BAC Information

Click to search

BAC

Clone NameB6Ng01-066B08
Chromosome4 (Build37)
Map Location 108,154,392 - 108,289,157
singlet/doubletdoublet
Overlap geneZcchc11, LOC100040110, Prpf38a, Orc1l
Upstream geneGlis1, Dmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2, Echdc2, Zyg11a, Zyg11b, LOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728
Downstream geneCc2d1b, Zfyve9, LOC100040326, 3110021N24Rik, Btf3l4, Txndc12, Kti12, Rab3b, Nrd1, Osbpl9, Calr4, Eps15, LOC666144, 4922503N01Rik, Rnf11, 4930522H14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066B08.bB6Ng01-066B08.g
ACCDH885364DH885365
length1,144273
definitionDH885364|Mus musculus domesticus DNA, BAC clone: B6Ng01-066B08, 5' end.DH885365|Mus musculus domesticus DNA, BAC clone: B6Ng01-066B08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,288,000 - 108,289,157)(108,154,392 - 108,154,670)
sequence
gaattcaattcaggttctttgcaaaagccacctcctcagcctgtgcttcc
ttttggcaattagaacatcatttgtgtgtctgtctgtgtgtgcagtggcc
atggaggaggtggtgttaatcccgtggggctggagttgtgagctgcctga
cttcagttctagaaactgaattcagatcgtccgcaagagcctccacttga
gcctttgagccatttcaaccgcctcattttgtttatcattcacttttctt
ctataaaggacttcttcactcttccttttggttcattgtggacgttataa
caatattctgatacaggggtggagaggtggctcagcagttaagagcactt
gcttttttgtagttctagtcaccagcacacacgtggctgctcacacccat
ttgtaactagctgtaggggatcagatggcctctcctggtctgaggagtac
acataggtggtacatcctcacagatgcacacagaacattatacatacaaa
ataatccttaaaaatgtcctgatagggactctcaactcagttttattaga
atgtgtatgtaataaaagggatagactagggcttctagcttgccaggtca
atttccgtacacagaactctatctatcccgcatccccagccctcttgagc
cagggtctcacatagatgctcaggctgaccttgagctcacgatgttacag
tctcggccttatgtttataatcctgtcttagccttttgagtagctgggat
tacaggtcattgccatcaagtctggctacaaattttataaactatttgaa
gactaatagcagacattatcacagctcactcatttaatgaagttcccaag
cagcagtctatgtatcaggacatagtaatgtgttgaatgcacaaggttca
taaaccttatatttatttagtggaatgaacccagaacctctctcatttgt
cacaagccctcttccactgagttatcttttttaatttgttcagttggtca
agaatggcatatgccttcaatccccacttgagaggcagcaacagttggag
ctcttgagctagcctggtctaatatgctagtcagagcatccagggactag
acccatcttaagtttcatttaagacggtcttcctatctgtccag
tttgtttagctctgagccccattttttaatggggttatttgattttcttg
agttctttatatatattggatattagtcccctatctaatttaggataggt
aaagatcctttcccaatctgttggtggcttttttgtcttactgacggtgt
cttttgtcttacagaagctttgcagtttcatgaggtcccatttgtctaaa
aaagtaatcttagtaatatattcttatttattcatcaaatacacgcacat
atgtatgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_108288000_108289157
seq2: B6Ng01-066B08.b_45_1188 (reverse)

seq1  CTGGGCAGATTAGGAAGACCCTGTCTTAAATGAAAACTTTTAAGATGGGG  50
      |||| |||| ||||||||||  |||||||||||||    ||||||| |||
seq2  CTGGACAGA-TAGGAAGACC--GTCTTAAATGAAA---CTTAAGAT-GGG  43

seq1  TCTTAAGTTCCCTGGATGCTCTGGAACTAGC-TATGTAGACCAGGCTAGC  99
      |||  || |||||||||||||||  |||||| ||| ||||||||||||||
seq2  TCT--AG-TCCCTGGATGCTCTG--ACTAGCATAT-TAGACCAGGCTAGC  87

seq1  TTCAGAGCTCCACCTGTTGCTGCCTCTCAAGTGGGGATTGAAGGCATATG  149
      |  ||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGCTCCAACTGTTGCTGCCTCTCAAGTGGGGATTGAAGGCATATG  137

seq1  CCATTCCTTGACCAAACTGAAACAAATTTAAAAAGATAACTCAGTGGAAG  199
      ||||| ||||||| ||||| |||||||| |||||||||||||||||||||
seq2  CCATT-CTTGACC-AACTG-AACAAATTAAAAAAGATAACTCAGTGGAAG  184

seq1  AGGGCTTGTTGACAAATGAGAGAGGTTCTGGGTTCATTCCACTAAATAAA  249
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTG-TGACAAATGAGAGAGGTTCTGGGTTCATTCCACTAAATAAA  233

seq1  TATAAGG-TTATGAACCTTGTGCATTCAACACATTACTATGTCCTGATAC  298
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGGTTTATGAACCTTGTGCATTCAACACATTACTATGTCCTGATAC  283

