BAC Information

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BAC

Clone NameB6Ng01-064H06
Chromosome4 (Build37)
Map Location 145,369,539 - 145,481,740
singlet/doubletdoublet
Overlap gene1700029I01Rik, LOC236069, LOC384084
Upstream geneGm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704
Downstream geneLOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064H06.bB6Ng01-064H06.g
ACCDH884235DH884236
length1,090982
definitionDH884235|Mus musculus domesticus DNA, BAC clone: B6Ng01-064H06, 5' end.DH884236|Mus musculus domesticus DNA, BAC clone: B6Ng01-064H06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,369,539 - 145,370,660)(145,480,760 - 145,481,740)
sequence
gaattcaactttgtactcacactcagctaaatgcctctgaggaaaaggct
ttcatttctttccttaactcaacacagatgcattattaaccaccagtatg
tttaatctactcacatatgaggaatcaattagcttgtgactttcttttgt
ataagtacaatatgggaaaaactaaaaatcaccccaatgcgaaactagta
gccctgtcatctgaaaggtgtccatgggcacagaaccctgttctttaaag
tcagacccccaggtttgggcttgtgcttctgagctctcacctccatgctg
agctagaatccattttaacctctcataatcatcacaacaggttttgaacc
taagaggtcacatgagaattctggaactcattataatcatgaaaagagtt
gacttcctagcaacagtctaatgagacttgggtaaatctcgagtctcctt
tcccccacttatgctgacatgcatgggtgtacatagagtgttacagggaa
caatcaggaaaccatttatcaacaaacagtgcagtatgtattgtaatttt
gttctagttttctttctctctttctgtctgtctgtctttcttactgtctt
tctttctttctttctttctttctttctttctttctttctttctttctttc
tttctttctttctgtctctctctcgctttctttctttctttctttctttc
tttctttctttctttctttctttctttctttctttctgtctctctctctt
tctttctttctttcttcctttccttacttttttttgacaaagatcaggac
agttttccaaaggagtttctctttattgcctcatccctcaagcagtaata
atattgtcccttgacctaacatcattttaattcaccatttctttgattga
gcatccacctctctactttcttaagtctgtaatctgtctcccacaggtct
ctaagtatcattttatttgcctcactgcatttctctcaggattttttggt
tgtgcatttctagcactatttgaactaattttatattttatgcttattcc
ttagcatctgggtatttcttgaccagatcattttgtcctg
gaattcctacaagtgggtaagagaataattatacatatgcaggacgtgaa
caccttatccaaagatataaaaatctaaggaatgctcactctgaaatgaa
acaagaaatgaactctgttaagcctggtggtaactcagtggccaatatat
gaagatgcagcattcagccaaaataaataaataaataaataaataaataa
ataaataaataaataaataaataaataaaaatcagctcgtcaatgaaagg
tctttcatcctagctctcagggatgtgacctaaaagccattctggtctct
atatcaggacatgtgaaagtcaggactagagtgtgggaccctgttttaca
aacaaacaaacgaacaggaaacccatacaagaaattagagctttattttc
tacattgatatcaaaatcaatttaaaaagcacaaggatattagaaggctg
attatataggtatgaaagaatcaatctcctactggataatacttttatct
tttaaaattggatcctcagtgggtcacaatgttttgaggaatttagttgt
tggaacattgctgaataaagtatgacactgggggttggctatgagaaaaa
agaatagatagatccaagccatcttaattctctcttcctctttagtgact
ggggttgaggatgtgatttttcaccttttctacttcaacaacatggctgt
gttctatcagtcttccctgccatggttgatggctatcctctggaagcatt
acgcaaagtagtctttttctttctattagtttccttgaacatggtgttta
tgaaagcaacagacaaaaataaattacagtaaaacatattctggttggat
ttaagggtgccttttcagaagagagaatttcatgtcttttctggaatcta
atcaagaaccaggaagtatgttggtcatgagaactatgaaggccatttaa
gaaatggtatcttctaaaataactagttatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145369539_145370660
seq2: B6Ng01-064H06.b_43_1132

seq1  GAATTCAACTTTGTACTCACACTCAGCTAAATGCCTCTGAGGAAAAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTTTGTACTCACACTCAGCTAAATGCCTCTGAGGAAAAGGCT  50

seq1  TTCATTTCTTTCCTTAACTCAACACAGATGCATTATTAACCACCAGTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTCTTTCCTTAACTCAACACAGATGCATTATTAACCACCAGTATG  100

seq1  TTTAATCTACTCACATATGAGGAATCAATTAGCTTGTGACTTTCTTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCTACTCACATATGAGGAATCAATTAGCTTGTGACTTTCTTTTGT  150

