BAC Information

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BAC

Clone NameB6Ng01-068A24
Chromosome4 (Build37)
Map Location 114,347,276 - 114,523,401
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC242627, LOC100040625, A630098G03Rik, LOC666048
Downstream geneFoxd2, LOC100040736, Foxe3, Cmpk, Stil, Tal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068A24.bB6Ng01-068A24.g
ACCDH886764DH886765
length1,1111,131
definitionDH886764|Mus musculus domesticus DNA, BAC clone: B6Ng01-068A24, 5' end.DH886765|Mus musculus domesticus DNA, BAC clone: B6Ng01-068A24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,347,276 - 114,348,394)(114,522,254 - 114,523,401)
sequence
gaattccaagatagtgaagcagaaatagaagtatggagagtattaaaatt
acagatattcaggtcagttaaggcctcaccaaccaggtaactttttgtgt
aagaaagccagtctatgaatgtctggtggatcaacccaggtaaagagcag
gccccagtggacgtggcccctctaagccagcagcttgctgtggagggttg
tactgccaggtggggcatctacagctgtgagcatcctctcatgcatagag
caaacccagggcctgcagatgggaggtcccatcacagacgctcattcata
acactgaattctaggctatgccagtggtgctaactgctaaagtctgtgga
ccctgcccccgatgctggagaagggatggcaaccctaccttctaggcttc
tgtcaataaacaacacataaacaacacatcacacggaatgtggaattttg
tccttcgtaagtaacctttacttattccttcctgtgtgtctcccaacgtc
cacttatatattctcaaatatttcatgtatatattcattcttgttttgtt
tgctcattcctttctgccctcacatctcgaccatgtactgattcactaat
tttcattccttgtgacatttacctcatcagtaaatgggacagagcaggca
gtttccatgcaaggtttgcatcctagctcaaaggtgcaggcatgggacag
acacatacattatagccgtcacgttaacatccatacatcctaaggctagc
ctatagatcgtgctccttacatagactctcactaccgtttattcactgaa
aactcagtcattatttttatggcatttgccaagcctctacctgtgcaaaa
acctgtgcctgatatgttttagagtacaaagggtggggaagagataaaaa
gataaattatgccagctcctgtcatccttccatttgcccatccatctatc
catccatccatcatccagccactctgataaacctccactggtgttgttta
gcgccactcctagccgcagacttctacctagaatgactgggggaggctat
attcaactgtagctggcctcaaggctgaatataatttcgacctgtaaaca
agaaatgtagt
gaattcaggacctctggaagagcagccagtgcttttaaccgttgaaccat
ttctctagcccccccgccccccagcctccattcttaaatttgataattct
tcccttctctttatttttttttaattcctaaaatgataactttgaccact
gacttaatgttatccttattttaaaatataaacacttaaagttatgaaac
tcattctaagccctgctttatctacattctgcaaattttattgccttact
cttcatcaatattatgcatatttcatgatcattcagttaaaaatcgatca
atcaattaatacttttgagatacttgatttgtagctgagaatgaccttga
acttgggaactcctgcttccacttcatgagtgctgagattatcggcagat
gccaccatacccagttcttgcggtgcaggggatcaaacccaaggcttcat
gcttgctagacaaatactctactagccaagctaaatcctcattagttttc
tctgtttctgttcctttattctaccttaatgttttcatagtacctgtagt
tatatcattagaatatatgatgtcatgaatgattaagttcttattaattt
ttacctttttattactggtccaatctactaaaatacttgctagcaggaac
tacttatcttgtttgatgatacagtccagtactttagaagatcctcataa
acatttgttgggcaaaaataaataaataaataaataaataatgtgtttaa
gttgcggggcagctttcttcaattctccagtttagcctatttgttcatat
gtgtgttgtcctcacatctatttgattactaattacagtctgtctctgtt
tccccactgaccacctatctgagggcaagtagtatgacatcattcacaag
tattcacaccatacacagatgggcattatcaaacactgacaaatgccaaa
tctgtgtcaattcagcagtgagcaggaattatctgctacccagagtcccc
caccttcattccgcccaggactctgggagattggactggtaaagctttaa
gttcgggtgattttgttgactgtgatctggctgactctacagtatcatgc
cttctggttaaggctttcccacaccattaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_114347276_114348394
seq2: B6Ng01-068A24.b_45_1155

seq1  GAATTCCAAGATAGTGAAGCAGAAATAGAAGTATGGAGAGTATTAAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGATAGTGAAGCAGAAATAGAAGTATGGAGAGTATTAAAATT  50

seq1  ACAGATATTCAGGTCAGTTAAGGCCTCACCAACCAGGTAACTTTTTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATATTCAGGTCAGTTAAGGCCTCACCAACCAGGTAACTTTTTGTGT  100

seq1  AAGAAAGCCAGTCTATGAATGTCTGGTGGATCAACCCAGGTAAAGAGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGCCAGTCTATGAATGTCTGGTGGATCAACCCAGGTAAAGAGCAG  150

