BAC Information

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BAC

Clone NameB6Ng01-064I09
Chromosome4 (Build37)
Map Location 36,008,937 - 36,114,268
singlet/doubletdoublet
Overlap genenone
Upstream geneMobkl2b, Ifnk, 3110043O21Rik, LOC620559, LOC621227, Lingo2
Downstream geneLOC100042132, LOC545600
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064I09.bB6Ng01-064I09.g
ACCDH884287DH884288
length1,1071,144
definitionDH884287|Mus musculus domesticus DNA, BAC clone: B6Ng01-064I09, 5' end.DH884288|Mus musculus domesticus DNA, BAC clone: B6Ng01-064I09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,113,156 - 36,114,268)(36,008,937 - 36,010,085)
sequence
gaattcccttgcagagtggccactcaagtctctaatgtcttttaaccgca
agagatgcccagaaatttcttctagggtacatttctggctgccctaaatg
aatccaagtaaattaaaaggaagagtccaatttaaagtctaagatcatca
atgtctagaatttttcacaaagcaagtgaaatgaagaaaagtatgtttta
aaaagttttcatgatgagctttcaacgaccactaataacaaatctcagta
cttaaactttaaaaaatgcatcactaatgtcagagaggtgttctctgcac
atgtctaagcaacaaccaaagagagaaaatacattcacaaagcccatgtg
aatactaatgttttatctcaaacgttatacaaaatttgtacccaacgtta
caatgtatatgtgttaattttattaatatacataatgctgtaaactactt
cttaccgaagagaagtaccattccatgaaagtgtcactttgtgttctaca
ccttgttctatctcctaccatactgatgtatacctaggggacaagggacc
ttattttgagcagcatggatttttcttctgattctattatttcagagttt
ctgtccatatttttttttaaaaaactctttattctttgtgaatttcacat
catgcatttcaatcctactcatcactctgtccctctagatccaccctcca
ccctagccacttccccaccccggaaagaaaatcaacattaaaaaaaaaat
ttcaccatggaagttgcagtttgtcacagttagttacacagtatacccct
ttgcagttatacttttaaaatacagtttacacaacaaatccatcctcttg
gcaatcagtttgtgttcttcctcctaatcctctaatacgctggcatagcg
aaggaagagaatgctagtgtttgggtgagtatgtaataataaagcagcat
tttccagctcatctctaattgatgactgtttccatatcatttccaaacat
atttacacagttgacattgttatctccttgtttccaatagcacatgattg
acctgtctattttttgatctaaagccacacctaaggaatagaatatatat
agacttt
gaattccaacgtccttaattgatagtgttgtgttgtcaattaaaagctta
tagattgaatttgagcaacttgctcagtctatagatgaagagcctagtct
caagaaagtgacgtgacaaatctgagggtgtttggatcacaggaggatct
atgtgaatacctaaaggcaagatgctcctacctctccagtacgaggtctc
tagcatgctcagcatggtgtctcaacattatagatttccaatgtgcttga
ttttaaagaactatgttcgttggtagttttattttagaaagataccaaag
ccaacaaacagcacaccagtatttctaagtacacattttaaatgagcaga
atttgctgaaagcaacagatgatctctctcaccactctctccaattaaac
caatacagacataaggagaaaatggtcttaatagatggtgacaacaccag
tgcttttactgtaatataaatagcatgttgctattttgctgatgcccatt
tttgcatattcagttgcattattagtagccacaaacatgaaataatctct
ccacatattcatgtaatattaacctagtatcattttcattttgcaactta
gcagggatcctaaagtgacacaaagtaagatcaaggacaattccatcaac
atctgaatccagcactggagactcacagatgattcttcaagttttcagct
cttatcaaaggtgtgcaaatctcatttcattatggtgtgcaacctttcca
cctcaaacaggacatgttcctctttatttccttaaaaatgcagcatctat
gactcgcttgccccagcttttctcaactgactggtatcttctttccaggt
ctattttcatctgtgctcttcctctgtgccactaaacataactaaataat
gttttaagagatacgacgaaaggatggaccatctagagactgccataccc
ggggatccatcccataatcagcctcaaacgctgacaccattgcatacact
agcaagatttgctgaaaggaccagataaagctgtctcttgtgagactctg
caaggcctagcaaacacaaaatggatagctcacaagtcagctattggatg
gaaacacaggctgcattggaggaactaagaaaagtacccaagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_36113156_36114268
seq2: B6Ng01-064I09.b_46_1152 (reverse)

