BAC Information

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BAC

Clone NameB6Ng01-065D04
Chromosome4 (Build37)
Map Location 109,208,148 - 109,387,812
singlet/doubletdoublet
Overlap geneCdkn2c, LOC100040307, Faf1
Upstream geneZcchc11, Prpf38a, Orc1l, Cc2d1b, Zfyve9, LOC100040326, 3110021N24Rik, Btf3l4, Txndc12, Kti12, Rab3b, Nrd1, Osbpl9, Calr4, Eps15, LOC666144, 4922503N01Rik, Rnf11, 4930522H14Rik
Downstream geneDmrta2, Elavl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065D04.bB6Ng01-065D04.g
ACCDH884746DH884747
length1,1321,043
definitionDH884746|Mus musculus domesticus DNA, BAC clone: B6Ng01-065D04, 5' end.DH884747|Mus musculus domesticus DNA, BAC clone: B6Ng01-065D04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,386,663 - 109,387,812)(109,208,148 - 109,209,196)
sequence
gaattcaagcctggtagccacgaaaggcagagctgcctacaccttttgga
accagacatggaacaggatttggaagtctgtccccctcatccaagatctc
agggggatgcatatcatgaaacctatacaaaacggagcataacagaagga
agttacatggttgaaaatgtgcctttgaagaagagactgggaaccaaccc
cgttttgttccttggatggtaggtactagatagctacttcttttgcaatg
tgctcctaccatggtgtactgccttatcacatgcctaaaattaacagggt
gaaccaataatgagcgaaaaccagagatcactgtgttacattttcttttc
ctttttccttttccttgtttggtggagacagggcctcactgtgttgtcct
ggctggccctgaactcactacatagagcaagttgccctgaaacttaaaaa
aaaaaaaaaaatcaacctgcctctctctgtctcctgagggatgtgattag
gggtatatgccaccgcatccatcttgtgacatgtttttttattcatcata
cctatctagtaaaaaactagatttatgacattcatgaacagacaatgaat
aagtttttcattataatagtttctcataatagctcaccacattcctgatt
acagtgccaaacacatatttctttatagttctctaataattatgcataaa
ataaaggtgtaagtgataaaaatgtgaaaatttaaaaacaccctaagtta
aaatcttaaattacaaaaatggtctataaaatttgtgaaatgtagaccaa
tgacagtcctaattcagacacaaaataaacacagaaaatggagtacagca
tattaaatttccatgacagttggactagtaatgtgctacgccacacacac
actaagtgaataatgtataaaagaggagaaatggtaaatgcaccagtggg
ggaaaaagtaccgtaacttgcatgaaataaagtggagattaattgctagc
taaagatgatttcaaatgaaaaagttaaagtgcaaaaacactatttatta
aagatgtgtacttgtaggaaggaaactttcctccatggcttaagaccacg
cttcaatacccagaacctggagaaatagaatc
gaattcagcctggaaaccagcacagcaggatggtcccgaaggagggcaga
gctctatctgcaaacgtcccttagtggtgttgtccatttggacagcagag
agaaaacagctgctccctacctccaggaaagtgctgaaggacaaacctgg
gtggaggtgggggacaaagaatttctaccctctttctcttcagtagagag
tttgaagttttttctcattatttctaccatcaccccatacaattgtctct
ttatccctttgttacattcgtttattgttttacctgcgtgtgtatatgtg
tactgtgaatatatctggtgacaggtcagaagagggtttcagaatcctta
ggactggactaacagaaggttttgagctgccacaggactctgggaatcaa
aagcaggtaagagattggctaatccagaggacctacatttaattcctagc
acttgtatggtagcccgcaaccatctaacttcagttccacgagatctaat
gcccactgctggcttccaaaagcactgcaagagcattgagctgacaaaat
acccatgtacataaaaataaacaataaattctttttaaaaagagttagta
cccgagatataagatacaatttgcaaaacacatgaaactgaagaagaatg
aagaccaaagtgtggacactttgccccttcttagaattggaaacaatcac
ccatggaaggatttcagagacaaagtttggagctgagacaaaaggatgga
ccatctagagactgccatatccagggatccatcccataattagcctccaa
acgatgacaccattgcatacactagcaagcgtttgctgaaaggaccctga
tatagctgtctcttgtgagactatgccggggcctagcaaacacagaagtg
gatgctcacagtcagctattggatggatcacaggccccccaatggaggaa
ctagagaaagtatccaaggagctaagagtctgcaccctgtaggtgcacaa
cattatgaactaaccagtacccggagctctgtgactctagctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_109386663_109387812
seq2: B6Ng01-065D04.b_47_1178 (reverse)

seq1  GATTCTTTATTTTCTCTCAGGTTTCTGGGGTATTGAAGCTGGGTCTTATG  50
      ||||||    |||||| |||| |||| ||||||||||||  ||||||| |
seq2  GATTCT---ATTTCTC-CAGG-TTCT-GGGTATTGAAGCGTGGTCTTAAG  44