seq1  GCCCCAGTGGACGTGGCCCCTCTAAGCCAGCAGCTTGCTGTGGAGGGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGTGGACGTGGCCCCTCTAAGCCAGCAGCTTGCTGTGGAGGGTTG  200

seq1  TACTGCCAGGTGGGGCATCTACAGCTGTGAGCATCCTCTCATGCATAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCCAGGTGGGGCATCTACAGCTGTGAGCATCCTCTCATGCATAGAG  250

seq1  CAAACCCAGGGCCTGCAGATGGGAGGTCCCATCACAGACGCTCATTCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCAGGGCCTGCAGATGGGAGGTCCCATCACAGACGCTCATTCATA  300

seq1  ACACTGAATTCTAGGCTATGCCAGTGGTGCTAACTGCTAAAGTCTGTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAATTCTAGGCTATGCCAGTGGTGCTAACTGCTAAAGTCTGTGGA  350

seq1  CCCTGCCCCCGATGCTGGAGAAGGGATGGCAACCCTACCTTCTAGGCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCCCCGATGCTGGAGAAGGGATGGCAACCCTACCTTCTAGGCTTC  400

seq1  TGTCAATAAACAACACATAAACAACACATCACACGGAATGTGGAATTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATAAACAACACATAAACAACACATCACACGGAATGTGGAATTTTG  450

seq1  TCCTTCGTAAGTAACCTTTACTTATTCCTTCCTGTGTGTCTCCCAACGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCGTAAGTAACCTTTACTTATTCCTTCCTGTGTGTCTCCCAACGTC  500

seq1  CACTTATATATTCTCAAATATTTCATGTATATATTCATTCTTGTTTTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATATATTCTCAAATATTTCATGTATATATTCATTCTTGTTTTGTT  550

seq1  TGCTCATTCCTTTCTGCCCTCACATCTCGACCATGTACTGATTCACTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATTCCTTTCTGCCCTCACATCTCGACCATGTACTGATTCACTAAT  600

seq1  TTTCATTCCTTGTGACATTTACCTCATCAGTAAATGGGACAGAGCAGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTCCTTGTGACATTTACCTCATCAGTAAATGGGACAGAGCAGGCA  650

seq1  GTTTCCATGCAAGGTTTGCATCCTAGCTCAAAGGTGCAGGCATGGGACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCATGCAAGGTTTGCATCCTAGCTCAAAGGTGCAGGCATGGGACAG  700

seq1  ACACATACATTATAGCCGTCACGTTAACATCCATACATCCTAAGGCTAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATACATTATAGCCGTCACGTTAACATCCATACATCCTAAGGCTAGC  750

seq1  CTATAGATCGTGCTCCTTACATAGACTCTCACTACCGTTTATTCACTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGATCGTGCTCCTTACATAGACTCTCACTACCGTTTATTCACTGAA  800

seq1  AACTCAGTCATTATTTTTATGGCATTTGCCAAGCCTCTACCTGTGCAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGTCATTATTTTTATGGCATTTGCCAAGCCTCTACCTGTGCAAAA  850

seq1  ACCTGTGCCTGATATGTTTTAGAGTACAAAGGGTGGGGAAGAGATAAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGCCTGATATGTTTTAGAGTACAAAGGGTGGGGAAGAGATAAAAA  900

seq1  GATAAATTATGCCAGCTCCTGTCATCCTTCCATTTGCCCATCCATCTATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATTATGCCAGCTCCTGTCATCCTTCCATTTGCCCATCCATCTATC  950

seq1  CATCCATCCATCATCCAGCCACTCTGATAAACCTCCACTGGTGTTGTTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATCCATCATCCAGCCACTCTGATAAACCTCCACTGGTGTTGTTTA  1000

seq1  GCGCCAACTCCTAAGCCGGCAGACTTCTACCTAGAATGACTGGGGGGAGG  1050
      ||||| |||||| |||| ||||||||||||||||||||||| ||||||||
seq2  GCGCC-ACTCCT-AGCC-GCAGACTTCTACCTAGAATGACT-GGGGGAGG  1046

seq1  CTATATTCAACTGTAGCTGGGCCTCAAAGGCTGAATATAATTTCAGAACT  1100
      |||||||||||||||||| |||||| ||||||||||||||||||   || 
seq2  CTATATTCAACTGTAGCT-GGCCTC-AAGGCTGAATATAATTTC--GACC  1092

seq1  TGTAAACAAGAAATGTAGT  1119
      |||||||||||||||||||
seq2  TGTAAACAAGAAATGTAGT  1111

seq1: chr4_114522254_114523401
seq2: B6Ng01-068A24.g_66_1196 (reverse)

seq1  TGTAATGGTGTGTGGGAAAGAGCCTTCTAAACCAGAAAGCATGGTACTGA  50
      |||||||  |||||||||  ||||||   |||||||| ||||| ||||| 
seq2  TGTAATG--GTGTGGGAA--AGCCTT---AACCAGAAGGCATGATACTGT  43