seq1  AAAGTC--TATTTATTCTATTCCTTAAGGTGT-GCTCTAGGATCATAAAA  47
      ||||||  ||| ||||||||||||| |||||| ||| || ||||| ||||
seq2  AAAGTCTATATATATTCTATTCCTT-AGGTGTGGCTTTA-GATCAAAAAA  48

seq1  TAAGACAGGTCAATCATGTGCTTATAGGAAACAAAGGAGATAACAATGTC  97
      | ||||||||||||||||||| ||| |||||| |||||||||||||||||
seq2  T-AGACAGGTCAATCATGTGC-TATTGGAAAC-AAGGAGATAACAATGTC  95

seq1  AACTGTGTAAATATTGGTTTGGAAATGATATGGAAACAGTCATCAATTAG  147
      ||||||||||||||  ||||||||||||||||||||||||||||||||||
seq2  AACTGTGTAAATAT--GTTTGGAAATGATATGGAAACAGTCATCAATTAG  143

seq1  AGATGAGCTGGAAAATGCTGCTTTTATTATTACATTACTCACCCAAACAC  197
      ||||||||||||||||||||| |||||||||||| |||||||||||||||
seq2  AGATGAGCTGGAAAATGCTGC-TTTATTATTACA-TACTCACCCAAACAC  191

seq1  TAGCATTCTCTTCCTTCGCTATGCCAGCGTATTAGAGGATTAGGAGGAAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTCTCTTCCTTCGCTATGCCAGCGTATTAGAGGATTAGGAGGAAG  241

seq1  AACACAAACTGATTGCCAAGAGGATGGATTTGTTGTGTAAACTGTATTTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAACTGATTGCCAAGAGGATGGATTTGTTGTGTAAACTGTATTTT  291

seq1  AAAAGTATAACTGCAAAGGGGTATACTGTGTAACTAACTGTGACAAACTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTATAACTGCAAAGGGGTATACTGTGTAACTAACTGTGACAAACTG  341

seq1  CAACTTCCATGGTGAAATTTTTTTTTTAATGTTGATTTTCTTTCCGGGGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCCATGGTGAAATTTTTTTTTTAATGTTGATTTTCTTTCCGGGGT  391

seq1  GGGGAAGTGGCTAGGGTGGAGGGTGGATCTAGAGGGACAGAGTGATGAGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGTGGCTAGGGTGGAGGGTGGATCTAGAGGGACAGAGTGATGAGT  441

seq1  AGGATTGAAATGCATGATGTGAAATTCACAAAGAATAAAGAGTTTTTTAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTGAAATGCATGATGTGAAATTCACAAAGAATAAAGAGTTTTTTAA  491

seq1  AAAAAAATATGGACAGAAACTCTGAAATAATAGAATCAGAAGAAAAATCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATATGGACAGAAACTCTGAAATAATAGAATCAGAAGAAAAATCC  541

seq1  ATGCTGCTCAAAATAAGGTCCCTTGTCCCCTAGGTATACATCAGTATGGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGCTCAAAATAAGGTCCCTTGTCCCCTAGGTATACATCAGTATGGT  591

seq1  AGGAGATAGAACAAGGTGTAGAACACAAAGTGACACTTTCATGGAATGGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATAGAACAAGGTGTAGAACACAAAGTGACACTTTCATGGAATGGT  641

