BAC Information

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BAC

Clone NameB6Ng01-067D01
Chromosome4 (Build37)
Map Location 145,346,309 - 145,489,626
singlet/doubletdoublet
Overlap gene1700029I01Rik, LOC236069, LOC384084
Upstream geneGm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704
Downstream geneLOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067D01.bB6Ng01-067D01.g
ACCDH886156DH886157
length942939
definitionDH886156|Mus musculus domesticus DNA, BAC clone: B6Ng01-067D01, 5' end.DH886157|Mus musculus domesticus DNA, BAC clone: B6Ng01-067D01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,346,309 - 145,347,076)(145,488,687 - 145,489,626)
sequence
gaattcttagaccttcagtatatagacatacacatagagccattgttggg
ctagatggactatagcctgtcagtccttctaataaatcatgtgtgtgtgt
gtgtcagagagagtcattctataaattgttactctaggaaatgcagaata
atataacaatattccttcgtaaatgctccccacacatacacacacttttt
ttttcttttctcctgaaaaatcgcctggagatgctaggaaggaaacttgt
ttagaatcagtttcatgtgctgttaggagcgggtgtggcggcagtcccaa
aggcgccagggactgcagctaagtcatatgacttgcacctgacttcctca
tataagagacaaacatcttgagtgctgcgcaggtgtaccaggatacaggt
gaatccaatttggtggagatttgcccctgctgccctgattagctgaagct
gcgtgcctggtgaggtggcgtgacctgctgtgcgtggatgggaactgaga
gtataaaagagtgagaggcccgggttagagggaggattattattcgagag
aggattattattcgagagaggattgttattattgggagatataaaaacaa
gggagatataaacaagggagagatataaacaagggagatataaacaagaa
gaaacaggactgaataaacgtgtgcagaaggatcctgctgtggcgtcgtt
cttgctggcgagttgagcgcgcgcaacaagtggtgccgaaacccgggaaa
agaaacatcttcaggcaagagcgaagaccccctgctacagggaggattca
gaactgcatcacggggaagaaggggttaataaaggttctcgtaaacagac
tgttgagaaggatccggcgtggattcagaactcttcagctgggaacggta
ctggtaagtctcccaaattgatccttggttaaggggatattt
gaattctctgatgaatactaagacaggattgttgggtaaagcatttgtca
cattcactgcatttgtaaggtttctctcctgtatgaattctctgatgaat
actaagattggattgtttggtaaagcatttgtcacattcactgcatttgt
aaggtttctctcctgtatgaattctctgatgcatagtaagattgaatttg
tttttaaaacatttgtcacattcactacatttgtaaattttctcttctgt
atgaatttcctgatgaatactaagatggatctgatgggtaaagcatttgt
cacttttactactttcgtaaggtttctttccatgataaattctctgctga
ctttgtagtttttctctctgggtaagatatttgtgaaattcactacattt
gtaagggttccctgcaatattgtcttttttcaccatgactttatgtttag
aaacaaaaaccttctctaattctgcatttcggttgtgttttttcttctgc
atgttaattccttgattgagactaatggtagaaaacaaacttaaactgtt
tacagagtcattgtatttgcaaacttctttagtgttcctgggcttaagtc
ttttttggttcgagaattgaagagcatcagagctgtgattagttttgtaa
ggtgtacactggagggattcaagaatgacattgctaagcttgtcccattt
agaagacttctcttgaatattcatgtgttcatggacaatgtactggctgt
cttgatccaataccttcccattctttccacgtatgcaatgattttctgaa
aaaaagggggggggggcaattagaggtgacatgaattacttatataagga
gtaagggactcaataatcagtgagcttatggattcgtactctcagaaagg
ttctctctctctctctctctctctctctctctctcactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145346309_145347076
seq2: B6Ng01-067D01.b_47_814

seq1  GAATTCTTAGACCTTCAGTATATAGACATACACATAGAGCCATTGTTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGACCTTCAGTATATAGACATACACATAGAGCCATTGTTGGG  50

seq1  CTAGATGGACTATAGCCTGTCAGTCCTTCTAATAAATCATGTGTGTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATGGACTATAGCCTGTCAGTCCTTCTAATAAATCATGTGTGTGTGT  100

seq1  GTGTCAGAGAGAGTCATTCTATAAATTGTTACTCTAGGAAATGCAGAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAGAGAGAGTCATTCTATAAATTGTTACTCTAGGAAATGCAGAATA  150

seq1  ATATAACAATATTCCTTCGTAAATGCTCCCCACACATACACACACTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACAATATTCCTTCGTAAATGCTCCCCACACATACACACACTTTTT  200

seq1  TTTTCTTTTCTCCTGAAAAATCGCCTGGAGATGCTAGGAAGGAAACTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTCTCCTGAAAAATCGCCTGGAGATGCTAGGAAGGAAACTTGT  250

seq1  TTAGAATCAGTTTCATGTGCTGTTAGGAGCGGGTGTGGCGGCAGTCCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATCAGTTTCATGTGCTGTTAGGAGCGGGTGTGGCGGCAGTCCCAA  300

seq1  AGGCGCCAGGGACTGCAGCTAAGTCATATGACTTGCACCTGACTTCCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGCCAGGGACTGCAGCTAAGTCATATGACTTGCACCTGACTTCCTCA  350

seq1  TATAAGAGACAAACATCTTGAGTGCTGCGCAGGTGTACCAGGATACAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGAGACAAACATCTTGAGTGCTGCGCAGGTGTACCAGGATACAGGT  400