seq1  TGTGTTTCAGGCCCAGATCACAGTCAAACAAAATCACCCGAACTTAAAGC  100
       | |  ||||  ||||||||||||| ||||||||||||||||||||||||
seq2  AGAG--TCAG--CCAGATCACAGTC-AACAAAATCACCCGAACTTAAAGC  88

seq1  TTTTACCAGTTCAAATCTCCCAGAGTCCTGGGGCGGGAATGGAGGTGGGG  150
       |||||||| || |||||||||||||||||||   |||||| ||||||||
seq2  -TTTACCAG-TCCAATCTCCCAGAGTCCTGGG--CGGAATGAAGGTGGGG  134

seq1  GACTCTGGGTTAGCAGATAATTCCTGCTCACTGCTGAATTGACACAGATT  200
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGGG-TAGCAGATAATTCCTGCTCACTGCTGAATTGACACAGATT  183

seq1  TGGCATTTGTCAGTGTTTGATAATGCCCATCTGTGTATGGTGTGAATACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTTGTCAGTGTTTGATAATGCCCATCTGTGTATGGTGTGAATACT  233

seq1  TGTGAATGATGTCATACTACTTGCCCTCAGATAGGTGGTCAGTGGGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATGATGTCATACTACTTGCCCTCAGATAGGTGGTCAGTGGGGAAA  283

seq1  CAGAGACAGACTGTAATTAGTAATCAAATAGATGTGAGGACAACACACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACAGACTGTAATTAGTAATCAAATAGATGTGAGGACAACACACAT  333

seq1  ATGAACAAATAGGCTAAACTGGAGAATTGAAGAAAGCTGCCCCGCAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAAATAGGCTAAACTGGAGAATTGAAGAAAGCTGCCCCGCAACTT  383

seq1  AAACACATTATTTATTTATTTATTTATTTATTTTTGCCCAACAAATGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATTATTTATTTATTTATTTATTTATTTTTGCCCAACAAATGTTT  433

seq1  ATGAGGATCTTCTAAAGTACTGGACTGTATCATCAAACAAGATAAGTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGATCTTCTAAAGTACTGGACTGTATCATCAAACAAGATAAGTAGT  483

seq1  TCCTGCTAGCAAGTATTTTAGTAGATTGGACCAGTAATAAAAAGGTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTAGCAAGTATTTTAGTAGATTGGACCAGTAATAAAAAGGTAAAA  533

seq1  ATTAATAAGAACTTAATCATTCATGACATCATATATTCTAATGATATAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATAAGAACTTAATCATTCATGACATCATATATTCTAATGATATAAC  583

seq1  TACAGGTACTATGAAAACATTAAGGTAGAATAAAGGAACAGAAACAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGTACTATGAAAACATTAAGGTAGAATAAAGGAACAGAAACAGAGA  633

seq1  AAACTAATGAGGATTTAGCTTGGCTAGTAGAGTATTTGTCTAGCAAGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAATGAGGATTTAGCTTGGCTAGTAGAGTATTTGTCTAGCAAGCAT  683

seq1  GAAGCCTTGGGTTTGATCCCCTGCACCGCAAGAACTGGGTATGGTGGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTTGGGTTTGATCCCCTGCACCGCAAGAACTGGGTATGGTGGCAT  733

seq1  CTGCCGATAATCTCAGCACTCATGAAGTGGAAGCAGGAGTTCCCAAGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCGATAATCTCAGCACTCATGAAGTGGAAGCAGGAGTTCCCAAGTTC  783

seq1  AAGGTCATTCTCAGCTACAAATCAAGTATCTCAAAAGTATTAATTGATTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCATTCTCAGCTACAAATCAAGTATCTCAAAAGTATTAATTGATTG  833

seq1  ATCGATTTTTAACTGAATGATCATGAAATATGCATAATATTGATGAAGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGATTTTTAACTGAATGATCATGAAATATGCATAATATTGATGAAGAG  883

seq1  TAAGGCAATAAAATTTGCAGAATGTAGATAAAGCAGGGCTTAGAATGAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCAATAAAATTTGCAGAATGTAGATAAAGCAGGGCTTAGAATGAGT  933

seq1  TTCATAACTTTAAGTGTTTATATTTTAAAATAAGGATAACATTAAGTCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAACTTTAAGTGTTTATATTTTAAAATAAGGATAACATTAAGTCAG  983

seq1  TGGTCAAAGTTATCATTTTAGGAATTAAAAAAAAATAAAGAGAAGGGAAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAAAGTTATCATTTTAGGAATTAAAAAAAAATAAAGAGAAGGGAAG  1033

seq1  AATTATCAAATTTAAGAATGGAGGCTGGGGGGCGGGGGGGCTAGAGAAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCAAATTTAAGAATGGAGGCTGGGGGGCGGGGGGGCTAGAGAAAT  1083

seq1  GGTTCAACGGTTAAAAGCACTGGCTGCTCTTCCAGAGGTCCTGAATTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAACGGTTAAAAGCACTGGCTGCTCTTCCAGAGGTCCTGAATTC  1131