BAC Information

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BAC

Clone NameB6Ng01-064J10
Chromosome4 (Build37)
Map Location 103,972,221 - 104,094,116
singlet/doubletdoublet
Overlap geneDab1
Upstream gene4930456L15Rik, Oma1, LOC665451, LOC100039940, EG665460, LOC622315
Downstream geneC8b, C8a, 1700024P16Rik, Prkaa2, LOC100039513, Ppap2b, LOC433742
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064J10.bB6Ng01-064J10.g
ACCDH884331DH884332
length1,0991,029
definitionDH884331|Mus musculus domesticus DNA, BAC clone: B6Ng01-064J10, 5' end.DH884332|Mus musculus domesticus DNA, BAC clone: B6Ng01-064J10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,972,221 - 103,973,331)(104,093,063 - 104,094,116)
sequence
gaattccatgcatgtacaggctcaagatgcaacaaactccacccagattg
catttccagtgcagtcatcttgaaccagatccaaatgtctgtcacttcac
ttcttcacgtaggtctcggtgcctctcgtatccagcaaactggaaagggc
tcctggttgggtctctagaattcacaatttattactacatcagatcctgt
tttcccaggttaaaaataagctaaaatctgagtattcttttgccatacac
tttccctcaagcctcatgtaattcctgagcaaagcctctaacttctcatc
ttaagtttgttttgatacacccagtttttgcacttccactctctcgacac
aagcaccagctgctgccatctccattctaggactgctgtggttgtctctt
gactgccattatgatagcccccttctagtttaccttccacacaatactct
ctctatagatagatagatagatagatagatagatagatagatagatagat
agatagatagatagatagatagacacacacacacatatacatatatacat
tacaggactgattgatctctgctctgattaaagtcctcaacagttttctg
tgtctggcaggttgaaggacatcttcaccatttcctaacaacctctctgt
gatctgacttatgctcccgggtccactccccaccccagtgatcatggccc
ctcccaccactgctctctgctccaggcatgtggcaagcattcctctctat
tggaacatcaagttgtcatcaatgatttcttaaccatctgagtgtgcaca
gaaagttccttctttggggaaaaacatcccaggatctcaagaccagttca
cttctttgcaaatatatgccccctgccactgctattttgatggctatttg
acgagtgtctgtatccaccactagactagaaacacatgatgatggagcaa
aatgtctctgtgaccactgctgttgtcttacactgccctatgttaaatga
aacaaataaatgcacgtatactgtaaaaataatgttttctatgaagaaga
agcagtgaagttattaaaatggagcaagtaggggtggctggggtctttc
gaattctctggtatttgtagctcagctgttccgccgcaccagctgctcgg
aatgttcatacgtggcctagctcggtgcagaatctccccatcctatattc
atttcatcagcttcaaatctaatttcactctcagagttgttttatgggtt
tttttttttttttttttttgttttttgttttttttttggagaagccaaaa
attgaacatccatccctatttataggaaagggacatttcctacaaaagtg
cctcgtaaggactcagatcctgtttcctcagcagttttccctcttgatca
cgtgaggtctattttgacttcttccctggttggaacacatctcagaggca
caagctgccagagggaaggatgaagcttatgaatgggcctatcctccagg
atgtgctaccataatgggatgcggtacaactgcgtgatgggagaaaagaa
ctagtgttggttgcacatgcaaagcacaagtctagtggaggtttagataa
ctatcccaaggagacatttgaggagtagaaaaagattagcatgggaaatg
gaaactaaagggcaacctgtcagacttggaatagttagagatgagccacg
ggagtacaaaacctgggtacatggcctacagtgccctctgctacttctag
aagcttgggaaccactctccaatctccagcacagctatctacaagtgaaa
tgaccagtcagaagcaagatatcagactacataaccaaaaagacttttcg
actcaagagatcgaaggatacaagaacattatcatgacagtaaacattac
tacaaaatagctccatgtcccatgactagatcagatataaagactgctct
acaatagaatactatgcatcagtagaaagcaatgacttacatatataccc
attaagtaattcttgaaaatatgaggttgaagtcccagatattttacata
ttatcatgtataagtttagatccagagtaaatggtataagtgctggataa
tagtaaatcaccaaaggttattattaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_103972221_103973331
seq2: B6Ng01-064J10.b_42_1140

seq1  GAATTCCATGCATGTACAGGCTCAAGATGCAACAAACTCCACCCAGATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCATGTACAGGCTCAAGATGCAACAAACTCCACCCAGATTG  50

seq1  CATTTCCAGTGCAGTCATCTTGAACCAGATCCAAATGTCTGTCACTTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCAGTGCAGTCATCTTGAACCAGATCCAAATGTCTGTCACTTCAC  100

seq1  TTCTTCACGTAGGTCTCGGTGCCTCTCGTATCCAGCAAACTGGAAAGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCACGTAGGTCTCGGTGCCTCTCGTATCCAGCAAACTGGAAAGGGC  150