seq1  ATAAGTACAATATGGGAAAAACTAAAAATCACCCCAATGCGAAACTAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTACAATATGGGAAAAACTAAAAATCACCCCAATGCGAAACTAGTA  200

seq1  GCCCTGTCATCTGAAAGGTGTCCATGGGCACAGAACCCTGTTCTTTAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGTCATCTGAAAGGTGTCCATGGGCACAGAACCCTGTTCTTTAAAG  250

seq1  TCAGACCCCCAGGTTTGGGCTTGTGCTTCTGAGCTCTCACCTCCATGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACCCCCAGGTTTGGGCTTGTGCTTCTGAGCTCTCACCTCCATGCTG  300

seq1  AGCTAGAATCCATTTTAACCTCTCATAATCATCACAACAGGTTTTGAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGAATCCATTTTAACCTCTCATAATCATCACAACAGGTTTTGAACC  350

seq1  TAAGAGGTCACATGAGAATTCTGGAACTCATTATAATCATGAAAAGAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGTCACATGAGAATTCTGGAACTCATTATAATCATGAAAAGAGTT  400

seq1  GACTTCCTAGCAACAGTCTAATGAGACTTGGGTAAATCTCGAGTCTCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCTAGCAACAGTCTAATGAGACTTGGGTAAATCTCGAGTCTCCTT  450

seq1  TCCCCCACTTATGCTGACATGCATGGGTGTACATAGAGTGTTACAGGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCACTTATGCTGACATGCATGGGTGTACATAGAGTGTTACAGGGAA  500

seq1  CAATCAGGAAACCATTTATCAACAAACAGTGCAGTATGTATTGTAATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGGAAACCATTTATCAACAAACAGTGCAGTATGTATTGTAATTTT  550

seq1  GTTCTAGTTTTCTTTCTCTCTTTCTGTCTGTCTGTCTTTCTTACTGTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAGTTTTCTTTCTCTCTTTCTGTCTGTCTGTCTTTCTTACTGTCTT  600

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  650

seq1  TTTCTTTCTTTCTGTCTCTCTCTCGCTTTCTTTCTTTCTTTCTTTCTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTGTCTCTCTCTCGCTTTCTTTCTTTCTTTCTTTCTTTC  700

seq1  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTGTCTCTCTCTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTGTCTCTCTCTCTT  750

seq1  TCTTTCTTTCTTTCTTCCTTTCCTTACTTTTTTTTTGACAAAGATCAGGA  800
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTCCTTTCCTTAC-TTTTTTTTGACAAAGATCAGGA  799

seq1  CAGTTTTCCAAAGGAGTTTCTCTTTATTGCCTCATCCTTCAAGCAGTAAA  850
      ||||||||||||||||||||||||||||||||||||| ||||||||| ||
seq2  CAGTTTTCCAAAGGAGTTTCTCTTTATTGCCTCATCCCTCAAGCAGT-AA  848

seq1  TAATATTGTCCCTTGACCTAACATCATTTTAATTCACCATTTTCTTTGAT  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAATATTGTCCCTTGACCTAACATCATTTTAATTCACCA-TTTCTTTGAT  897

seq1  TGAGGCATCCACCTCCTCTACTTTTTCTTTAAGTCTGATAATCTGTCTCC  950
      ||| |||||||||| |||||||||    ||||||||| ||||||||||||
seq2  TGA-GCATCCACCT-CTCTACTTT---CTTAAGTCTG-TAATCTGTCTCC  941

seq1  CACAGGTTCTCTATGTATCATTTTTATTTGCCTCACTGCATTTTCTCTTC  1000
      |||||| |||||| |||||| ||||||||||||||||||| |||||| ||
seq2  CACAGG-TCTCTAAGTATCA-TTTTATTTGCCTCACTGCA-TTTCTC-TC  987

seq1  AGGATTTTTTTGTGTGTGGCATTTCTAAGCACCTATTGAACATAATTTTA  1050
      |||||||||| || ||| |||||||| |||||   |||||| ||||||| 
seq2  AGGATTTTTTGGT-TGT-GCATTTCT-AGCACTATTTGAAC-TAATTTT-  1032

seq1  ATATTTTATATTGTCCTTATTTCCTTCAGGCATCTGGTGTTATTTTCTTG  1100
      ||||||||     | |||| ||||||   |||||||| ||   |||||||
seq2  ATATTTTA-----TGCTTA-TTCCTT--AGCATCTGG-GT--ATTTCTTG  1071

seq1  ACCAAGATTCATTTTGTTCCTG  1122
      ||| ||| |||||||| |||||
seq2  ACC-AGA-TCATTTTG-TCCTG  1090

seq1: chr4_145480760_145481740
seq2: B6Ng01-064H06.g_69_1050 (reverse)

