BAC Information

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BAC

Clone NameB6Ng01-065O09
Chromosome4 (Build37)13 (Build37)
Map Location 79,734,691 - 79,735,23011,511,076 - 11,511,603
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040036, LOC667922
Downstream geneTyrp1, D4Bwg0951e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065O09.bB6Ng01-065O09.g
ACCDH885240DH885241
length1,095965
definitionDH885240|Mus musculus domesticus DNA, BAC clone: B6Ng01-065O09, 5' end.DH885241|Mus musculus domesticus DNA, BAC clone: B6Ng01-065O09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(79,734,691 - 79,735,230)(11,511,076 - 11,511,603)
sequence
gaattccaccatgactgatagcctctgggttctgtgcagtatgggagact
caggtcattagctgggcttctctttccttgaccttatcaggggaattcta
agttcccattcacacctccacctggggaatgccaggtcccctcagttaga
ttaaaggatcaattatctttcttctgataaaaccttttctgctagcatct
gagcttcctgaaatgcttccccatgctaatgtgacatttcaggtaccata
agccactagccaatgatcttagcccatcctcaatgaacctaccctcttct
cccaagactttatgaaccttgaataatgctaagtaaagttgatctttttc
ctgatagcaggtcccagtgtggtcattcactatatgaactcagggttaca
gaccccatgctccatccctgttcatactgctcttgtagagcatataggct
gacagtccacgagggcaagaaaacctacaatccattctttggatgaggaa
catctaggttgtttccagcttctggctattactaataaagctattatgaa
tgtagttgaacaagtgtccttgtagtatggtggaggatcttttgagtata
tgcaaaggagtagtatatgaggcagaatattcccaattttctgtgagacc
acaaaattgagttccaagtagttgaacaagtttgcactcccagcagcaaa
ggagacatcttcctcttactcaatatctttgccagaatgagttgagtttt
tgatcttagcctgtctgacaggtataaaatggaatatcacagttttgatt
ttcattttcctgatgattcaggatgttggacatttctttaagtgcttctc
agccattagagactactctgtagagaattgtttgttagatcaatacccta
ttttttaattgggtcaattggttggttgatgtctaatttcttgagtcttt
atatattttggattatcagtcttctactggatataggattggtgaagatt
ctgtaagctaacacactgggtcctttgccttaagaagcttttcagattca
ggatgtagttttctttttaaatcaaagtgcattggataattgttg
gaattcactggtcttaccatgttccccatcatcctgaagcagctggtctg
atagaaagatggaatggccttttgaagacgcagttacagcgccaattagg
tggtaacagcttggaaggctggggtagagttcttcagaaggcagtatatg
ctttgaatcagcgctcgatatatggtacagtttcacccatagccaggatt
catgggtccaggaatcaaggggtggaaaagggaatagttccacttactat
cactcctaatgaccctctaggaaaatttttgcttcctgtccccataactt
taggttctgctggcttagaagttttggctccagagaggggagtgctccta
ccaggagctacaacaaacattccattgaactggaagctcagacttccccc
tggtcattttgggcttctaatgcccttaaaccaacaggctaaaacaggaa
taacagtgttaggaggggtgatagatccagattaccatggggaaattgga
ttacctcttcacaatggtggtaagcaagattatgtctggagtgtaggaga
tcccttagggcgtctcttagtactaccatgtcctgtgattaaagtcaatg
ggaaactacaacagcctaatccaagcaggatgacaaaggacgcagaccca
tcaggaatgaaggtatggttcaatcctccaggaaaagagccaagacctgc
tgaggtgctggctgaaggagaaggaaatacagaatgggtagtagaggaag
gtagttataaataccaattaaggccacgtaaccagttgcagaaacgagga
ttataaagtaatatgaactcccattgtaattttactaatgtgtttgcgat
tgtacgagggatagttatatcatgttaggcgtatttacaaccttgttatt
gtttcatgttgaacatgagaaattatttgtgtcaagtgacaagggtggat
tgcagtggctattcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_79734691_79735230
seq2: B6Ng01-065O09.b_607_1143

seq1  AACAAGTGTCCTTGTAGTATGGTGGAGGATCTTTTGAGTATATGCAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTGTCCTTGTAGTATGGTGGAGGATCTTTTGAGTATATGCAAAGG  50

seq1  AGTAGTATATGAGGCAGAATATTCCCAATTTTCTGTGAGACCACAAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTATATGAGGCAGAATATTCCCAATTTTCTGTGAGACCACAAAATT  100

seq1  GAGTTCCAAGTAGTTGAACAAGTTTGCACTCCCAGCAGCAAAGGAGACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCAAGTAGTTGAACAAGTTTGCACTCCCAGCAGCAAAGGAGACAT  150

seq1  CTTCCTCTTACTCAATATCTTTGCCAGAATGAGTTGAGTTTTTGATCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTTACTCAATATCTTTGCCAGAATGAGTTGAGTTTTTGATCTTA  200