seq1  TCCTGGTTGGGTCTCTAGAATTCACAATTTATTACTACATCAGATCCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTTGGGTCTCTAGAATTCACAATTTATTACTACATCAGATCCTGT  200

seq1  TTTCCCAGGTTAAAAATAAGCTAAAATCTGAGTATTCTTTTGCCATACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAGGTTAAAAATAAGCTAAAATCTGAGTATTCTTTTGCCATACAC  250

seq1  TTTCCCTCAAGCCTCATGTAATTCCTGAGCAAAGCCTCTAACTTCTCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTCAAGCCTCATGTAATTCCTGAGCAAAGCCTCTAACTTCTCATC  300

seq1  TTAAGTTTGTTTTGATACACCCAGTTTTTGCACTTCCACTCTCTCGACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTTGTTTTGATACACCCAGTTTTTGCACTTCCACTCTCTCGACAC  350

seq1  AAGCACCAGCTGCTGCCATCTCCATTCTAGGACTGCTGTGGTTGTCTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCAGCTGCTGCCATCTCCATTCTAGGACTGCTGTGGTTGTCTCTT  400

seq1  GACTGCCATTATGATAGCCCCCTTCTAGTTTACCTTCCACACAATACTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCCATTATGATAGCCCCCTTCTAGTTTACCTTCCACACAATACTCT  450

seq1  CTCTATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT  500
      ||||    ||||||||||||||||||||||||||||||||||||||||||
seq2  CTCT----ATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT  496

seq1  AGATAGATAGATAGATAGATAGATAGACACACACACACATATACATATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGATAGATAGATAGATAGATAGACACACACACACATATACATATAT  546

seq1  ACATTACAGGACTGATTGATCTCTGCTCTGATTAAAGTCCTCAACAGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTACAGGACTGATTGATCTCTGCTCTGATTAAAGTCCTCAACAGTTT  596

seq1  TCTGTGTCTGGCAGGTTGAAGGACATCTTCACCATTTCCTAACAACCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTCTGGCAGGTTGAAGGACATCTTCACCATTTCCTAACAACCTCT  646

seq1  CTGTGATCTGACTTATGCTCCCGGGTCCACTCCCCACCCCAGTGATCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATCTGACTTATGCTCCCGGGTCCACTCCCCACCCCAGTGATCATG  696

seq1  GCCCCTCCCACCACTGCTCTCTGCTCCAGGCATGTGGCAAGCATTCCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTCCCACCACTGCTCTCTGCTCCAGGCATGTGGCAAGCATTCCTCT  746

seq1  CTATTGGAACATCAAGTTGTCATCAATGATTTCTTAACCATCTGAGTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGGAACATCAAGTTGTCATCAATGATTTCTTAACCATCTGAGTGTG  796

seq1  CACAGAAAGTTCCTTCTTTGGGGAAAAACATCCCAGGATCTCAAGACCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAAGTTCCTTCTTTGGGGAAAAACATCCCAGGATCTCAAGACCAG  846

seq1  TTCACTTC-TTGCAAATATATGCCCCCTGCCACTGCTATTTTGATGGCTA  899
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTCTTTGCAAATATATGCCCCCTGCCACTGCTATTTTGATGGCTA  896

seq1  TTTGACGAGTGTCTGTATCCACCACTAGACTAGAAACACCATGATGATGG  949
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTTGACGAGTGTCTGTATCCACCACTAGACTAGAAACA-CATGATGATGG  945

seq1  AGCAGAATGTCTCTGTGACCCACTGCTGTTGTCCTAACACCTGCCCTAGT  999
      |||| ||||||||||||| ||||||||||||| || ||| |||||||| |
seq2  AGCAAAATGTCTCTGTGA-CCACTGCTGTTGT-CTTACA-CTGCCCTA-T  991

seq1  GTTTAAATGAAACAAATAAATGCACGTATACTGTTAGAAATAATGGTTTC  1049
      | ||||||||||||||||||||||||||||||| || |||||||| ||||
seq2  G-TTAAATGAAACAAATAAATGCACGTATACTG-TAAAAATAATGTTTTC  1039

seq1  TATGAAGAAG-AGCAGTGAAGTATTGAGAATGGAGCAAAGTTAGGGTGTG  1098
      |||||||||| |||||||||||  | | |||||||| ||||  ||||| |
seq2  TATGAAGAAGAAGCAGTGAAGTTATTAAAATGGAGC-AAGTAGGGGTG-G  1087

seq1  CTGGGGTTCTTTC  1111
      |||||| ||||||
seq2  CTGGGG-TCTTTC  1099

seq1: chr4_104093063_104094116
seq2: B6Ng01-064J10.g_70_1098 (reverse)

seq1  TTTTAAAATAAATAAACCCTTTGGTGATTTTTACTATATATCTCAGCAAC  50
      ||||||    |||||  ||||||||||  |||||||| |||| |||| ||
seq2  TTTTAA---TAATAA--CCTTTGGTGA--TTTACTAT-TATC-CAGC-AC  40