seq1  GAATCCAATTTGGTGGAGATTTGCCCCTGCTGCCCTGATTAGCTGAAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCAATTTGGTGGAGATTTGCCCCTGCTGCCCTGATTAGCTGAAGCT  450

seq1  GCGTGCCTGGTGAGGTGGCGTGACCTGCTGTGCGTGGATGGGAACTGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCCTGGTGAGGTGGCGTGACCTGCTGTGCGTGGATGGGAACTGAGA  500

seq1  GTATAAAAGAGTGAGAGGCCCGGGTTAGAGGGAGGATTATTATTCGAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAAAGAGTGAGAGGCCCGGGTTAGAGGGAGGATTATTATTCGAGAG  550

seq1  AGGATTATTATTCGAGAGAGGATTGTTATTATTGGGAGATATAAAAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTATTATTCGAGAGAGGATTGTTATTATTGGGAGATATAAAAACAA  600

seq1  GGGAGATATAAACAAGGGAGAGATATAAACAAGGGAGATATAAACAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGATATAAACAAGGGAGAGATATAAACAAGGGAGATATAAACAAGAA  650

seq1  GAAACAGGACTGAATAAACGTGTGCAGAAGGATCCTGCTGTGGCGTCGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGGACTGAATAAACGTGTGCAGAAGGATCCTGCTGTGGCGTCGTT  700

seq1  CTTGCTGGCGAGTTGAGCGCGCGCAACAAGTGGTGCCGAAACCCGGGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGGCGAGTTGAGCGCGCGCAACAAGTGGTGCCGAAACCCGGGAAA  750

seq1  AGAAACATCTTCAGGCAA  768
      ||||||||||||||||||
seq2  AGAAACATCTTCAGGCAA  768

seq1: chr4_145488687_145489626
seq2: B6Ng01-067D01.g_69_1007 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACCTTTCTTGA  50
      ||| ||||||||||||||||||||||||||||||||| |||||||| |||
seq2  GAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG-AACCTTTC-TGA  48

seq1  GAGTACGAATCCATAAGCTCACTGATTATTGAGTCCCTTACTCCTTATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACGAATCCATAAGCTCACTGATTATTGAGTCCCTTACTCCTTATAT  98

seq1  AAGTAATTCATGTCACCTCTAATTG-CCCCCCCCCCTTTTTTTCAGAAAA  149
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAGTAATTCATGTCACCTCTAATTGCCCCCCCCCCCTTTTTTTCAGAAAA  148

seq1  TCATTGCATACGTGGAAAGAATGGGAAGGTATTGGATCAAGACAGCCAGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCATACGTGGAAAGAATGGGAAGGTATTGGATCAAGACAGCCAGT  198

seq1  ACATTGTCCATGAACACATGAATATTCAAGAGAAGTCTTCTAAATGGGAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTCCATGAACACATGAATATTCAAGAGAAGTCTTCTAAATGGGAC  248

seq1  AAGCTTAGCAATGTCATTCTTGAATCCCTCCAGTGTACACCTTACAAAAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTAGCAATGTCATTCTTGAATCCCTCCAGTGTACACCTTACAAAAC  298

seq1  TAATCACAGCTCTGATGCTCTTCAATTCTCGAACCAAAAAAGACTTAAGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCACAGCTCTGATGCTCTTCAATTCTCGAACCAAAAAAGACTTAAGC  348

seq1  CCAGGAACACTAAAGAAGTTTGCAAATACAATGACTCTGTAAACAGTTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAACACTAAAGAAGTTTGCAAATACAATGACTCTGTAAACAGTTTA  398

seq1  AGTTTGTTTTCTACCATTAGTCTCAATCAAGGAATTAACATGCAGAAGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTTTTCTACCATTAGTCTCAATCAAGGAATTAACATGCAGAAGAA  448

seq1  AAAACACAACCGAAATGCAGAATTAGAGAAGGTTTTTGTTTCTAAACATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACAACCGAAATGCAGAATTAGAGAAGGTTTTTGTTTCTAAACATA  498

seq1  AAGTCATGGTGAAAAAAGACAATATTGCAGGGAACCCTTACAAATGTAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATGGTGAAAAAAGACAATATTGCAGGGAACCCTTACAAATGTAGT  548

seq1  GAATTTCACAAATATCTTACCCAGAGAGAAAAACTACAAAGTCAGCAGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCACAAATATCTTACCCAGAGAGAAAAACTACAAAGTCAGCAGAG  598

seq1  AATTTATCATGGAAAGAAACCTTACGAAAGTAGTAAAAGTGACAAATGCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATCATGGAAAGAAACCTTACGAAAGTAGTAAAAGTGACAAATGCT  648

seq1  TTACCCATCAGATCCATCTTAGTATTCATCAGGAAATTCATACAGAAGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCATCAGATCCATCTTAGTATTCATCAGGAAATTCATACAGAAGAG  698

seq1  AAAATTTACAAATGTAGTGAATGTGACAAATGTTTTAAAAACAAATTCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTACAAATGTAGTGAATGTGACAAATGTTTTAAAAACAAATTCAA  748

seq1  TCTTACTATGCATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTATGCATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCA  798

seq1  GTGAATGTGACAAATGCTTTACCAAACAATCCAATCTTAGTATTCATCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATGTGACAAATGCTTTACCAAACAATCCAATCTTAGTATTCATCAG  848

seq1  AGAATTCATACAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAAATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCATACAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAAATG  898

seq1  CTTTACCCAACAATCCTGTCTTAGTATTCATCAGAGAATTC  940
      |||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCCAACAATCCTGTCTTAGTATTCATCAGAGAATTC  939