BAC Information

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BAC

Clone NameB6Ng01-063E15
Chromosome4 (Build37)
Map Location 42,830,259 - 42,971,753
singlet/doubletdoublet
Overlap geneLOC433698, BC049635, N28178, Dnajb5
Upstream geneLOC545611, LOC100042524, LOC100042519, LOC100039817, LOC100042536, LOC100039824, LOC100042539, LOC100042544, LOC100039848, LOC100039863, LOC100042555, 1700045I11Rik, LOC100039894, LOC100039909, EG545605, LOC674214, LOC100038965, LOC100039053, LOC100039193, LOC100039374, LOC100039930, LOC100038993, LOC100039939, Ccl19-ps3, Ccl21c, LOC100039323, LOC665845, LOC100039973, LOC100039986, 4933409K07Rik, LOC100039344, LOC100039995, EG623054, Ccl19-ps2, LOC100039331, LOC100039131, LOC100040035, LOC100040048, Il11ra2, LOC665962, LOC545614, 1700008B15Rik, Ccl19, Ccl21b, LOC100039205
Downstream gene1700022I11Rik, Vcp, Fancg, Pigo, Stoml2, B230312A22Rik, Unc13b, 4930417M19Rik, Rusc2, 4833436C18Rik, Tesk1, Cd72, Sit1, Rmrp, LOC622404, E130306D19Rik, Car9, Tpm2, Tln1, Creb3, Gba2, 1110029E03Rik, LOC100039672, LOC100040179, Npr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik, Olfr70, Olfr71, LOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268, Olfr155, Reck, Glipr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063E15.bB6Ng01-063E15.g
ACCDH883429DH883430
length1,140344
definitionDH883429|Mus musculus domesticus DNA, BAC clone: B6Ng01-063E15, 5' end.DH883430|Mus musculus domesticus DNA, BAC clone: B6Ng01-063E15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,830,259 - 42,831,414)(42,971,410 - 42,971,753)
sequence
gaattctgtaactactgaaatattcttcagactgaaggtaaaaggaaaat
gaaggatctgttactggaagacctcatctgtggttattgcttaagagaga
aacagtagccgaagggaacttagaacgttaggaaagaaagaacaggtacc
tttcctctgcaaccgaacgcttggccactgacagcagagactggaagtct
tgtaacagctctgttcctcactgtgtggtcaaatacccaatacatgtgac
gggcatatcttgtctcacaatgtgagcgtgctctccgccagggcatagaa
gggacatgaggtgtctggtcacctggatgcctgcactcaggaagcagaga
tggggatgttgccaccctgtcctcttggattcgtctggcaatggtgctgt
tcacaatcaggatgtgtttttccctctttggtcaaacctttctggaaggt
accattgtagacacattccagatgtgattctaatccaatcaacttgatga
caaagacagcttatcacaagtttatttcacagtgctgggaattgaactca
ggtcctcacacatgctggaaaagtgacctgcaccaggctccatccccagg
ccatgatgaagttttcagtgtatgtggatgtaatatataagacagcaaca
taagaggggagatacaccaaaccatatcaaggtggttttcctaaaagaac
ataacttttaaaaggaagaatgttggagggatcatatcatccaattgtga
gacttcctataaaatatagtgatctacataatgtagtaaaagagaaagac
ccattagcgagacatataggagaagatctacacagtacagtagccaatat
ttgaatttctgtatcagagaacttgaaaagatcttttttcataaagtggt
gtttgttgatgtgacatccttatacaaaaggttaactacatcctaaacct
cacaccacatataaactgatttatagtgggtccagtgtcacagtgcttgt
tgggctgctggaggcctgtggtaggatccttacccagacgagagaacacc
actttctcaaacaaaaaactcaggcgggtgtaatggaatgtgacactaaa
cttataaagctttgagaaatccttggactggaatcaggat
caagaggtcagagcttataggaagaagagttgagcctcagcatatgctaa
ggttgaccggctttcctggggtgcccaggaccctggaaggaggctgacag
tggctctgtgttcctgcctgcaccagggttactgcttctgcgcagaggct
atatttttaaaatactttatttttttcataatactgtcattacaaaaaaa
tacaaaaaactactataaaaacattcaggggcttgtcaaagtgagaaaac
ctaagaaccccaccccaagaccagctgaagcagttttctcccagctcctt
cactattcgacttctatacaactgtgggagtggggtggggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_42830259_42831414
seq2: B6Ng01-063E15.b_46_1185