seq1  ACTTCTCTTCGGTAAGAAGTAGTTTACAGCATTATGTATATTAATAAAAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCTTCGGTAAGAAGTAGTTTACAGCATTATGTATATTAATAAAAT  691

seq1  TAACACATATACATTGTAACGTTGGGTACAAATTTTGTATAACGTTTGAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACATATACATTGTAACGTTGGGTACAAATTTTGTATAACGTTTGAG  741

seq1  ATAAAACATTAGTATTCACATGGGCTTTGTGAATGTATTTTCTCTCTTTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACATTAGTATTCACATGGGCTTTGTGAATGTATTTTCTCTCTTTG  791

seq1  GTTGTTGCTTAGACATGTGCAGAGAACACCTCTCTGACATTAGTGATGCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGCTTAGACATGTGCAGAGAACACCTCTCTGACATTAGTGATGCA  841

seq1  TTTTTTAAAGTTTAAGTACTGAGATTTGTTATTAGTGGTCGTTGAAAGCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAAGTTTAAGTACTGAGATTTGTTATTAGTGGTCGTTGAAAGCT  891

seq1  CATCATGAAAACTTTTTAAAACATACTTTTCTTCATTTCACTTGCTTTGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGAAAACTTTTTAAAACATACTTTTCTTCATTTCACTTGCTTTGT  941

seq1  GAAAAATTCTAGACATTGATGATCTTAGACTTTAAATTGGACTCTTCCTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTCTAGACATTGATGATCTTAGACTTTAAATTGGACTCTTCCTT  991

seq1  TTAATTTACTTGGATTCATTTAGGGCAGCCAGAAATGTACCCTAGAAGAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTACTTGGATTCATTTAGGGCAGCCAGAAATGTACCCTAGAAGAA  1041

seq1  ATTTCTGGGCATCTCTTGCGGTTAAAAGACATTAGAGACTTGAGTGGCCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGGGCATCTCTTGCGGTTAAAAGACATTAGAGACTTGAGTGGCCA  1091

seq1  CTCTGCAAGGGAATTC  1113
      ||||||||||||||||
seq2  CTCTGCAAGGGAATTC  1107

seq1: chr4_36008937_36010085
seq2: B6Ng01-064I09.g_67_1210

seq1  GAATTCCAACGTCCTTAATTGATAGTGTTGTGTTGTCAATTAAAAGCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACGTCCTTAATTGATAGTGTTGTGTTGTCAATTAAAAGCTTA  50

seq1  TAGATTGAATTTGAGCAACTTGCTCAGTCTATAGATGAAGAGCCTAGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTGAATTTGAGCAACTTGCTCAGTCTATAGATGAAGAGCCTAGTCT  100

seq1  CAAGAAAGTGACGTGACAAATCTGAGGGTGTTTGGATCACAGGAGGATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAGTGACGTGACAAATCTGAGGGTGTTTGGATCACAGGAGGATCT  150

seq1  ATGTGAATACCTAAAGGCAAGATGCTCCTACCTCTCCAGTACGAGGTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAATACCTAAAGGCAAGATGCTCCTACCTCTCCAGTACGAGGTCTC  200

seq1  TAGCATGCTCAGCATGGTGTCTCAACATTATAGATTTCCAATGTGCTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATGCTCAGCATGGTGTCTCAACATTATAGATTTCCAATGTGCTTGA  250

seq1  TTTTAAAGAACTATGTTCGTTGGTAGTTTTATTTTAGAAAGATACCAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGAACTATGTTCGTTGGTAGTTTTATTTTAGAAAGATACCAAAG  300

seq1  CCAACAAACAGCACACCAGTATTTCTAAGTACACATTTTAAATGAGCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAAACAGCACACCAGTATTTCTAAGTACACATTTTAAATGAGCAGA  350

