BAC Information

Click to search

BAC

Clone NameB6Ng01-062J09
Chromosome3 (Build37)4 (Build37)
Map Location 27,328,105 - 27,328,446140,470,026 - 140,470,352
singlet/doubletsingletsinglet
Overlap geneFndc3b
Upstream geneSpata16, LOC665258, Ect2, Aadacl1, LOC100040527, Tnfsf10, Ghsr
Downstream geneE030011K20Rik, Pld1, Tnik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062J09.bB6Ng01-062J09.g
ACCDH882935DH882936
length342987
definitionDH882935|Mus musculus domesticus DNA, BAC clone: B6Ng01-062J09, 5' end.DH882936|Mus musculus domesticus DNA, BAC clone: B6Ng01-062J09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(27,328,105 - 27,328,446)(140,470,026 - 140,470,352)
sequence
tccttctccctgagccaaagtcaggcactttgaatgttctggcactgagc
atctcccagaactttctgaagaccagggtttcctctgatgcttagggaac
gctgggcagaaccaggaccatgtgtttggacttactcattgttgattctc
caagtgttcctggactaattcagtttcatgggggggagggggagttaagt
tttcaagactaactgaaaaaatagtagaagtacaaggcatgactctttga
attttgctttatgacttcattgtgtctgaatctccattctactcttcgca
ggagctaccccctgtgattcctatctaggagtagtacttgaa
gaattccaggttgtcttagtcagggtttctattcctgcacaaacatcatg
acaagaagcaagtgggggaagaaagggtttatttggcttacagttccata
ctgctgttcatcaccaaggaagtcaggactggaactcaagcaggtcagaa
agcaggagctgatacagaggccatggagggattttctttactggcttgct
tctcctggcttgctcagcctgctctcttatagaacccaagactaccagcc
cagagatggttccacccacaagggacctttcccccttggtcactaattga
gaaaatgccttacagttggatctcatggaggcatttcctcaaatgaagct
cctttcagctgtgtcaagctaacacaaaactagccagtacaattgacccc
ttgtcaacttgacacacaaaaacatcactagtaagcctcaacagttagtt
tctcatccatccccaagattaaatacatttaaaagtcccacagtctttac
aaattcttaaaatttcaatctctcttaaaatccaaagtctttacaattaa
aagtctcttaactgtgggcttcactaaaaaacttccatcacgagggaaaa
atatcagggcacagtcacaatcaaaagcaaaaattaatctccaaccatcc
aatgtctgggatccaactcacgatcttctgggctcctccaagggcttggg
tcacttctccagccctgtccattgtagcacacagcttttcctctaggctc
cagatgcctgtactccactgctgctgctcttggtgttcatctcatggtac
tggcatctccaaaatactgcatgaccccttcagtcctgggccatcaattg
caactgaggctgcaacttcaccaatggccttccatggactctcacagtgc
caagcctcagctgctctgtgtgaccccttcatgccttcaaaccagtacca
cttgggtgactctacacattaccagtcctgctgcagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_27328105_27328446
seq2: B6Ng01-062J09.b_50_391 (reverse)

seq1  TTCAAGAACTACTCCTAGAAAGGAAACACACGGGGTAGCTCGTGCGAAGA  50
      |||||| |||||||||||| ||||| |||| |||||||||| ||||||||
seq2  TTCAAGTACTACTCCTAGATAGGAATCACAGGGGGTAGCTCCTGCGAAGA  50

seq1  GTAGAATGGAGATTCAGACACATTGAGGACATAAAGCATAATTAAAAGAG  100
      |||||||||||||||||||||| ||| | ||||||||| |||| ||||||
seq2  GTAGAATGGAGATTCAGACACAATGAAGTCATAAAGCAAAATTCAAAGAG  100

seq1  TAATGCCTTGTACTTCAACTATTTTCTCAGTTTGTCTTGAAAACTTAACT  150
      | |||||||||||||| |||||||| |||||| |||||||||||||||||
seq2  TCATGCCTTGTACTTCTACTATTTTTTCAGTTAGTCTTGAAAACTTAACT  150

seq1  CCCCCTCCCCCCCATGAAACTGAATTAGTCCAGGAACACTTGGAGAATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCCCCCCCATGAAACTGAATTAGTCCAGGAACACTTGGAGAATCA  200

seq1  ACAATGAGTAAGTCCAAACACATGGTCCTGGTTCTGCCCAGCGTTCCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAGTAAGTCCAAACACATGGTCCTGGTTCTGCCCAGCGTTCCCTA  250

seq1  AGCATCAGAGGAAACCCTGGTCTTCAGAAAGTTCTGGGAGATGCTCAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCAGAGGAAACCCTGGTCTTCAGAAAGTTCTGGGAGATGCTCAGTG  300

seq1  CCAGAACATTCAAAGTGCCTGACTTTGGCTCAGGGAGAAGGA  342
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAACATTCAAAGTGCCTGACTTTGGCTCAGGGAGAAGGA  342

seq1: chr4_140470026_140470352
seq2: B6Ng01-062J09.g_83_409 (reverse)

seq1  GAGGAAATGCCTCCATGAGATCCAACTGTAAGGCATTTTCTCAATTAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAATGCCTCCATGAGATCCAACTGTAAGGCATTTTCTCAATTAGTG  50

seq1  ATCAAGGGGGAAAGGCCCCTTGTGGGTGGGACCATCTCTGGGCTCGTAGT  100
      | ||||||||||||| ||||||||||||| |||||||||||||| |||||
seq2  ACCAAGGGGGAAAGGTCCCTTGTGGGTGGAACCATCTCTGGGCTGGTAGT  100

seq1  CTT-GGTTCTATAAGAAAGCAGGCTGAGCAAGCCAGGGGAGGCAAGCCAG  149
      ||| |||||||||||| |||||||||||||||||||| || |||||||||
seq2  CTTGGGTTCTATAAGAGAGCAGGCTGAGCAAGCCAGGAGAAGCAAGCCAG  150

seq1  TAAAGAACATCCCTCCATGGCCTCTGCATCGGCTCCTGCTTTCTGACCTG  199
      ||||||| |||||||||||||||||| ||| |||||||||||||||||||
seq2  TAAAGAAAATCCCTCCATGGCCTCTGTATCAGCTCCTGCTTTCTGACCTG  200

seq1  CTTGAGTTCCAGTCCTGACTTCCTTGGTGATGAACAGCAGTATGGAAGTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTTGAGTTCCAGTCCTGACTTCCTTGGTGATGAACAGCAGTATGGAACTG  250

seq1  TAAGCCGAATAAACCCTTTCCTCCTCAACTTGCTTCTTGGTCCTGATGTT  299
      |||||| ||||||||||||| ||| | ||||||||||| ||| |||||||
seq2  TAAGCCAAATAAACCCTTTCTTCCCCCACTTGCTTCTT-GTCATGATGTT  299

seq1  TGTGCAGGAATAGAAACCCTGACTAAGA  327
      ||||||||||||||||||||||||||||
seq2  TGTGCAGGAATAGAAACCCTGACTAAGA  327