seq1  ATAGACTGCTGCTTGGGAACTTCATTAAATGAGTGAGCTGTGATAATGTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTGCTGCTTGGGAACTTCATTAAATGAGTGAGCTGTGATAATGTC  333

seq1  TGCTATTAGTCTTCAAATAGTTTAT-AAATTTGTAGCCAGACTTGATGGC  397
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGCTATTAGTCTTCAAATAGTTTATAAAATTTGTAGCCAGACTTGATGGC  383

seq1  AATGACCTGTAATCCCAGCTACTCAAAAGGCTAAGACAGGATTATAAACA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCTGTAATCCCAGCTACTCAAAAGGCTAAGACAGGATTATAAACA  433

seq1  TAAGGCCGAGACTGTAACATCGTGAGCTCAAGGTCAGCCTGAGCATCTAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCCGAGACTGTAACATCGTGAGCTCAAGGTCAGCCTGAGCATCTAT  483

seq1  GTGAGACCCTGGCTCAAGAGGGCTGGGGATGCGGGATAGATAGAGTTCTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGACCCTGGCTCAAGAGGGCTGGGGATGCGGGATAGATAGAGTTCTG  533

seq1  TGTACGGAAATTGACCTGGCAAGCTAGAAGCCCTAGTCTATCCCTTTTAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACGGAAATTGACCTGGCAAGCTAGAAGCCCTAGTCTATCCCTTTTAT  583

seq1  TACATACACATTCTAATAAAACTGAGTTGAGAGTCCCTATCAGGACATTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACACATTCTAATAAAACTGAGTTGAGAGTCCCTATCAGGACATTT  633

seq1  TTAAGGATTATTTTGTATGTATAATGTTCTGTGTGCATCTGTGAGGATGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGATTATTTTGTATGTATAATGTTCTGTGTGCATCTGTGAGGATGT  683

seq1  ACCACCTATGTGTACTCCTCAGACCAGGAGAGGCCATCTGATCCCCTACA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTATGTGTACTCCTCAGACCAGGAGAGGCCATCTGATCCCCTACA  733

seq1  GCTAGTTACAAATGGGTGTGAGCAGCCACGTGTGTGCTGGTGACTAGAAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTTACAAATGGGTGTGAGCAGCCACGTGTGTGCTGGTGACTAGAAC  783

seq1  TACAAAAAAGCAAGTGCTCTTAACTGCTGAGCCACCTCTCCACCCCTGTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAAAGCAAGTGCTCTTAACTGCTGAGCCACCTCTCCACCCCTGTA  833

seq1  TCAGAATATTGTTATAACGTCCACAATGAACCAAAAGGAAGAGTGAAGAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATATTGTTATAACGTCCACAATGAACCAAAAGGAAGAGTGAAGAA  883

seq1  GTCCTTTATAGAAGAAAAGTGAATGATAAACAAAATGAGGCGGTTGAAAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTATAGAAGAAAAGTGAATGATAAACAAAATGAGGCGGTTGAAAT  933

seq1  GGCTCAAAGGCTCAAGTGGAGGCTCTTGCGGACGATCTGAATTCAGTTTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAAAGGCTCAAGTGGAGGCTCTTGCGGACGATCTGAATTCAGTTTC  983

seq1  TAGAACTGAAGTCAGGCAGCTCACAACTCCAGCCCCACGGGATTAACACC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTGAAGTCAGGCAGCTCACAACTCCAGCCCCACGGGATTAACACC  1033

seq1  ACCTCCTCCATGGCCACTGCACACACAGACAGACACACAAATGATGTTCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTCCATGGCCACTGCACACACAGACAGACACACAAATGATGTTCT  1083

seq1  AATTGCCAAAAGGAAGCACAGGCTGAGGAGGTGGCTTTTGCAAAGAACCT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCCAAAAGGAAGCACAGGCTGAGGAGGTGGCTTTTGCAAAGAACCT  1133

seq1  GAATTGAATTC  1158
      |||||||||||
seq2  GAATTGAATTC  1144

seq1: chr4_108154392_108154670
seq2: B6Ng01-066B08.g_71_349

seq1  GAATTCTTTGTTTAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50

seq1  TTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCTAATTTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCTAATTTAGG  100

seq1  ATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCTTTTTTGTCTTACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCTTTTTTGTCTTACTGA  150

seq1  CGGTGTCTTTTGTCTTACAGAAGCTTTGCAGTTTCATGAGGTCCCATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGTCTTTTGTCTTACAGAAGCTTTGCAGTTTCATGAGGTCCCATTTG  200

seq1  TCTAAAAAAGTAATCTTAGTAATATATTCTTATTTATTCATCAAATACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAAAGTAATCTTAGTAATATATTCTTATTTATTCATCAAATACAC  250

seq1  GCACATATGTATGTGTGTGTGTGTGTGTG  279
      |||||||||||||||||||||||||||||
seq2  GCACATATGTATGTGTGTGTGTGTGTGTG  279