BAC Information

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BAC

Clone NameB6Ng01-063P10
Chromosome4 (Build37)
Map Location 88,486,244 - 88,621,214
singlet/doubletdoublet
Overlap geneIfna4, Ifna1, Ifne1
Upstream geneMllt3, BC057079, Ptplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5
Downstream geneLOC100040617, Mtap, LOC625574, Cdkn2a, Cdkn2b, LOC664785, Dmrta1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063P10.bB6Ng01-063P10.g
ACCDH883896DH883897
length8841,052
definitionDH883896|Mus musculus domesticus DNA, BAC clone: B6Ng01-063P10, 5' end.DH883897|Mus musculus domesticus DNA, BAC clone: B6Ng01-063P10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,486,244 - 88,486,906)(88,620,153 - 88,621,214)
sequence
gaattcttcaagtacaagatttcttttctgagtaaacagttttccatgat
cttctccctcactgcatgaaatgttgttctgattttatttgttatattgg
tacatgatcttgtagctacctttgtctctgactatcgatttcaaatcttt
tacaagcaattcagcatttcacatattctttgactgttgtgtcaatgttt
tctatggaatcttctgcacctgagattctctcttctaactcttgtattct
gttgattatgcttgcatctatggctcctgccttcttccctagattttctg
tctccagacttgtctccctttgtgatttctttattgtttctatttccatt
tttagatcctggatagttttgttcaattccatcacctgtttgcttgtgtt
ttcctgtaatactttaagggctttttgtgtttccactttaagggtttcta
cctgtttacctgtgttctcctctttctttaagtgagttatttgtgtccat
cttaaagcactgcatcatcatcatgaaaaatgactttaaatacatgtatt
gcttttctggtgtgatggtgtattcaggacttgttatggtgggagaatgt
tctgaggatgacaagtaaacttggtgtttctgttgcttctgttcttatgc
ttgcctcctgccatctgattatctcaagagctccctactcttgctttatc
tgattggagcctgtcctccctgtaatcccagttgagtcagaataactcag
agtccagctttctctgtgatcctgtgattgcgggatcctgtgatcctgag
attctgggtgtgtcagagtttcctgggagtcaagcttcctctgcaccctg
agatcctgtgtgaccaagctcctgggatcctaac
gaattcttatgcaagtcacagggaaagggttttaaagaaaactcagcaga
acacagaatcaggaaaggataacattatttatgggaaggcccacaaaacc
taaacctcttgcctaaatacatagacaatttgaaaggccaggacataaga
ccagctttgtagctggaagtagtggccttttgctgcatcatgagaaacca
taaactgtacaaggtaaactatattagtcaccatcttggctagaaatgaa
aatgtctttgggctcagacagacagaaaaggcaggtatcagaagaaatga
cagttggagacctcacctctgactacattattaaagagagtcacagtcca
gttggagccagagctgcaagttatagcagctagtaccggtgtgttggcct
ctgaagtttcatggctggcagtttgttttaccatggctgttcttattata
ttctcagtgttactaaataaaacagagatgtcctgaaatagcaagtgtct
gatatgcacttttttttttacctgcactgacctcatttcccactcattct
atttgtggctccagatggaatctgtcaatctcattgcaaacatgtagtgg
tttgaggtaaagttactaagagatggaagtgcctgccaagccctgaatac
tggtcagtattgttcatgctctccagagaaaaaagttctggaagcaggag
ttgggggttgcagtgggtcgaggaggaattggaggagagagactgaagga
tgaacttgatcaagacacattacatgcatgtgtgaaatctctatgaaaac
agaggcgagaaccaaggtgtacagagaggagaggagctggcagaagcctg
gaacttattccagtgtctacagtagcaatgctagtgtctaattgctttgt
aaagggattaggaaatatggtagcatgaaagtcaatattgcatcagcatg
ctttgagccatggttacagcatgataaattcagcaagaactcattttaga
cttctatgcacagggactttgatgatttcctgaacaacatctagaggaga
ca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_88486244_88486906
seq2: B6Ng01-063P10.b_45_707

