BAC Information

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BAC

Clone NameB6Ng01-066C23
Chromosome4 (Build37)
Map Location 108,595,477 - 108,746,583
singlet/doubletdoublet
Overlap geneRab3b, Nrd1, Osbpl9
Upstream geneCpt2, Slc1a7, Podn, Scp2, Echdc2, Zyg11a, Zyg11b, LOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728, Zcchc11, LOC100040110, Prpf38a, Orc1l, Cc2d1b, Zfyve9, LOC100040326, 3110021N24Rik, Btf3l4, Txndc12, Kti12
Downstream geneCalr4, Eps15, LOC666144, 4922503N01Rik, Rnf11, 4930522H14Rik, Cdkn2c, LOC100040307, Faf1, Dmrta2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066C23.bB6Ng01-066C23.g
ACCDH885431DH885432
length1,178351
definitionDH885431|Mus musculus domesticus DNA, BAC clone: B6Ng01-066C23, 5' end.DH885432|Mus musculus domesticus DNA, BAC clone: B6Ng01-066C23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,745,386 - 108,746,583)(108,595,477 - 108,595,827)
sequence
gaattctcaatgtacactcaactgacctaaactcacagagaatggcttgc
ctctgcctcccaagtgtagggattaaaggtctgtgccagcatgcccagtt
ggttatttaatttatatatgaaattttaggtagatactgataatttttag
agaaggctctttttagaccttcttaaacctgctaataaagtcatcttctt
accataacctgctgagacagttttatgccagtaaattgccataaatatat
ttgtaaaaaatatgctttaaaatgttatttcaaatttatgttgagaaaaa
gtattaatcctctgtggactttgctcaaggatcttagaaaataaagacag
gaacccaagacttacaatggattatgttgttgttttgatttttgcagagt
cacactcttgtagttcaggctggcctcaaactcaaaacaattctcctgcc
tcagcatcacaaaagatgaaggtcataggtgtgacccatagctccaagct
tgaacggtttctctttttgaggaaattgccagtcactagatcacctccat
gtgcacagagaagtgaggaagtgaactcaagtttcagatttggatgcaga
gatctccctgcctccatcactgccttcagctaggctcgtcctgtgcacag
agcgcaggctcagtgtggaatgtgcaggtagctgctcgtaggagcctggc
tgtttctgccatctctctgtgtactgatttcaattaactgtgcatcaaca
tctgccttccacgttgctctctttcactaaaaaaaactgacctctttcac
tatttattcttttttttattattattcagttcttctggatctgcctcagt
cttgacacacagcagctccggaaatagcttaaaacgcccagataccacag
agtctctgaattcctccatgtccaatggcacaagcgatgctggtgaggag
cctctgagaacttggttttcttagaaatttggcagtcctggcaggcacct
ccactcaacccaaggcagcctaagctgagccgtttgttgcgaatcttttt
gactcacatgacgacagaaagatgatgggagctgggtcagtggaggagac
aaagagcgttacatgcaccccttatacagtcagctggatgacctcccaag
gtgagagcgagtgcattccctcccatgc
attaatgtgtgagcacgagtatgctctcttctctctcactcacgcttggc
acatgtgtggaggtcagggatcaacttgcatgcgtcctttcttcctacca
tgtgggtccagataactgagctcaggtcatcagcatcagtgatgggtggc
cctagctactgagccatgtcatcagccctgctgctgcacttctgatctca
catgagctgagattaactgaggaagatttgtgaacgattgggtctgtcaa
catcttctcaaacgaggaagaagagcccttaagctttccctgaccaggac
ctatggagagatcattctctctctctctctctctctctctctctctctct
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_108745386_108746583
seq2: B6Ng01-066C23.b_47_1224 (reverse)

seq1  GCATGAGCGGAGGGAATGCACACTGGCTCTTACCTTTGTGAGGTCCATCC  50
      |||||   ||||||||||  |||| ||||| ||| ||| ||||| |||  
seq2  GCATG---GGAGGGAATG--CACTCGCTCTCACC-TTGGGAGGT-CAT--  41

seq1  CCAGCCTGACTTGTGATAAGAGGTGCATGATAACGCTCTTGTGCTCCTCC  100
      |||| ||||| ||| ||||| |||||||| ||||||||||   |||||||
seq2  CCAG-CTGAC-TGT-ATAAGGGGTGCATG-TAACGCTCTTTGTCTCCTCC  87

seq1  ACTGACCCAGCCTCCCCATCATCATCTCTGTCGTCATGTGAGTCAAAAAG  150
      |||||||||||   ||||||||| | ||||||||||||||||||||||||
seq2  ACTGACCCAGC--TCCCATCATC-TTTCTGTCGTCATGTGAGTCAAAAAG  134

seq1  ATCTGCAACAGAACGGCTCAGCTTAGGCTGGCTTTGGGTTGAGTGGAGGT  200
      ||  |||||| |||||||||||||||||| || |||||||||||||||||
seq2  ATTCGCAACA-AACGGCTCAGCTTAGGCT-GCCTTGGGTTGAGTGGAGGT  182

seq1  GCCCTGCCAGGACTGCCAAAATTTCTAAGAAAACCAAGTTCTCAGAGGCT  250
      | ||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  G-CCTGCCAGGACTGCC-AAATTTCTAAGAAAACCAAGTTCTCAGAGGCT  230

seq1  CCTCACCAGCATCGCTTGTGCCATTGGACATGGAGGAATTCAGAGACTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACCAGCATCGCTTGTGCCATTGGACATGGAGGAATTCAGAGACTCT  280

