674

seq1  AAAATACCATTTCTTAGATATGGGCAATGATAATATGCAGGTCACTAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACCATTTCTTAGATATGGGCAATGATAATATGCAGGTCACTAGAA  724

seq1  GGGCTCAAAATCTACATAAGAACTCCACGTATCAATGCCACATGCTGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCAAAATCTACATAAGAACTCCACGTATCAATGCCACATGCTGTGT  774

seq1  AGCTCATTACATATACAAATATCCTGATGAGAGGAGAATCTCCAAGGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCATTACATATACAAATATCCTGATGAGAGGAGAATCTCCAAGGAGG  824

seq1  AAGGGAAGTATATGCGCGCACACACATACACACAGAGCAGATAAAAATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAAGTATATGCGCGCACACACATACACACAGAGCAGATAAAAATTA  874

seq1  ACTCATAGAAACAAAAACACATACTTCAAATTGTACTAAAGAACTCAGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATAGAAACAAAAACACATACTTCAAATTGTACTAAAGAACTCAGCC  924

seq1  ATGTGAATTTTAGGGAAAAATTACAATATGAGGTTTTTAAAAAGAGTTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAATTTTAGGGAAAAATTACAATATGAGGTTTTTAAAAAGAGTTTT  974

seq1  TTTTTAAAGGATGATGTATAGAAAAGAAAATGAAATAATATCACTTAGGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAGGATGATGTATAGAAAAGAAAATGAAATAATATCACTTAGGT  1024

seq1  TTCTCAAGTGCCTTTTCAGTAGGACTGTATGTACAGACAGGTCCATCATT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAGTGCCTTTTCAGTAGGACTGTATGTACAGACAGGTCCATCATT  1074

seq1  TACATAATTTTAGTTTTATAGAATTC  1126
      ||||||||||||||||||||||||||
seq2  TACATAATTTTAGTTTTATAGAATTC  1100

seq1: chr4_88436569_88437676
seq2: B6Ng01-062G04.g_68_1165

seq1  GAATTCAGAATGGGAGAGAAAACTCGTGCTGACTTACAGAGGGAGGGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAATGGGAGAGAAAACTCGTGCTGACTTACAGAGGGAGGGTTG  50

seq1  ATGTCAGAAGGAGCAGAGAGGGGCACACTTGACAGAAGCCCTCCCTGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGAAGGAGCAGAGAGGGGCACACTTGACAGAAGCCCTCCCTGTGG  100

seq1  GGGGCTGAGCAAGAGGCCATCTACCCGAAAATGCCCTTTTGGTGAGGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGAGCAAGAGGCCATCTACCCGAAAATGCCCTTTTGGTGAGGGTG  150

seq1  ACTTTTGAGAGATGGAAACAGGGAGGAGGGGCCTGGCCAGGAGGAGGAGC  200
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACTTTTGAGAGATGGAAACAGGGGGGAGGGGCCTGGCCAGGAGGAGGAGC  200

seq1  GCCAACTTCCTGGCTGAGAGGTCCAACTGCTCCCTGCTCAGCAGAGCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACTTCCTGGCTGAGAGGTCCAACTGCTCCCTGCTCAGCAGAGCTCC  250

seq1  TGAGAGGAGAGGGGCAAGACCATACTGTCTGTCCTCTCTCTGGAACTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGAGAGGGGCAAGACCATACTGTCTGTCCTCTCTCTGGAACTGTC  300

seq1  TGCCTGTTGGGGCCCAGCTCTCCTCTCTGCCAACTCCACTTCCTTCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTTGGGGCCCAGCTCTCCTCTCTGCCAACTCCACTTCCTTCTTCT  350

seq1  CCACTCGCGTTAGAGAGCTGGAAGGGTCTGGCGGGCCACCCAAACGCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCGCGTTAGAGAGCTGGAAGGGTCTGGCGGGCCACCCAAACGCACC  400

seq1  AAGATGCGAACCAAACAAACGAAAGGAAACCGAACCAAAGGAGACCAAAC  450
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCGAAACAAACAAACGAAAGGAAACCGAACCAAAGGAGACCAAAC  450

seq1  CAAACCCAGCCCAGCCAAACCAAAACGCTGCTCTCTGGGCTTTGGAGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCAGCCCAGCCAAACCAAAACGCTGCTCTCTGGGCTTTGGAGCCT  500

seq1  TCCCGGTTCCCCGAAAACATGTCCCCTGGCCCACCAATTCCGTCTGGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGGTTCCCCGAAAACATGTCCCCTGGCCCACCAATTCCGTCTGGGTT  550

seq1  CAATTCTCAAGGCGCGATGGATGGCGTACAGTCCTGTACGCGAAGGGGCC  600
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CAATTCTCAAGGCGCGATGGATGGGGTACAGTCCTGTACGCGAAGGGGCC  600

seq1  CGGGAGAGAGGCAGGAGACACTCCCTGCCTGCCCGGAGTCGCGCGCTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAGAGAGGCAGGAGACACTCCCTGCCTGCCCGGAGTCGCGCGCTGAA  650

seq1  CGGGGCGAACGGCCTCCGCAGGCGCCCGCTGCTGCCCTCCGGTGGCCCGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGCGAACGGCCTCCGCAGGCGCCCGCTGCTGCCCTCCGGTGGCCCGC  700

seq1  GCCCTCTGCTGCTGCTCCTGGCCTCAGAAGTCGCGTCCAGCGTCCAGCGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTGCTGCTGCTCCTGGCCTCAGAAGTCGCGTCCAGCGTCCAGCGC  750

seq1  AGCGCAGGCAGTCAGCGAGCAAGAGCCCGAAGCTCCGAGTGAACTATTAA  800
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGGCAGTCAGCGAGCAAGAGCCCGAAGCTCCGAGTGAACTATTAA  800

seq1  AGCAGCAAACTCCAGGCTCAATGGGAAGGCGGCCTTGCCCTCGTGCTCCC  850
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGCAGCAAACTCCAGGCTCAATGGGAAGGCGGCCTTGCCCTCGCGCTCCC  850

seq1  CCTGCAGGCCAGCCCCGCAATCGTCAGGCTTCAGCATGCTGCCTGTGCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGGCCAGCCCCGCAATCGTCAGGCTTCAGCATGCTGCCTGTGCAT  900

seq1  CTATTCCTGGTGGGAGGGGTGATGCTGAGCTGCAGCCCAGCCAGCTCACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCCTGGTGGGAGGGGTGATGCTGAGCTGCAGCCCAGCCAGCTCACT  950

seq1  TGATTCTGGTAAATCTGGGAGCCTGCACCTGGAGCGCAGCGAAACCGCGC  1000
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGATTCTGGTAAATCTGGGAGCCTGCACCTGGAGCGCAGCGAAA-CGCGC  999

seq1  GCTTCCTAGCAGAGCTCCGAAGCGTGCCGGGTCACCAGTGCCTGCGGGAC  1050
      |||| ||||||||||| ||||||||||||||||||||||| |||| ||||
seq2  GCTT-CTAGCAGAGCTTCGAAGCGTGCCGGGTCACCAGTG-CTGC-GGAC  1046

seq1  AGGACCGATTTCCCATGTCCCTGGAAGGAAGGAACTAACATCACACCGAT  1100
      |||  ||||||||||||| ||||  ||||  | ||| || || |||||||
seq2  AGGGACGATTTCCCATGTTCCTG--AGGA--GGACT-ACTTC-CACCGAT  1090

seq1  GACTCTGG  1108
      ||||||||
seq2  GACTCTGG  1098