seq1  ATTTGCTGAAAGCAACAGATGATCTCTCTCACCACTCTCTCCAATTAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTGAAAGCAACAGATGATCTCTCTCACCACTCTCTCCAATTAAAC  400

seq1  CAATACAGACATAAGGAGAAAATGGTCTTAATAGATGGTGACAACACCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACAGACATAAGGAGAAAATGGTCTTAATAGATGGTGACAACACCAG  450

seq1  TGCTTTTACTGTAATATAAATAGCATGTTGCTATTTTGCTGATGCCCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTACTGTAATATAAATAGCATGTTGCTATTTTGCTGATGCCCATT  500

seq1  TTTGCATATTCAGTTGCATTATTAGTAGCCACAAACATGAAATAATCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATATTCAGTTGCATTATTAGTAGCCACAAACATGAAATAATCTCT  550

seq1  CCACATATTCATGTAATATTAACCTAGTATCATTTTCATTTTGCAACTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATATTCATGTAATATTAACCTAGTATCATTTTCATTTTGCAACTTA  600

seq1  GCAGGGATCCTAAAGTGACACAAAGTAAGATCAAGGACAATTCCATCAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGATCCTAAAGTGACACAAAGTAAGATCAAGGACAATTCCATCAAC  650

seq1  ATCTGAATCCAGCACTGGAGACTCACAGATGATTCTTCAAGTTTTCAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAATCCAGCACTGGAGACTCACAGATGATTCTTCAAGTTTTCAGCT  700

seq1  CTTATCAAAGGTGTGCAAATCTCATTTCATTATGGTGTGCAACCTTTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCAAAGGTGTGCAAATCTCATTTCATTATGGTGTGCAACCTTTCCA  750

seq1  CCTCAAACAGGACATGTTCCTCTTTATTTCCTTAAAAATGCAGCATCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAACAGGACATGTTCCTCTTTATTTCCTTAAAAATGCAGCATCTAT  800

seq1  GACTCGCTTGCCCCAGCTTTTCTCAACTGACTGGTATCTTCTTTCCAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCGCTTGCCCCAGCTTTTCTCAACTGACTGGTATCTTCTTTCCAGGT  850

seq1  CTATTTTCAATCTGTGCTCTTCCTCTGTGCCACTAAACATAACTAAATAA  900
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTC-ATCTGTGCTCTTCCTCTGTGCCACTAAACATAACTAAATAA  899

seq1  TGTTTTAAGAGATACGACGAAAGGATGGACCATCTAGAGACTGCCATACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAAGAGATACGACGAAAGGATGGACCATCTAGAGACTGCCATACC  949

seq1  CGGGGATCCATCCCATAATCAGCCTCCAAACGCTGACACCATTGCATACA  1000
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CGGGGATCCATCCCATAATCAGCCT-CAAACGCTGACACCATTGCATACA  998

seq1  CTAGCAAGATTTTGCTGAAAGGACCCAGATATAGCTGTCTCTTGTGAGAC  1050
      ||||||||| ||||||||||||| ||||||| ||||||||||||||||||
seq2  CTAGCAAGA-TTTGCTGAAAGGA-CCAGATAAAGCTGTCTCTTGTGAGAC  1046

seq1  TCTGCCAGGGCCTAGCAAACACAGAAGTGGAT-GCTCAC-AGTCAGCTAT  1098
      |||| || ||||||||||||||| || ||||| |||||| ||||||||||
seq2  TCTG-CAAGGCCTAGCAAACACA-AAATGGATAGCTCACAAGTCAGCTAT  1094

seq1  TGGATGG-ATCACAGGGCCTGCAATGGAGGAGCTAGAGAAAGTACCCAAG  1147
      ||||||| | ||||||  ||||| ||||||| |||   ||||||||||||
seq2  TGGATGGAAACACAGG--CTGCATTGGAGGAACTAAGAAAAGTACCCAAG  1142

seq1  GA  1149
      ||
seq2  GA  1144