seq1  CATAGGAGGAAAGTTTTCTATCATCAAGTTACACCTCTTT-ATATATAGT  99
      |   |||||||||||| ||  |  |||| ||||| ||||| ||| |||||
seq2  CCATGGAGGAAAGTTTCCTTCCTACAAG-TACACATCTTTAATAAATAGT  93

seq1  GTTTTTGCAACTTTAACTTTTTCATTTGAAATCATCTTTTAGCTAGCAAT  149
      |||||||| ||||||||||||||||||||||||||| |||||||||||||
seq2  GTTTTTGC-ACTTTAACTTTTTCATTTGAAATCATC-TTTAGCTAGCAAT  141

seq1  ATATCTTCCACTTTTATTTTCATTGCAAGTTACGGTACTTTTTTCCCCCA  199
        ||| ||||||||   ||||| ||||||||||||||| |||||||||||
seq2  TAATC-TCCACTTT--ATTTCA-TGCAAGTTACGGTAC-TTTTTCCCCCA  186

seq1  CTTGGTGCATTTTACCATTTCTCCTCTTTTTATACATTATTCACTTAGTG  249
      | ||||||| |||||||||||||||| |||||||||||||||||||||||
seq2  C-TGGTGCA-TTTACCATTTCTCCTC-TTTTATACATTATTCACTTAGTG  233

seq1  TGTGTGTGGCGTAGCACATTACTAGTTCAAACTGTCATGGAAATTTTAAT  299
      ||||||||||||||||||||||||| || |||||||||||||| ||||||
seq2  TGTGTGTGGCGTAGCACATTACTAG-TCCAACTGTCATGGAAA-TTTAAT  281

seq1  ATGCTGTACTCCATTTTCTGTGTTTATTTTGTGTCTGAATTAGGACTGTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTACTCCATTTTCTGTGTTTATTTTGTGTCTGAATTAGGACTGTC  331

seq1  ATTGGTCTACATTTCACAAATTTTATAGACCATTTTTGTAATTTAAGATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTCTACATTTCACAAATTTTATAGACCATTTTTGTAATTTAAGATT  381

seq1  TTAACTTAGGGTGTTTTTAAATTTTCACATTTTTATCACTTACACCTTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTAGGGTGTTTTTAAATTTTCACATTTTTATCACTTACACCTTTA  431

seq1  TTTTATGCATAATTATTAGAGAACTATAAAGAAATATGTGTTTGGCACTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGCATAATTATTAGAGAACTATAAAGAAATATGTGTTTGGCACTG  481

seq1  TAATCAGGAATGTGGTGAGCTATTATGAGAAACTATTATAATGAAAAACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGGAATGTGGTGAGCTATTATGAGAAACTATTATAATGAAAAACT  531

seq1  TATTCATTGTCTGTTCATGAATGTCATAAATCTAGTTTTTTACTAGATAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATTGTCTGTTCATGAATGTCATAAATCTAGTTTTTTACTAGATAG  581

seq1  GTATGATGAATAAAAAAACATGTCACAAGATGGATGCGGTGGCATATACC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGATGAATAAAAAAACATGTCACAAGATGGATGCGGTGGCATATACC  631

seq1  CCTAATCACATCCCTCAGGAGACAGAGAGAGGCAGGTTGATTTTTTTTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATCACATCCCTCAGGAGACAGAGAGAGGCAGGTTGATTTTTTTTTT  681

seq1  TTTTTTAAGTTTCAGGGCAACTTGCTCTATGTAGTGAGTTCAGGGCCAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAGTTTCAGGGCAACTTGCTCTATGTAGTGAGTTCAGGGCCAGC  731

seq1  CAGGACAACACAGTGAGGCCCTGTCTCCACCAAACAAGGAAAAGGAAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAACACAGTGAGGCCCTGTCTCCACCAAACAAGGAAAAGGAAAAA  781

seq1  GGAAAAGAAAATGTAACACAGTGATCTCTGGTTTTCGCTCATTATTGGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGAAAATGTAACACAGTGATCTCTGGTTTTCGCTCATTATTGGTT  831

seq1  CACCCTGTTAATTTTAGGCATGTGATAAGGCAGTACACCATGGTAGGAGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGTTAATTTTAGGCATGTGATAAGGCAGTACACCATGGTAGGAGC  881

seq1  ACATTGCAAAAGAAGTAGCTATCTAGTACCTACCATCCAAGGAACAAAAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCAAAAGAAGTAGCTATCTAGTACCTACCATCCAAGGAACAAAAC  931

seq1  GGGGTTGGTTCCCAGTCTCTTCTTCAAAGGCACATTTTCAACCATGTAAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTGGTTCCCAGTCTCTTCTTCAAAGGCACATTTTCAACCATGTAAC  981

seq1  TTCCTTCTGTTATGCTCCGTTTTGTATAGGTTTCATGATATGCATCCCCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTGTTATGCTCCGTTTTGTATAGGTTTCATGATATGCATCCCCC  1031

seq1  TGAGATCTTGGATGAGGGGGACAGACTTCCAAATCCTGTTCCATGTCTGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCTTGGATGAGGGGGACAGACTTCCAAATCCTGTTCCATGTCTGG  1081

