BAC Information

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BAC

Clone NameB6Ng01-066I16
Chromosome4 (Build37)19 (Build37)
Map Location 93,839,739 - 93,840,92731,269,087 - 31,269,119
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC384125, Tusc1
Downstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066I16.bB6Ng01-066I16.g
ACCDH885692DH885693
length1,172599
definitionDH885692|Mus musculus domesticus DNA, BAC clone: B6Ng01-066I16, 5' end.DH885693|Mus musculus domesticus DNA, BAC clone: B6Ng01-066I16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(93,839,739 - 93,840,927)(31,269,087 - 31,269,119)
sequence
gaattcttttgaattcttccactcactcatatttgtgtttctggtcccca
cacttgagcctctgagttcctgaggaaacctgctgcctccaaggaaggtt
atctgtatctcagactccacctcacctctagcacatggacagtgtcagat
gatttccaggttctctctccatcattctatcctgtgtttgggctgggatt
gggtcttagtgtatagagcccagaaacagactcactctgtatagagagga
gtagaaatcacagctcagtaacctctgacatgtcacatatcctaaaggat
ttttctattgaaaatgtttttcatatacaatatattttgattacagtttc
cctttcctctacatcttcccattcccccctttcttccctcccatccagat
ctactcccattctgtttctccttagaaaacaaacagacatctaagggata
ataataaaattaaataaaaatacaaaacaaatctaagcaactcagaatag
gactaaacaaacaaacaaacaaacaaacaaacaaacggataaggcacaag
aaacatacagatgcaaagaaacactcattcgcatcatcaatatcctcagg
tttgaacagacatgttgaaaaacaaatcatagaaatggatctattgaaat
ttggtgctaggctgggtagtggtggtacatgcctttaattccaggacttg
ggagggagaggcaggtggatttctgtaagttcaaggccaacctggcctac
agagcaagtttcaagacagtcaaggctacacagagaaaccctgtctggaa
aaaacaaaccaaacaaaagttgatgctgtatatgtttgctccatttggtt
tctgcattatatgagtccctagctctgcccctggctagtttatgagattc
ggaaaagtgttgagttaaagcatttaatttactatgactcgttacttagt
catgtatggatgcttatttcccactagctgtgggtctatgcagctgtagc
ttgatgaagttgctcttccacttctgctcaagtgtgtcaggagagcactg
tcaaatctttctgaaatctgattccccattctctcctattccctgctctc
tccaggtgtcacttctgtcagtagaaaaaaagtcatctgacagctcttct
tagggattatgctggctgctga
gaattcttcgtttatttctgtaccccattttttgattgggttgtttgttt
gtttgtttttgttttgttttttggtgattaacttcttgagttctttatat
attttggatattagccctctatcagatgtggggtcatggaagatattttt
ttcccaatcagtaggttgccaatttgtcttatcgactgtgtcctttatct
tacagaagctttccttatttgtgatagccagaagctggaaacaacctaga
tgtacaacgatgtatttacacaaaagaatactacgcagctattaagagta
agtatatcctgacttttgcaggctaatggatagaactagaaaatatcatc
ctgagtgaggtaactcagacccaaaaagacatgcatggtatgcactcact
aataagtagatattagccaataaaataaaataaaattaaattaaattaaa
ttaaattaaattaaattaaagaaaaaggaaaaaaacatacagaatacaca
agatatagtccacagaattcaaaaggctcaacaagctgaagtgcccaagg
aagtatgcctcagtcccacttgggagagagaagaaagcaatcacaagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_93839739_93840927
seq2: B6Ng01-066I16.b_47_1218 (reverse)

seq1  TCAGCCAGCCAGCATGAGTTCACTAAGAAGAGCCTTGTCAGATGAACCTC  50
      |||| |||||||||| |  || |||||||||||  ||||||||||  || 
seq2  TCAG-CAGCCAGCATAA--TCCCTAAGAAGAGC--TGTCAGATGA--CTT  43

seq1  ATTTTCTACTGACAG-AGTGACCACCCTGGGAGAGCAGAGGAATAGGAGA  99
       |||||||||||||| ||||| ||||  | |||||||| |||||||||||
seq2  TTTTTCTACTGACAGAAGTGA-CACCTGGAGAGAGCAG-GGAATAGGAGA  91

seq1  GAAATGGGGAATCCAGATTTCAAGAAAGATTTGACAAGTGCTCTCCTGAC  149
      | |||||||||| |||||||| ||||||||||||| ||||||||||||||
seq2  G-AATGGGGAAT-CAGATTTC-AGAAAGATTTGAC-AGTGCTCTCCTGAC  137

seq1  ACACTTGAAGGCAAGAAAGTGGAAGAGCACCTTCATCAAGCTACAGCTGC  199
      ||||||||  |||   ||||||||||||| ||||||||||||||||||||
seq2  ACACTTGA--GCA--GAAGTGGAAGAGCAACTTCATCAAGCTACAGCTGC  183