seq1  GAATTCTGTAACTACTGAAATATTCTTCAGACTGAAGGTAAAAGGAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAACTACTGAAATATTCTTCAGACTGAAGGTAAAAGGAAAAT  50

seq1  GAAGGATCTGTTACTGGAAGACCTCATCTGTGGTTATTGCTTAAGAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGATCTGTTACTGGAAGACCTCATCTGTGGTTATTGCTTAAGAGAGA  100

seq1  AACAGTAGCCGAAGGGAACTTAGAACGTTAGGAAAGAAAGAACAGGTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTAGCCGAAGGGAACTTAGAACGTTAGGAAAGAAAGAACAGGTACC  150

seq1  TTTCCTCTGCAACCGAACGCTTGGCCACTGACAGCAGAGACTGGAAGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTGCAACCGAACGCTTGGCCACTGACAGCAGAGACTGGAAGTCT  200

seq1  TGTAACAGCTCTGTTCCTCACTGTGTGGTCAAATACCCAATACATGTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACAGCTCTGTTCCTCACTGTGTGGTCAAATACCCAATACATGTGAC  250

seq1  GGGCATATCTTGTCTCACAATGTGAGCGTGCTCTCCGCCAGGGCATAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATATCTTGTCTCACAATGTGAGCGTGCTCTCCGCCAGGGCATAGAA  300

seq1  GGGACATGAGGTGTCTGGTCACCTGGATGCCTGCACTCAGGAAGCAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACATGAGGTGTCTGGTCACCTGGATGCCTGCACTCAGGAAGCAGAGA  350

seq1  TGGGGATGTTGCCACCCTGTCCTCTTGGATTCGTCTGGCAATGGTGCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGATGTTGCCACCCTGTCCTCTTGGATTCGTCTGGCAATGGTGCTGT  400

seq1  TCACAATCAGGATGTGTTTTTCCCTCTTTGGTCAAACCTTTCTGGAAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATCAGGATGTGTTTTTCCCTCTTTGGTCAAACCTTTCTGGAAGGT  450

seq1  ACCATTGTAGACACATTCCAGATGTGATTCTAATCCAATCAACTTGATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTGTAGACACATTCCAGATGTGATTCTAATCCAATCAACTTGATGA  500

seq1  CAAAGACAGCTTATCACAAGTTTATTTCACAGTGCTGGGAATTGAACTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACAGCTTATCACAAGTTTATTTCACAGTGCTGGGAATTGAACTCA  550

seq1  GGTCCTCACACATGCTGGAAAAGTGACCTGCACCAGGCTCCATCCCCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTCACACATGCTGGAAAAGTGACCTGCACCAGGCTCCATCCCCAGG  600

seq1  CCATGATGAAGTTTTCAGTGTATGTGGATGTAATATATAAGACAGCAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGATGAAGTTTTCAGTGTATGTGGATGTAATATATAAGACAGCAACA  650

seq1  TAAGAGGGGAGATACACCAAACCATATCAAGGTGGTTTTCCTAAAAGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGGGAGATACACCAAACCATATCAAGGTGGTTTTCCTAAAAGAAC  700

seq1  ATAACTTTTAAAAGGAAGAATGTTGGAGGGATCATATCATCCAATTGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTTTAAAAGGAAGAATGTTGGAGGGATCATATCATCCAATTGTGA  750

seq1  GACTTCCTATAAAATATAGTGATCTACATAATGTAGTAAAAGAGAAAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCTATAAAATATAGTGATCTACATAATGTAGTAAAAGAGAAAGAC  800