seq1  TTCCAAAAGGTGTAGGCAGCTCTGCCTTTCGTGGCTACCAGGCTTGAATT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAAGGTGTAGGCAGCTCTGCCTTTCGTGGCTACCAGGCTTGAATT  1131

seq1  C  1150
      |
seq2  C  1132

seq1: chr4_109208148_109209196
seq2: B6Ng01-065D04.g_70_1112

seq1  GAATTCAGCCTGGAAACCAGCACAGCAGGATGGTCCCGAAGGAGGGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCTGGAAACCAGCACAGCAGGATGGTCCCGAAGGAGGGCAGA  50

seq1  GCTCTATCTGCAAACGTCCCTTAGTGGTGTTGTCCATTTGGACAGCAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTATCTGCAAACGTCCCTTAGTGGTGTTGTCCATTTGGACAGCAGAG  100

seq1  AGAAAACAGCTGCTCCCTACCTCCAGGAAAGTGCTGAAGGACAAACCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACAGCTGCTCCCTACCTCCAGGAAAGTGCTGAAGGACAAACCTGG  150

seq1  GTGGAGGTGGGGGACAAAGAATTTCTACCCTCTTTCTCTTCAGTAGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGTGGGGGACAAAGAATTTCTACCCTCTTTCTCTTCAGTAGAGAG  200

seq1  TTTGAAGTTTTTTCTCATTATTTCTACCATCACCCCATACAATTGTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGTTTTTTCTCATTATTTCTACCATCACCCCATACAATTGTCTCT  250

seq1  TTATCCCTTTGTTACATTCGTTTATTGTTTTACCTGCGTGTGTATATGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCCTTTGTTACATTCGTTTATTGTTTTACCTGCGTGTGTATATGTG  300

seq1  TACTGTGAATATATCTGGTGACAGGTCAGAAGAGGGTTTCAGAATCCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGAATATATCTGGTGACAGGTCAGAAGAGGGTTTCAGAATCCTTA  350

seq1  GGACTGGACTAACAGAAGGTTTTGAGCTGCCACAGGACTCTGGGAATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGGACTAACAGAAGGTTTTGAGCTGCCACAGGACTCTGGGAATCAA  400

seq1  AAGCAGGTAAGAGATTGGCTAATCCAGAGGACCTACATTTAATTCCTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGTAAGAGATTGGCTAATCCAGAGGACCTACATTTAATTCCTAGC  450

seq1  ACTTGTATGGTAGCCCGCAACCATCTAACTTCAGTTCCACGAGATCTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTATGGTAGCCCGCAACCATCTAACTTCAGTTCCACGAGATCTAAT  500

seq1  GCCCACTGCTGGCTTCCAAAAGCACTGCAAGAGCATTGAGCTGACAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACTGCTGGCTTCCAAAAGCACTGCAAGAGCATTGAGCTGACAAAAT  550

seq1  ACCCATGTACATAAAAATAAACAATAAATTCTTTTTAAAAAGAGTTAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATGTACATAAAAATAAACAATAAATTCTTTTTAAAAAGAGTTAGTA  600

seq1  CCCGAGATATAAGATACAATTTGCAAAACACATGAAACTGAAGAAGAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGATATAAGATACAATTTGCAAAACACATGAAACTGAAGAAGAATG  650

seq1  AAGACCAAAGTGTGGACACTTTGCCCCTTCTTAGAATTGGAAACAATCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCAAAGTGTGGACACTTTGCCCCTTCTTAGAATTGGAAACAATCAC  700

seq1  CCATGGAAGGATTTACAGAGACAAAGTTTGGAGCTGAGACAAAAGGATGG  750
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCATGGAAGGATTT-CAGAGACAAAGTTTGGAGCTGAGACAAAAGGATGG  749

seq1  ACCATCTAGAGACTGCCATATCCAGGGATCCATCCCATAATTAGCCTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTAGAGACTGCCATATCCAGGGATCCATCCCATAATTAGCCTCCA  799

seq1  AACGATGACACCATTGCATACACTAGCAAGCGTTTGCTGAAAGGACCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGATGACACCATTGCATACACTAGCAAGCGTTTGCTGAAAGGACCCTG  849

seq1  ATATAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACACAGAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACACAGAAGT  899

seq1  GGATGCTCACAGTCAGCTATTGGATGGATCACAGGGCCCCCCAATGGAGG  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGATGCTCACAGTCAGCTATTGGATGGATCACA-GGCCCCCCAATGGAGG  948

seq1  AACTAGAGAAAGTATCCAAGGAGCTAAAGAGATCTGCAACCCTGTAGGTG  1000
      ||||||||||||||||||||||||| ||||| ||||| ||||||||||||
seq2  AACTAGAGAAAGTATCCAAGGAGCT-AAGAG-TCTGC-ACCCTGTAGGTG  995

seq1  CAACAACATTATGAACTAACCAGTACCCCGGAGCTCT-TGACTCTAGCTG  1049
      | ||||||||||||||||||||||| ||||||||||| ||||||||||||
seq2  C-ACAACATTATGAACTAACCAGTA-CCCGGAGCTCTGTGACTCTAGCTG  1043