seq1  GCCTGTCTGACAGGTATAAAATGGAATATCACAGTTTTGATTTTCATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTCTGACAGGTATAAAATGGAATATCACAGTTTTGATTTTCATTTT  250

seq1  CCTGATGATTCAGGATGTTGGACATTTCTTTAAGTGCTTCTCAGCCATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGATTCAGGATGTTGGACATTTCTTTAAGTGCTTCTCAGCCATTA  300

seq1  GAGACTACTCTGTAGAGAATTGTTTGTTTAGATCAATACCCTATTTTTTA  350
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAGACTACTCTGTAGAGAATTGTTTG-TTAGATCAATACCCTATTTTTTA  349

seq1  ATTGGGTCAATTGGTTGGTTGATGTCTAATTTCTTGAGTTCTTTATATAT  400
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATTGGGTCAATTGGTTGGTTGATGTCTAATTTCTTGAG-TCTTTATATAT  398

seq1  TTTGGA-TATCAGTCTTCTACTGGATATAGGATTGGTGAAGATTCTGTAG  449
      |||||| |||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTGGATTATCAGTCTTCTACTGGATATAGGATTGGTGAAGATTCTGTAA  448

seq1  GCTA--TCACTTGGTCCTTTGCCTTATAGAAGCTTTTCAGTTTCAAGATT  497
      ||||   |||| |||||||||||||| ||||||||||||| |||| || |
seq2  GCTAACACACTGGGTCCTTTGCCTTA-AGAAGCTTTTCAGATTCAGGA-T  496

seq1  GATGTTTTCTTTTTAAATCAAAGTGCATTTGATTTAATTGTTG  540
      |  |||||||||||||||||||||||||| ||  |||||||||
seq2  GTAGTTTTCTTTTTAAATCAAAGTGCATTGGA--TAATTGTTG  537

seq1: chr13_11511076_11511603
seq2: B6Ng01-065O09.g_628_1022

seq1  GGGCATCTCTTAGTACTACCATGTCCTGTGATAAAAGTCACTGGGAAACT  50
      |||| ||||||||||||||||||||||||||| ||||||| |||||||||
seq2  GGGCGTCTCTTAGTACTACCATGTCCTGTGATTAAAGTCAATGGGAAACT  50

seq1  ACAACAGCCCAATCCAAGCAGGATGACAAAGGGCATAGATCCATCAGGAA  100
      ||||||||| |||||||||||||||||||||| |  ||| ||||||||||
seq2  ACAACAGCCTAATCCAAGCAGGATGACAAAGGACGCAGACCCATCAGGAA  100

seq1  TGAAGGTATGGGTCATTCCTCCAGGAAAAGAGCCAA-----GCTGAGGTG  145
      ||||||||||| ||| ||||||||||||||||||||     |||||||||
seq2  TGAAGGTATGGTTCAATCCTCCAGGAAAAGAGCCAAGACCTGCTGAGGTG  150

seq1  CTTACAGA--GTGGAAGAAATATTGACTAGGTAGGAGAGTTAGGTAGTTA  193
      ||  | ||  | | | ||||||  || | ||||| ||||  |||||||||
seq2  CTGGCTGAAGGAGAAGGAAATACAGAATGGGTAGTAGAGGAAGGTAGTTA  200

seq1  TAAATACCATCTAAGGACACGTGACCAGTTGCCGAAACAAGGATTATAAT  243
      |||||||||  ||||| ||||| ||||||||| ||||| |||||||||| 
seq2  TAAATACCAATTAAGGCCACGTAACCAGTTGCAGAAACGAGGATTATAA-  249

seq1  CGACATGAGTGCTTCTGTTTTATTTTGTTAGGAATGCATTTGTACAGATA  293
             |||                                        
seq2  -------AGT----------------------------------------  252

seq1  TTTGTGTTTTCTTTCAATTTCTTTAGCATCAATTAAGAGCATATCAATGG  343
                                              |||| ||   
seq2  ---------------------------------------AATATGAA---  260

seq1  TTATCACATTTAAGTTTTAGATTCTAAAAGGATGTTTCCCAAGGAACATT  393
         || ||||  | |||||                               
seq2  --CTCCCATTGTAATTTTA-------------------------------  277

seq1  TGCCTACTCTAAATTTACGATGTGCTTATGGTTGTATAAGTGATAGATAT  443
              |||        ||||| ||  | |||||  || ||||| |||
seq2  --------CTA--------ATGTGTTTGCGATTGTACGAGGGATAGTTAT  311

seq1  ATTATGTTGGGTATATTTATGACCTGGCTATTGTTTTCACTTGAGCATGA  493
      || ||||| ||  ||||||  |||| | ||||||||    |||| |||||
seq2  ATCATGTTAGGCGTATTTACAACCTTGTTATTGTTTCATGTTGAACATGA  361

seq1  GGTATGATTTGTGTCAAGTGACAAGGGGTGGATTG  528
      |  || |||||||||||||||||| ||||||||||
seq2  GAAATTATTTGTGTCAAGTGACAA-GGGTGGATTG  395