seq1  GTGGTATCTGGGCGTTTTAAGCTATTTCCGGAGCTGCTGTGTGTCAAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTATCTGGGCGTTTTAAGCTATTTCCGGAGCTGCTGTGTGTCAAGAC  330

seq1  TGAGGCAGATCCAGAAGAACTGAATAATAATAAAAAAAAGAATAAATAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCAGATCCAGAAGAACTGAATAATAATAAAAAAAAGAATAAATAGT  380

seq1  GAAAGAGGTCAGTTTTTTTTAGTGAAAGAGAGCAACGTGGAAGGCAGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGGTCAGTTTTTTTTAGTGAAAGAGAGCAACGTGGAAGGCAGATG  430

seq1  TTGATGCACAGTTAATTGAAATCAGTACACAGAGAGATGGCAGAAACAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGCACAGTTAATTGAAATCAGTACACAGAGAGATGGCAGAAACAGC  480

seq1  CAGGCTCCTACGAGCAGCTACCTGCACATTCCACACTGAGCCTGCGCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCCTACGAGCAGCTACCTGCACATTCCACACTGAGCCTGCGCTCT  530

seq1  GTGCACAGGACGAGCCTAGCTGAAGGCAGTGATGGAGGCAGGGAGATCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACAGGACGAGCCTAGCTGAAGGCAGTGATGGAGGCAGGGAGATCTC  580

seq1  TGCATCCAAATCTGAAACTTGAGTTCACTTCCTCACTTCTCTGTGCACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCAAATCTGAAACTTGAGTTCACTTCCTCACTTCTCTGTGCACAT  630

seq1  GGAGGTGATCTAGTGACTGGCAATTTCCTCAAAAAGAGAAACCGTTCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGATCTAGTGACTGGCAATTTCCTCAAAAAGAGAAACCGTTCAAG  680

seq1  CTTGGAGCTATGGGTCACACCTATGACCTTCATCTTTTGTGATGCTGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGCTATGGGTCACACCTATGACCTTCATCTTTTGTGATGCTGAGG  730

seq1  CAGGAGAATTGTTTTGAGTTTGAGGCCAGCCTGAACTACAAGAGTGTGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAATTGTTTTGAGTTTGAGGCCAGCCTGAACTACAAGAGTGTGAC  780

seq1  TCTGCAAAAATCAAAACAACAACATAATCCATTGTAAGTCTTGGGTTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAAAAATCAAAACAACAACATAATCCATTGTAAGTCTTGGGTTCCT  830

seq1  GTCTTTATTTTCTAAGATCCTTGAGCAAAGTCCACAGAGGATTAATACTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTATTTTCTAAGATCCTTGAGCAAAGTCCACAGAGGATTAATACTT  880

seq1  TTTCTCAACATAAATTTGAAATAACATTTTAAAGCATATTTTTTACAAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAACATAAATTTGAAATAACATTTTAAAGCATATTTTTTACAAAT  930

seq1  ATATTTATGGCAATTTACTGGCATAAAACTGTCTCAGCAGGTTATGGTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATGGCAATTTACTGGCATAAAACTGTCTCAGCAGGTTATGGTAA  980

seq1  GAAGATGACTTTATTAGCAGGTTTAAGAAGGTCTAAAAAGAGCCTTCTCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGACTTTATTAGCAGGTTTAAGAAGGTCTAAAAAGAGCCTTCTCT  1030

seq1  AAAAATTATCAGTATCTACCTAAAATTTCATATATAAATTAAATAACCAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTATCAGTATCTACCTAAAATTTCATATATAAATTAAATAACCAA  1080

seq1  CTGGGCATGCTGGCACAGACCTTTAATCCCTACACTTGGGAGGCAGAGGC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCATGCTGGCACAGACCTTTAATCCCTACACTTGGGAGGCAGAGGC  1130

seq1  AAGCCATTCTCTGTGAGTTTAGGTCAGTTGAGTGTACATTGAGAATTC  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATTCTCTGTGAGTTTAGGTCAGTTGAGTGTACATTGAGAATTC  1178

seq1: chr4_108595477_108595827
seq2: B6Ng01-066C23.g_76_426

seq1  ATTAATGTGTGAGCACGAGTATGCTCTCTTCTCTCTCACTCACGCTTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGTGTGAGCACGAGTATGCTCTCTTCTCTCTCACTCACGCTTGGC  50

seq1  ACATGTGTGGAGGTCAGGGATCAACTTGCATGCGTCCTTTCTTCCTACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGTGGAGGTCAGGGATCAACTTGCATGCGTCCTTTCTTCCTACCA  100

seq1  TGTGGGTCCAGATAACTGAGCTCAGGTCATCAGCATCAGTGATGGGTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTCCAGATAACTGAGCTCAGGTCATCAGCATCAGTGATGGGTGGC  150

seq1  CCTAGCTACTGAGCCATGTCATCAGCCCTGCTGCTGCACTTCTGATCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCTACTGAGCCATGTCATCAGCCCTGCTGCTGCACTTCTGATCTCA  200

seq1  CATGAGCTGAGATTAACTGAGGAAGATTTGTGAACGATTGGGTCTGTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGCTGAGATTAACTGAGGAAGATTTGTGAACGATTGGGTCTGTCAA  250

seq1  CATCTTCTCAAACGAGGAAGAAGAGCCCTTAAGCTTTCCCTGACCAGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCTCAAACGAGGAAGAAGAGCCCTTAAGCTTTCCCTGACCAGGAC  300

seq1  CTATGGAGAGATCATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGAGAGATCATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  350

seq1  C  351
      |
seq2  C  351