BAC Information

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BAC

Clone NameB6Ng01-068B18
Chromosome4 (Build37)1 (Build37)
Map Location 35,610,406 - 35,610,74299,507,230 - 99,508,174
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSlc35a1, 1700003M02Rik, Gm136, 1810030N24Rik, Zfp292, Cga, Mobkl2b, Ifnk, 3110043O21Rik, LOC620559, LOC621227
Downstream geneLingo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068B18.bB6Ng01-068B18.g
ACCDH886796DH886797
length765944
definitionDH886796|Mus musculus domesticus DNA, BAC clone: B6Ng01-068B18, 5' end.DH886797|Mus musculus domesticus DNA, BAC clone: B6Ng01-068B18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(35,610,406 - 35,610,742)(99,507,230 - 99,508,174)
sequence
gaattcaataaaaaaaataatctacagcaaactagtagccaacatcaaag
taaatggagagacactggaagcaatcccactaaaatcagggactagacaa
ggctgcccactttttccctacctattcaatatagtacttgaagtcctagc
cagagcaattatacagcaaaaggaggtcaagaggatccaaattggaaagg
aagaagtcaaaatattactatttgcagatgatatgatagtatatataagt
gaccctaaaaattccaccagagaattcctaaaccttctaaacagcctcag
tgaagtagctggatataaaattaactcaagcaaatcaatggcttttacac
aaaggataaacaggatgagaaaaagttagggaaacaaaacccttcacaat
agtcacaaataatataaaataccttggtgtgactctaaggaagtgaaaga
tctgtatgataagaacttcaagtctctaaagaaagaaattaaagaagatc
tcagaagatggaaagatctcccatgctcatggattggcaggatcaatata
gtaaaaatggctatcttgctgaaagcaatctacagattcaatgcaatccc
catcaaaattccaactcaattcttcagcgaattagaaaaggtaatttgca
aattcatctgaaataacaaaaaacgtatggtagcagaaactcttctcaat
gataaaagaatctctggtggaatgaccatgcctgacctcaagctctacta
cagagcaattgtgat
gaattctctaagactatcaggacaaaattctaaaatataaatctatcttt
caaattgttttatggacattgtcctgaagtaatctatgaaggagaaggat
ggggattattttgtatctgctttgcaatctagctgagtagttcactttag
tatagatccatgcaaccctatgatatcattaattgctattattttcttaa
taattatgtatccttaaaacatgttacattattttatactctaggtatga
acctgctcatttcaataatgtactttgtgataccagtagtaaaggcaaat
gtatcaaaagaccaaagccttatctgaaacagtacaaatgaagaatgctt
aactctcagttaagatggagaatgggttctagactcaagttgctatagta
tatagcaattaaaagttggtttctttataggacctcgatgttggtagtta
tgtagttatgaggagaaaaagtgaaaactttctctactgtagtatgcttc
caactgaggaagcatattaataaaattacacactaatgataaaataaaaa
tcactcaagtgagagggataaatcataactgtaataaatggtaagaagga
aggttactgtgagtatgtgtaataggcatgacttagatttaatttcccaa
ggaactgaatagtgaagtgaaatttgattgtgggcaggagctgggaagga
catcgagagatgttatgacagagtatatagtagatagatcactgtatgct
tgcacatgtagatagagagtgagtgtgtctactggtatgtggaaagggct
tgcagagagtgctgtaggatttgtgttttgaaagttttgactcttctgca
ctatgaaaaagcatcagaaggtgtgagaccagaactggtgacccagagtg
ggaaataacaccagtagaggtagggatgatggatatggattgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_35610406_35610742
seq2: B6Ng01-068B18.b_126_457 (reverse)

seq1  ATTATTTGTGACTATTGAGAAGGGTGTTGTTTCCCTAATTTCTTTCTCAG  50
      ||||||||||||||||| ||||||| |||||||||||| || ||||||| 
seq2  ATTATTTGTGACTATTGTGAAGGGTTTTGTTTCCCTAACTT-TTTCTCAT  49