seq1  ACATAACTATGATAATTTTAGATGATACCATTTCTTAAAATGGCC-TCAT  49
      |||||||||   | |||||||| ||||||||||||| |||||||| ||||
seq2  ACATAACTA--GTTATTTTAGAAGATACCATTTCTT-AAATGGCCTTCAT  47

seq1  AGTTCTCATGACCTAACATACTTCCT-GTTCTTGATTAGATTTCAGAATA  98
      ||||||||||||| |||||||||||| ||||||||||||||| ||||| |
seq2  AGTTCTCATGACC-AACATACTTCCTGGTTCTTGATTAGATTCCAGAA-A  95

seq1  TGACATG-AATTCTCTC-TCTG-AAAGGCAACCTTAAATCCAACCAGAAT  145
       |||||| ||||||||| |||| ||||||| |||||||||||||||||||
seq2  AGACATGAAATTCTCTCTTCTGAAAAGGCACCCTTAAATCCAACCAGAAT  145

seq1  ATGTTTTACTGTAATTTATTTTTGTCTGTTGCTTTCATAAAACACCATGT  195
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATGTTTTACTGTAATTTATTTTTGTCTGTTGCTTTCAT-AAACACCATGT  194

seq1  TCAAGGAAACTAATAG-AAGAAAAAGACTACTTTGCGTAATGCTTCCAGA  244
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCAAGGAAACTAATAGAAAGAAAAAGACTACTTTGCGTAATGCTTCCAGA  244

seq1  GGATAGCCATCAACCATGGCAGGGAAGACTGATAGAACACAGCCATGTTG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGCCATCAACCATGGCAGGGAAGACTGATAGAACACAGCCATGTTG  294

seq1  TTGAAGTAG-AAAGGTGAAAAATCACATCCTCAACCCCAGTCACTAAAGA  343
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTAGAAAAGGTGAAAAATCACATCCTCAACCCCAGTCACTAAAGA  344

seq1  GGAAGAGAGAATTAAGATGGCTTGGATCTATCTATTCTTTTTTCTCATAG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGAGAATTAAGATGGCTTGGATCTATCTATTCTTTTTTCTCATAG  394

seq1  CCAACCCCCAGTGTCATACTTTATTCAGCAATGTTCCAACAACTAAATTC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCCCCAGTGTCATACTTTATTCAGCAATGTTCCAACAACTAAATTC  444

seq1  CTCAAAACATTGTGACCCACTGAGGATCCAATTTTAAAAGATAAAAGTAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAACATTGTGACCCACTGAGGATCCAATTTTAAAAGATAAAAGTAT  494

seq1  TATCCAGTAGGAGATTGATTCTTTCATACCTATATAATCAGCCTTCTAAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAGTAGGAGATTGATTCTTTCATACCTATATAATCAGCCTTCTAAT  544

seq1  ATCCTTGTGCTTTTTAAATTGATTTTGATATCAATGTAGAAAATAAAGCT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGTGCTTTTTAAATTGATTTTGATATCAATGTAGAAAATAAAGCT  594

seq1  CTAATTTCTTGTATGGGTTTCCTGTTCGTTTGTTTGTTTGTAAAACAGGG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTCTTGTATGGGTTTCCTGTTCGTTTGTTTGTTTGTAAAACAGGG  644

seq1  TCCCACACTCTAGTCCTGACTTTCACATGTCCTGATATAGAGACCAGAAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACACTCTAGTCCTGACTTTCACATGTCCTGATATAGAGACCAGAAT  694

seq1  GGCTTTTAGGTCACATCCCTGAGAGCTAGGATGAAAGACCTTTCATTGAC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTAGGTCACATCCCTGAGAGCTAGGATGAAAGACCTTTCATTGAC  744

seq1  GAGCTGATTTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGATTTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTAT  794

seq1  TTATTTATTTATTTATTTTGGCTGAATGCTGCATCTTCATATATTGGCCA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTTATTTATTTTGGCTGAATGCTGCATCTTCATATATTGGCCA  844

seq1  CTGAGTTACCACCAGGCTTAACAGAGTTCATTTCTTGTTTCATTTCAGAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTACCACCAGGCTTAACAGAGTTCATTTCTTGTTTCATTTCAGAG  894

seq1  TGAGCATTCCTTAGATTTTTATATCTTTGGATAAGGTGTTCACGTCCTGC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATTCCTTAGATTTTTATATCTTTGGATAAGGTGTTCACGTCCTGC  944

seq1  ATATGTATAATTATTCTCTTACCCACTTGTAGGAATTC  981
      ||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATAATTATTCTCTTACCCACTTGTAGGAATTC  982