seq1  GAATTCTTCAAGTACAAGATTTCTTTTCTGAGTAAACAGTTTTCCATGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAAGTACAAGATTTCTTTTCTGAGTAAACAGTTTTCCATGAT  50

seq1  CTTCTCCCTCACTGCATGAAATGTTGTTCTGATTTTATTTGTTATATTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCCTCACTGCATGAAATGTTGTTCTGATTTTATTTGTTATATTGG  100

seq1  TACATGATCTTGTAGCTACCTTTGTCTCTGACTATCGATTTCAAATCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGATCTTGTAGCTACCTTTGTCTCTGACTATCGATTTCAAATCTTT  150

seq1  TACAAGCAATTCAGCATTTCACATATTCTTTGACTGTTGTGTCAATGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGCAATTCAGCATTTCACATATTCTTTGACTGTTGTGTCAATGTTT  200

seq1  TCTATGGAATCTTCTGCACCTGAGATTCTCTCTTCTAACTCTTGTATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGGAATCTTCTGCACCTGAGATTCTCTCTTCTAACTCTTGTATTCT  250

seq1  GTTGATTATGCTTGCATCTATGGCTCCTGCCTTCTTCCCTAGATTTTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATTATGCTTGCATCTATGGCTCCTGCCTTCTTCCCTAGATTTTCTG  300

seq1  TCTCCAGACTTGTCTCCCTTTGTGATTTCTTTATTGTTTCTATTTCCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGACTTGTCTCCCTTTGTGATTTCTTTATTGTTTCTATTTCCATT  350

seq1  TTTAGATCCTGGATAGTTTTGTTCAATTCCATCACCTGTTTGCTTGTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATCCTGGATAGTTTTGTTCAATTCCATCACCTGTTTGCTTGTGTT  400

seq1  TTCCTGTAATACTTTAAGGGCTTTTTGTGTTTCCACTTTAAGGGTTTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTAATACTTTAAGGGCTTTTTGTGTTTCCACTTTAAGGGTTTCTA  450

seq1  CCTGTTTACCTGTGTTCTCCTCTTTCTTTAAGTGAGTTATTTGTGTCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTACCTGTGTTCTCCTCTTTCTTTAAGTGAGTTATTTGTGTCCAT  500

seq1  CTTAAAGCACTGCATCATCATCATGAAAAATGACTTTAAATACATGTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGCACTGCATCATCATCATGAAAAATGACTTTAAATACATGTATT  550

seq1  GCTTTTCTGGTGTGATGGTGTATTCAGGACTTGTTATGGTGGGAGAATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCTGGTGTGATGGTGTATTCAGGACTTGTTATGGTGGGAGAATGT  600

seq1  TCTGAGGATGACAAGTAAACTTGGTGTTTCTGTTGCTTCTGTTCTTATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGATGACAAGTAAACTTGGTGTTTCTGTTGCTTCTGTTCTTATGC  650

seq1  TTGCCTCCTGCCA  663
      |||||||||||||
seq2  TTGCCTCCTGCCA  663

seq1: chr4_88620153_88621214
seq2: B6Ng01-063P10.g_68_1119 (reverse)

seq1  TGTCTCCTCTTAAGGATGTTGTTCAGGGAATTCATCAAAAGTCCCTGTGC  50
      ||||||||||    ||||||||||| |||| ||||| |||||||||||||
seq2  TGTCTCCTCT---AGATGTTGTTCA-GGAAATCATC-AAAGTCCCTGTGC  45

seq1  ATAGAAGTCTAAAAATGAAGTTCTTGCTGAATTTATCATGCTGTAACCAT  100
      |||||||||| |||||| ||||||||||||||||||||||||||||||||
seq2  ATAGAAGTCT-AAAATG-AGTTCTTGCTGAATTTATCATGCTGTAACCAT  93

seq1  GGCCTCAAAGCATGCTGATGCAATATTGACTTTCATGCTACCATATTTCC  150
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GG-CTCAAAGCATGCTGATGCAATATTGACTTTCATGCTACCATATTTCC  142

seq1  TAATCCCTTTACAAAGCAATTAGACACTAGCATTGCTACTGTAGACACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCTTTACAAAGCAATTAGACACTAGCATTGCTACTGTAGACACTG  192

