BAC Information

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BAC

Clone NameB6Ng01-064O04
Chromosome4 (Build37)
Map Location 67,809,954 - 67,912,122
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039379, Hmgb1-rs18, LOC433715
Downstream geneTcp1-ps1, Dbc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064O04.bB6Ng01-064O04.g
ACCDH884539DH884540
length2691,101
definitionDH884539|Mus musculus domesticus DNA, BAC clone: B6Ng01-064O04, 5' end.DH884540|Mus musculus domesticus DNA, BAC clone: B6Ng01-064O04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,911,854 - 67,912,122)(67,809,954 - 67,811,066)
sequence
aaaatcatttggcttggacaaatatcattcatctggtgtttctactggcc
acagctcttttgtgctactaaaattgtttaaattcaattaacctaaggcc
catacatttactttgataatggggaagtttgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtagacggatagatttatggtataggta
tatatttcagtatcgctcttcaatctcttgacctgttactctgttaaatt
gattatcgattgaggctca
gaattccacatccatgagtgcctagtatatgtagtgttttagccaaatgt
cctctattaaaaatctgcgtttactaggattatgtaatttatttgaattt
atatcttatttgctttctaagtctatcaagtgaagaaactgatgttgatt
cttagtttgttgggtgatagtttgaatttctagttctgttgtgaaaacat
tcagttcacatcatgaaaataaaacatggtatctgcacttttaaaaatgt
ttccaattatagagagaaacaatgaataaaattgctacatacattttaat
gttatgacatatactttgctttaatccatatccacgtgggcttcttacat
atttcaaatgagcttttatggttcactgaaatcactttctgtttggttcc
gggacaagtcgttaatgccttaccatactcacaggaaatcatattcagca
ccacgggcagagcagacctgctcctttctgaactacagctgtttcttgaa
ttattttttttcctccactcaagcatccagacacatgtctctctcttaat
tacagaaagaactgttacaagacgtcttgaattttaacatctgattttaa
aagtgaggaaaatacactaaaattcaaatgataggatatcttaagtactt
gtgaatgttcaaaacaatattcctgatattatatagacatttatttctag
acattcacattatacagagaggaaaataaaagaagggatataactgatta
atgatctaaaaataagatactggagtagtatgcagatagttatcagtggt
ggcaagatgaggctcgggtgttgtcatttaagaatcatcgaggcacactg
gagaagttcattttatgagtctttgagtagtcttgcattatggatttaaa
aacaatcacactgatatttgaaaagcatagaccaaagttctgaccagctc
ttcatttgagaggcagagaaagatagatactacatttctttatgatgtgt
caaacttataaatacttaataaattttaattcactgaatgggataatagg
tcttcaggagtggcatatgcgacttaaaggaaatcatagcttgcctggaa
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_67911854_67912122
seq2: B6Ng01-064O04.b_56_324 (reverse)

seq1  TGAGCCTCAATCGATAATCAATTTAACAGAGTAACAGGTCAAGAGATTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTCAATCGATAATCAATTTAACAGAGTAACAGGTCAAGAGATTGA  50

seq1  AGAGCGATACTGAAATATATACCTATACCATAAATCTATCTGTCTACACA  100
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGAGCGATACTGAAATATATACCTATACCATAAATCTATCCGTCTACACA  100

seq1  CACACACACACACACACACACACACACACACACACACACAAACTTCCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACAAACTTCCCCA  150

seq1  TTATCAAAGTAAATGTATGGGCCTTAGGTTAATTGAATTTAAACAATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAAAGTAAATGTATGGGCCTTAGGTTAATTGAATTTAAACAATTTT  200

seq1  AGTAGCACAAAAGAGCTGTGGCCAGTAGAAACACCAGATGAATGATATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCACAAAAGAGCTGTGGCCAGTAGAAACACCAGATGAATGATATTT  250

seq1  GTCCAAGCCAAATGATTTT  269
      |||||||||||||||||||
seq2  GTCCAAGCCAAATGATTTT  269

seq1: chr4_67809954_67811066
seq2: B6Ng01-064O04.g_68_1168

seq1  GAATTCCACATCCATGAGTGCCTAGTATATGTAGTGTTTTAGCCAAATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACATCCATGAGTGCCTAGTATATGTAGTGTTTTAGCCAAATGT  50

seq1  CCTCTATTAAAAATCTGCGTTTACTAGGATTATGTAATTTATTTGAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATTAAAAATCTGCGTTTACTAGGATTATGTAATTTATTTGAATTT  100

seq1  ATATCTTATTTGCTTTCTAAGTCTATCAAGTGAAGAAACTGATGTTGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTATTTGCTTTCTAAGTCTATCAAGTGAAGAAACTGATGTTGATT  150