seq1  ATAGACCCACAGCTAGTGGGAAATAAGCATCCATACATGACTAAGTAACG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACCCACAGCTAGTGGGAAATAAGCATCCATACATGACTAAGTAACG  233

seq1  AGTCATAGTAAATTAAATGCTTTAACTCAACACTTTTTCCGAATCTCATA  299
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGTCATAGTAAATTAAATGCTTTAACTCAACAC-TTTTCCGAATCTCATA  282

seq1  AACTAGCCAGGGGCAGAGCTAGGGACTCATATAATGCAGAAACCAAATGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGCCAGGGGCAGAGCTAGGGACTCATATAATGCAGAAACCAAATGG  332

seq1  AGCAAACATATACAGCATCAACTTTTGTTTGGTTTGTTTTTTCCAGACAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACATATACAGCATCAACTTTTGTTTGGTTTGTTTTTTCCAGACAG  382

seq1  GGTTTCTCTGTGTAGCCTTGACTGTCTTGAAACTTGCTCTGTAGGCCAGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTCTGTGTAGCCTTGACTGTCTTGAAACTTGCTCTGTAGGCCAGG  432

seq1  TTGGCCTTGAACTTACAGAAATCCACCTGCCTCTCCCTCCCAAGTCCTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTTGAACTTACAGAAATCCACCTGCCTCTCCCTCCCAAGTCCTGG  482

seq1  AATTAAAGGCATGTACCACCACTACCCAGCCTAGCACCAAATTTCAATAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAGGCATGTACCACCACTACCCAGCCTAGCACCAAATTTCAATAG  532

seq1  ATCCATTTCTATGATTTGTTTTTCAACATGTCTGTTCAAACCTGAGGATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTTCTATGATTTGTTTTTCAACATGTCTGTTCAAACCTGAGGATA  582

seq1  TTGATGATGCGAATGAGTGTTTCTTTGCATCTGTATGTTTCTTGTGCCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGATGCGAATGAGTGTTTCTTTGCATCTGTATGTTTCTTGTGCCTT  632

seq1  ATCCGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTAGTCCTATTCTGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTAGTCCTATTCTGAG  682

seq1  TTGCTTAGATTTGTTTTGTATTTTTATTTAATTTTATTATTATCCCTTAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTAGATTTGTTTTGTATTTTTATTTAATTTTATTATTATCCCTTAG  732

seq1  ATGTCTGTTTGTTTTCTAAGGAGAAACAGAATGGGAGTAGATCTGGATGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGTTTGTTTTCTAAGGAGAAACAGAATGGGAGTAGATCTGGATGG  782

seq1  GAGGGAAGAAAGGGGGGAATGGGAAGATGTAGAGGAAAGGGAAACTGTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAGAAAGGGGGGAATGGGAAGATGTAGAGGAAAGGGAAACTGTAA  832

seq1  TCAAAATATATTGTATATGAAAAACATTTTCAATAGAAAAATCCTTTAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATATATTGTATATGAAAAACATTTTCAATAGAAAAATCCTTTAGG  882

seq1  ATATGTGACATGTCAGAGGTTACTGAGCTGTGATTTCTACTCCTCTCTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGACATGTCAGAGGTTACTGAGCTGTGATTTCTACTCCTCTCTAT  932

seq1  ACAGAGTGAGTCTGTTTCTGGGCTCTATACACTAAGACCCAATCCCAGCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTGAGTCTGTTTCTGGGCTCTATACACTAAGACCCAATCCCAGCC  982

seq1  CAAACACAGGATAGAATGATGGAGAGAGAACCTGGAAATCATCTGACACT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACAGGATAGAATGATGGAGAGAGAACCTGGAAATCATCTGACACT  1032

seq1  GTCCATGTGCTAGAGGTGAGGTGGAGTCTGAGATACAGATAACCTTCCTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGTGCTAGAGGTGAGGTGGAGTCTGAGATACAGATAACCTTCCTT  1082

seq1  GGAGGCAGCAGGTTTCCTCAGGAACTCAGAGGCTCAAGTGTGGGGACCAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGCAGGTTTCCTCAGGAACTCAGAGGCTCAAGTGTGGGGACCAG  1132

seq1  AAACACAAATATGAGTGAGTGGAAGAATTCAAAAGAATTC  1189
      ||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAAATATGAGTGAGTGGAAGAATTCAAAAGAATTC  1172

seq1: chr19_31269087_31269119
seq2: B6Ng01-066I16.g_633_665 (reverse)

seq1  CACTTGTGATTGCTTTCTTCTCCCTCCCAAGTG  33
      |||||||||||||||||||||| ||||||||||
seq2  CACTTGTGATTGCTTTCTTCTCTCTCCCAAGTG  33