seq1  CCATTAGCGAGACATATAGGAGAAGATCTACACAGTACAGTAGCCAATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAGCGAGACATATAGGAGAAGATCTACACAGTACAGTAGCCAATAT  850

seq1  TTGAATTTCTGTATCAGAGAAACTTGAAAAAGATCTTTTTTCATAAAGTG  900
      ||||||||||||||||||| |||||| |||||||||||||||||||||||
seq2  TTGAATTTCTGTATCAGAG-AACTTG-AAAAGATCTTTTTTCATAAAGTG  898

seq1  GTGTTTGTTGATTGTGACATCCTTATACAAAAGGTCAACTACATCCTAAA  950
      ||||||||||| ||||||||||||||||||||||| ||||||||||||||
seq2  GTGTTTGTTGA-TGTGACATCCTTATACAAAAGGTTAACTACATCCTAAA  947

seq1  CCTCACACCACATATAAAACTGATTTATAGTGGGTCCCAGTGTCACAGTG  1000
      ||||||||||||||| ||||||||||||||||||| ||||||||||||||
seq2  CCTCACACCACATAT-AAACTGATTTATAGTGGGT-CCAGTGTCACAGTG  995

seq1  CTTGTTTGGCCTGCTGGAGGCCTGTGTTAGACTCCTAACCCAGACAGAGA  1050
      |||| |||| |||||||||||||||| |||  |||| |||||||| ||||
seq2  CTTG-TTGGGCTGCTGGAGGCCTGTGGTAGGATCCTTACCCAGAC-GAGA  1043

seq1  -AACACCACCTTCCCAAACAAAAAAACTCAAGCGGGTTGTAATTGAAATG  1099
       |||||||| ||| ||||| |||||||||| ||||| ||||| || ||||
seq2  GAACACCACTTTCTCAAAC-AAAAAACTCAGGCGGG-TGTAA-TGGAATG  1090

seq1  TGACACATAAAACTATAAAGCTTTTAGAAGAAAATCCTTGTGACCATGAA  1149
      |||||| ||||  ||||||||||| ||    ||||||||| || |  |||
seq2  TGACAC-TAAACTTATAAAGCTTTGAG----AAATCCTTG-GA-CTGGAA  1133

seq1  TCAGGAT  1156
      |||||||
seq2  TCAGGAT  1140

seq1: chr4_42971410_42971753
seq2: B6Ng01-063E15.g_75_418 (reverse)

seq1  CCCACCCCACCCCACTCCCACAGTTGTATAGAAGTCGAATAGTGAAGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCCACCCCACTCCCACAGTTGTATAGAAGTCGAATAGTGAAGGAG  50

seq1  CTGGGAGAAAACTGCTTCAGCTGGTCTTGGGGTGGGGTTCTTAGGTTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGAAAACTGCTTCAGCTGGTCTTGGGGTGGGGTTCTTAGGTTTTC  100

seq1  TCACTTTGACAAGCCCCTGAATGTTTTTATAGTAGTTTTTTGTATTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTGACAAGCCCCTGAATGTTTTTATAGTAGTTTTTTGTATTTTTT  150

seq1  TGTAATGACAGTATTATGAAAAAAATAAAGTATTTTAAAAATATAGCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGACAGTATTATGAAAAAAATAAAGTATTTTAAAAATATAGCCTC  200

seq1  TGCGCAGAAGCAGTAACCCTGGTGCAGGCAGGAACACAGAGCCACTGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCAGAAGCAGTAACCCTGGTGCAGGCAGGAACACAGAGCCACTGTCA  250

seq1  GCCTCCTTCCAGGGTCCTGGGCACCCCAGGAAAGCCGGTCAACCTTAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTTCCAGGGTCCTGGGCACCCCAGGAAAGCCGGTCAACCTTAGCA  300

seq1  TATGCTGAGGCTCAACTCTTCTTCCTATAAGCTCTGACCTCTTG  344
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGAGGCTCAACTCTTCTTCCTATAAGCTCTGACCTCTTG  344