BAC Information

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BAC

Clone NameB6Ng01-065D14
Chromosome4 (Build37)
Map Location 99,678,088 - 99,826,544
singlet/doubletdoublet
Overlap geneRor1
Upstream geneDock7, Angptl3, LOC665193, Atg4c, LOC665212, LOC638890, LOC100042589, Foxd3, Alg6, Itgb3bp, BC020077, Pgm2
Downstream geneUbe2u, LOC277707, LOC621573, Cachd1, LOC100039747, Raver2, Jak1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065D14.bB6Ng01-065D14.g
ACCDH884763DH884764
length349450
definitionDH884763|Mus musculus domesticus DNA, BAC clone: B6Ng01-065D14, 5' end.DH884764|Mus musculus domesticus DNA, BAC clone: B6Ng01-065D14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,678,088 - 99,678,442)(99,826,085 - 99,826,544)
sequence
ctatctatggtggtggagcctgcatttcaaaactgagtgcttctttgtca
aagatcaggtgaccataggtgtatgggtttaattctgggtcttcttggga
agaccagcagtctcaacctggacccctgggatctctcagacactaagcca
ccaaccaggctgtacacactagctgatctgagtcccccaacatgaataca
gcagaggactgccaggtctggcctcagtgagagtagatgcacataaccct
tgagagacttgaagcaccggggagtggggaggcctgtcagggtggtgggg
ttggaggtggggacatcctcttggagaaagggggaaggaggaatgggat
attcgttcgcatcatttctaacaagcattagtactaagaagaaagcagca
gattgaactacagaacatggaagacagagtccagaaaccatcccaacccc
tgtatacaggttgctagcgttgggtcacagctaaaacagagctgtcttag
tctcaatgtgtgcagtgcttgaagaaatgggatgagcagccgggacagga
gaggcggagtcccgaaggtcacctggcctctgacaccaagactcgttcag
aaagtgtagatgttaatatggagtcagtaagtatgtgtggacagccttct
caactcaaaagttcaggagaaatacaaattcccaaagagcctctctctcc
ctctccctccctccctccctccctctctccctccctccctccttctctct
ctctctctctctctctctctctctctctctccctctcttgctccctccct

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_99678088_99678442
seq2: B6Ng01-065D14.b_45_399

seq1  GAATTCCTATCTATGGTGGTGGAGCCTGCATTTCAAAACTGAGTGCTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATCTATGGTGGTGGAGCCTGCATTTCAAAACTGAGTGCTTCT  50

seq1  TTGTCAAAGATCAGGTGACCATAGGTGTATGGGTTTAATTCTGGGTCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAAAGATCAGGTGACCATAGGTGTATGGGTTTAATTCTGGGTCTTC  100

seq1  TTGGGAAGACCAGCAGTCTCAACCTGGACCCCTGGGATCTCTCAGACACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAGACCAGCAGTCTCAACCTGGACCCCTGGGATCTCTCAGACACT  150

seq1  AAGCCACCAACCAGGCTGTACACACTAGCTGATCTGAGTCCCCCAACATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACCAACCAGGCTGTACACACTAGCTGATCTGAGTCCCCCAACATG  200

seq1  AATACAGCAGAGGACTGCCAGGTCTGGCCTCAGTGAGAGTAGATGCACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGCAGAGGACTGCCAGGTCTGGCCTCAGTGAGAGTAGATGCACAT  250

seq1  AACCCTTGAGAGACTTGAAGCACCGGGGAGTGGGGAGGCCTGTCAGGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTGAGAGACTTGAAGCACCGGGGAGTGGGGAGGCCTGTCAGGGTG  300

seq1  GTGGGGTTGGAGGTGGGGACATCCTCTTGGAGAAAGGGGGAAGGAGGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGTTGGAGGTGGGGACATCCTCTTGGAGAAAGGGGGAAGGAGGAAT  350

seq1  GGGAT  355
      |||||
seq2  GGGAT  355

seq1: chr4_99826085_99826544
seq2: B6Ng01-065D14.g_67_522 (reverse)

seq1  AGGGAGGGAGAGAGAAAGAGAGGGAGAGGGAGGGAGAGAGGGAGGGAAAG  50
          |||||| ||| ||||||||||||| ||| ||||||| ||| || ||
seq2  ----AGGGAGGGAGCAAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAG  46

seq1  AGAGAGAGAGAAGGAGGGAGGGAGGGAGAGAGGGAGGGAGGGAGGGAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAAGGAGGGAGGGAGGGAGAGAGGGAGGGAGGGAGGGAGGG  96

seq1  AGAGGGAGAGAGAGGCTCTTTGGGAATTTGTATTTCTCCTGAACTTTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAGAGAGAGGCTCTTTGGGAATTTGTATTTCTCCTGAACTTTTGA  146

seq1  GTTGAGAAGGCTGTCCACACATACTTACTGACTCCATATTAACATCTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGAAGGCTGTCCACACATACTTACTGACTCCATATTAACATCTACA  196

seq1  CTTTCTGAACGAGTCTTGGTGTCAGAGGCCAGGTGACCTTCGGGACTCCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGAACGAGTCTTGGTGTCAGAGGCCAGGTGACCTTCGGGACTCCG  246

seq1  CCTCTCCTGTCCCGGCTGCTCATCCCATTTCTTCAAGCACTGCACACATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCTGTCCCGGCTGCTCATCCCATTTCTTCAAGCACTGCACACATT  296

seq1  GAGACTAAGACAGCTCTGTTTTAGCTGTGACCCAACGCTAGCAACCTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTAAGACAGCTCTGTTTTAGCTGTGACCCAACGCTAGCAACCTGTA  346

seq1  TACAGGGGTTGGGATGGTTTCTGGACTCTGTCTTCCATGTTCTGTAGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGGTTGGGATGGTTTCTGGACTCTGTCTTCCATGTTCTGTAGTTC  396

seq1  AATCTGCTGCTTTCTTCTTAGTACTAATGCTTGTTAGAAATGATGCGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGCTGCTTTCTTCTTAGTACTAATGCTTGTTAGAAATGATGCGAAC  446

seq1  GAATGAATTC  460
      ||||||||||
seq2  GAATGAATTC  456