seq1  TTATACCATTTTACTTCCTTGATCTTAAACTTTATACCAATGGAATTATA  100
      |||||||| ||||||  || |||| ||||| ||||||  |||  || |||
seq2  TTATACCA-TTTACT--CTGGATC-TAAAC-TTATAC--ATG--ATAATA  81

seq1  TTGTAAAATAATCTTGGGACTTCAACCCTCATATTTTCAAGATTTACTTA  150
       |||||||| ||| ||||||||||| |||||||||||||||| |||||||
seq2  -TGTAAAAT-ATC-TGGGACTTCAA-CCTCATATTTTCAAGAATTACTTA  127

seq1  ATGGGTATATATGTAAGTCATTGCTTTCTACTGATGCATAGTATTCTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTATATATGTAAGTCATTGCTTTCTACTGATGCATAGTATTCTATT  177

seq1  GTAGAGGCAGTCTTTATATCCTGATCTAGTCATGGGACATGGAGCTATTT  250
      ||||| ||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTAGA-GCAGTCTTTATAT-CTGATCTAGTCATGGGACATGGAGCTATTT  225

seq1  TGTAGTAATGTTTTACTGTCATGATAATGTTCTTGTATCCTTCGATCTCT  300
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTAATG-TTTACTGTCATGATAATGTTCTTGTATCCTTCGATCTCT  274

seq1  TGAGTTCGAAAGTCTTTTTGGTTATGTAGTCTGATATCTTGCTTCTGACT  350
      |||||   ||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCGAAAAGTCTTTTTGGTTATGTAGTCTGATATCTTGCTTCTGACT  324

seq1  GGTCATTTCACTTGTAGATAGCTGTGCTGGAGATTGGAGAGTGGTTCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATTTCACTTGTAGATAGCTGTGCTGGAGATTGGAGAGTGGTTCCCA  374

seq1  AGCTTCTAGAAGTAGCAGAGGGCACTGTAGGCCATGTACCCAGGTTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTAGAAGTAGCAGAGGGCACTGTAGGCCATGTACCCAGGTTTTGT  424

seq1  ACTCCCGTGGCTCATCTCTAACTATTCCAAGTCTGACAGGTTGCCCTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCGTGGCTCATCTCTAACTATTCCAAGTCTGACAGGTTGCCCTTTA  474

seq1  GTTTCCATTTCCCATGCTAATCTTTTTCTACTCCTCAAATGTCTCCTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCATTTCCCATGCTAATCTTTTTCTACTCCTCAAATGTCTCCTTGG  524

seq1  GATAGTTATCTAAACCTCCACTAGACTTGTGCTTTGCATGTGCAACCAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTTATCTAAACCTCCACTAGACTTGTGCTTTGCATGTGCAACCAAC  574

seq1  ACTAGTTCTTTTCTCCCATCACGCAGTTGTACCGCATCCCATTATGGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTTCTTTTCTCCCATCACGCAGTTGTACCGCATCCCATTATGGTAG  624

seq1  CACATCCTGGAGGATAGGCCCATTCATAAGCTTCATCCTTCCCTCTGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCCTGGAGGATAGGCCCATTCATAAGCTTCATCCTTCCCTCTGGCA  674

seq1  GCTTGTGCCTCTGAGATGTGTTCCAACCAGGGAAGAAGTCAAAATAGACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGCCTCTGAGATGTGTTCCAACCAGGGAAGAAGTCAAAATAGACC  724

seq1  TCACGTGATCAAGAGGGAAAACTGCTGAGGAAACAGGATCTGAGTCCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGTGATCAAGAGGGAAAACTGCTGAGGAAACAGGATCTGAGTCCTTA  774

seq1  CGAGGCACTTTTGTAGGAAATGTCCCTTTCCTATAAATAGGGATGGATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGCACTTTTGTAGGAAATGTCCCTTTCCTATAAATAGGGATGGATGT  824

seq1  TCAATTTTTGGCTTCTCCAAAAAAAAAACAAAAAAC-AAAAAAAAAAAAA  899
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCAATTTTTGGCTTCTCCAAAAAAAAAACAAAAAACAAAAAAAAAAAAAA  874

seq1  AAAAAAACCCATAAAACAACTCTGAGAGTGAAATTAGATTTGAAGCTGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACCCATAAAACAACTCTGAGAGTGAAATTAGATTTGAAGCTGAT  924

seq1  GAAATGAATATAGGATGGGGAGATTCTGCACCGAGCTAGGCCACGTATGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAATATAGGATGGGGAGATTCTGCACCGAGCTAGGCCACGTATGA  974

seq1  ACATTCCGAGCAGCTGGTGCGGCGGAACAGCTGAGCTACAAATACCAGAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCGAGCAGCTGGTGCGGCGGAACAGCTGAGCTACAAATACCAGAG  1024

seq1  AATTC  1054
      |||||
seq2  AATTC  1029