seq1  GAATAAGTTCCAGGCTTCTGCCAGCTCCTCTCCTCTCTGTACACCTTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGTTCCAGGCTTCTGCCAGCTCCTCTCCTCTCTGTACACCTTGGT  242

seq1  TCTCGCCTCTGTTTTTCATAGAGATTTTCACACATGCATGTAATGTGTCT  300
      ||||||||||| |||||||||||| |||||||||||||||||||||||||
seq2  TCTCGCCTCTG-TTTTCATAGAGA-TTTCACACATGCATGTAATGTGTCT  290

seq1  TGATCAAGTTCATCCTTCAGTCTCTCTCCTCCAATTCCTCCTCGACCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAAGTTCATCCTTCAGTCTCTCTCCTCCAATTCCTCCTCGACCCAC  340

seq1  TGCAACCCCCAACTCCTGCTTCCAGAACTTTTTTCTCTGGAGAGCATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACCCCCAACTCCTGCTTCCAGAACTTTTTTCTCTGGAGAGCATGAA  390

seq1  CAATACTGACCAGTATTCAGGGCTTGGCAGGCACTTCCATCTCTTAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACTGACCAGTATTCAGGGCTTGGCAGGCACTTCCATCTCTTAGTAA  440

seq1  CTTTACCTCAAACCACTACATGTTTGCAATGAGATTGACAGATTCCATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCTCAAACCACTACATGTTTGCAATGAGATTGACAGATTCCATCT  490

seq1  GGAGCCACAAATAGAATGAGTGGGAAATGAGGTCAGTGCAGGTAAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCACAAATAGAATGAGTGGGAAATGAGGTCAGTGCAGGTAAAAAAA  540

seq1  AAAGTGCATATCAGACACTTGCTATTTCAGGACATCTCTGTTTTATTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGCATATCAGACACTTGCTATTTCAGGACATCTCTGTTTTATTTAG  590

seq1  TAACACTGAGAATATAATAAGAACAGCCATGGTAAAACAAACTGCCAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTGAGAATATAATAAGAACAGCCATGGTAAAACAAACTGCCAGCC  640

seq1  ATGAAACTTCAGAGGCCAACACACCGGTACTAGCTGCTATAACTTGCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACTTCAGAGGCCAACACACCGGTACTAGCTGCTATAACTTGCAGC  690

seq1  TCTGGCTCCAACTGGACTGTGACTCTCTTTAATAATGTAGTCAGAGGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTCCAACTGGACTGTGACTCTCTTTAATAATGTAGTCAGAGGTGA  740

seq1  GGTCTCCAACTGTCATTTCTTCTGATACCTGCCTTTTCTGTCTGTCTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCCAACTGTCATTTCTTCTGATACCTGCCTTTTCTGTCTGTCTGAG  790

seq1  CCCAAAGACATTTTCATTTCTAGCCAAGATGGTGACTAATATAGTTTACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGACATTTTCATTTCTAGCCAAGATGGTGACTAATATAGTTTACC  840

seq1  TTGTACAGTTTATGGTTTCTCATGATGCAGCAAAAGGCCACTACTTCCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACAGTTTATGGTTTCTCATGATGCAGCAAAAGGCCACTACTTCCAG  890

seq1  CTACAAAGCTGGTCTTATGTCCTGGCCTTTCAAATTGTCTATGTATTTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAGCTGGTCTTATGTCCTGGCCTTTCAAATTGTCTATGTATTTAG  940

seq1  GCAAGAGGTTTAGGTTTTGTGGGCCTTCCCATAAATAATGTTATCCTTTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGGTTTAGGTTTTGTGGGCCTTCCCATAAATAATGTTATCCTTTC  990

seq1  CTGATTCTGTGTTCTGCTGAGTTTTCTTTAAAACCCTTTCCCTGTGACTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTCTGTGTTCTGCTGAGTTTTCTTTAAAACCCTTTCCCTGTGACTT  1040

seq1  GCATAAGAATTC  1062
      ||||||||||||
seq2  GCATAAGAATTC  1052