seq1  CTTAGTTTGTTGGGTGATAGTTTGAATTTCTAGTTCTGTTGTGAAAACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTTGTTGGGTGATAGTTTGAATTTCTAGTTCTGTTGTGAAAACAT  200

seq1  TCAGTTCACATCATGAAAATAAAACATGGTATCTGCACTTTTAAAAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCACATCATGAAAATAAAACATGGTATCTGCACTTTTAAAAATGT  250

seq1  TTCCAATTATAGAGAGAAACAATGAATAAAATTGCTACATACATTTTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATTATAGAGAGAAACAATGAATAAAATTGCTACATACATTTTAAT  300

seq1  GTTATGACATATACTTTGCTTTAATCCATATCCACGTGGGCTTCTTACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGACATATACTTTGCTTTAATCCATATCCACGTGGGCTTCTTACAT  350

seq1  ATTTCAAATGAGCTTTTATGGTTCACTGAAATCACTTTCTGTTTGGTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAATGAGCTTTTATGGTTCACTGAAATCACTTTCTGTTTGGTTCC  400

seq1  GGGACAAGTCGTTAATGCCTTACCATACTCACAGGAAATCATATTCAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAAGTCGTTAATGCCTTACCATACTCACAGGAAATCATATTCAGCA  450

seq1  CCACGGGCAGAGCAGACCTGCTCCTTTCTGAACTACAGCTGTTTCTTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGGCAGAGCAGACCTGCTCCTTTCTGAACTACAGCTGTTTCTTGAA  500

seq1  TTATTTTTTTTCCTCCACTCAAGCATCCAGACACATGTCTCTCTCTTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTTTCCTCCACTCAAGCATCCAGACACATGTCTCTCTCTTAAT  550

seq1  TACAGAAAGAACTGTTACAAGACGTCTTGAATTTTAACATCTGATTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAAGAACTGTTACAAGACGTCTTGAATTTTAACATCTGATTTTAA  600

seq1  AAGTGAGGAAAATACACTAAAATTCAAATGATAGGAAATCTTAAGTACTT  650
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAGTGAGGAAAATACACTAAAATTCAAATGATAGGATATCTTAAGTACTT  650

seq1  GTGAATGTTCAAAACAATATTCCTGATATTATATAGACATTTATTTCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATGTTCAAAACAATATTCCTGATATTATATAGACATTTATTTCTAG  700

seq1  ACATTCACATTATACAGAGAGGAAAATAAAAGAAGGGATATAACTGATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCACATTATACAGAGAGGAAAATAAAAGAAGGGATATAACTGATTA  750

seq1  ATGATCTAAAAATAAGATACTGGAGTAGTTATGCAGATAGTTATCAGTGG  800
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATGATCTAAAAATAAGATACTGGAGTAG-TATGCAGATAGTTATCAGTGG  799

seq1  TGGCAAGATGAGGCTC-GGTGTTGTCATTTAAGAATCATCGAGGCACACT  849
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGGCAAGATGAGGCTCGGGTGTTGTCATTTAAGAATCATCGAGGCACACT  849

seq1  GGAGAAAGTTTCATTTATGAGTCTTTGAGTAGTCTTGCATTATGGATTTA  899
      |||| |||||   |||||||||||||||||||||||||||||||||||| 
seq2  GGAG-AAGTTCATTTTATGAGTCTTTGAGTAGTCTTGCATTATGGATTT-  897

seq1  AAAAACAATCACACTGATATTTGAAAAGCAATAAGACCAAAGTTCTGACC  949
      ||||||||||||||||||||||||||||||   |||||||||||||||||
seq2  AAAAACAATCACACTGATATTTGAAAAGCA--TAGACCAAAGTTCTGACC  945

seq1  AGCTCTTCATTTTGAGAAGCCAAGAGAAAGATAGATAACTACATTTCTTT  999
      ||||||||| ||||||| ||  |||||||||||||| |||||||||||||
seq2  AGCTCTTCA-TTTGAGAGGC--AGAGAAAGATAGAT-ACTACATTTCTTT  991

seq1  ATGAATGTGTCAAATACTTATTAAATACTTAATACATTTTAAAATCACTG  1049
      ||| |||||||||  ||||| ||||||||||||| ||||| || ||||||
seq2  ATG-ATGTGTCAA--ACTTA-TAAATACTTAATAAATTTT-AATTCACTG  1036

seq1  AAT-GGATAATAAGTCTTCAGGAGTTGCCAATGCAGACTTTATAGGAAAT  1098
      ||| |||||||| |||||||||||| ||  |||| ||| ||| |||||||
seq2  AATGGGATAATAGGTCTTCAGGAGTGGCATATGC-GAC-TTAAAGGAAAT  1084

seq1  CATAGCT--GCTGGAAA  1113
      |||||||   |||||||
seq2  CATAGCTTGCCTGGAAA  1101