seq1  CCTGTTTATTCTTTGTGTAGAGAAAGGCCATTGACTTGTTTGAGTTAATT  100
      ||||||||| ||||||||    ||| |||||||| ||| |||||||||||
seq2  CCTGTTTATCCTTTGTGT----AAAAGCCATTGATTTGCTTGAGTTAATT  95

seq1  TTATATCCAGCTACTTCACTGAAGCTGTTTATCAGGTTTAGGAGTTCTCT  150
      |||||||||||||||||||||| ||||||||  |||||||||| ||||||
seq2  TTATATCCAGCTACTTCACTGAGGCTGTTTAGAAGGTTTAGGAATTCTCT  145

seq1  GGTAGAATTTTTAGGGTCACTTATATATACTATCATATCATCTGCAAAAA  200
      ||| |||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGTGGAATTTTTAGGGTCACTTATATATACTATCATATCATCTGCAAATA  195

seq1  GTTATATTTTGACTTCATCTTTTCCAATTTGTATCCCCTTGATCCCCTTT  250
      || ||||||||||||| || ||||||||||| |||| ||||| | |||||
seq2  GTAATATTTTGACTTCTTCCTTTCCAATTTGGATCCTCTTGACCTCCTTT  245

seq1  TGTTGTCAAATTGCTCTGGCTAGGACTTCAAGTACAATGTTGAATAGATA  300
      || |||  ||||||||||||||||||||||||||| || |||||||| ||
seq2  TGCTGTATAATTGCTCTGGCTAGGACTTCAAGTACTATATTGAATAGGTA  295

seq1  GGGAGAAAGTGGGCAGCCTTGTCTAGTCCCTGATTTT  337
      |||| ||||||||||||||||||||||||||||||||
seq2  GGGAAAAAGTGGGCAGCCTTGTCTAGTCCCTGATTTT  332

seq1: chr1_99507230_99508174
seq2: B6Ng01-068B18.g_67_1010 (reverse)

seq1  TCCAATCCATAATCCATCATCCCTTACCTCTACTGGTGTTATTTCCCACT  50
      |||||||||| |||||||||||| ||||||||||||||||||||||||||
seq2  TCCAATCCAT-ATCCATCATCCC-TACCTCTACTGGTGTTATTTCCCACT  48

seq1  CTGGGTCACCAGTTCTGGTCTCACACCTTCTGATGCTTTTTCATAGTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCACCAGTTCTGGTCTCACACCTTCTGATGCTTTTTCATAGTGCA  98

seq1  GAAGAGTC-AAACTTTCAAAACACAAATCCTACAGCACTCTCTGCAAGCC  149
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTCAAAACTTTCAAAACACAAATCCTACAGCACTCTCTGCAAGCC  148

seq1  CTTTCCACATACCAGTAGACACACTCACTCTCTATCTACATGTGCAAGCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCACATACCAGTAGACACACTCACTCTCTATCTACATGTGCAAGCA  198

seq1  TACAGTGATCTATCTACTATATACTCTGTCATAACATCTCTCGATGTCCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGATCTATCTACTATATACTCTGTCATAACATCTCTCGATGTCCT  248

seq1  TCCCAGCTCCTGCCCACAATCAAATTTCACTTCACTATTCAGTTCCTTGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCTCCTGCCCACAATCAAATTTCACTTCACTATTCAGTTCCTTGG  298

seq1  GAAATTAAATCTAAGTCATGCCTATTACACATACTCACAGTAACCTTCCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAAATCTAAGTCATGCCTATTACACATACTCACAGTAACCTTCCT  348

seq1  TCTTACCATTTATTACAGTTATGATTTATCCCTCTCACTTGAGTGATTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCATTTATTACAGTTATGATTTATCCCTCTCACTTGAGTGATTTT  398

seq1  TATTTTATCATTAGTGTGTAATTTTATTAATATGCTTCCTCAGTTGGAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATCATTAGTGTGTAATTTTATTAATATGCTTCCTCAGTTGGAAG  448

seq1  CATACTACAGTAGAGAAAGTTTTCACTTTTTCTCCTCATAACTACATAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTACAGTAGAGAAAGTTTTCACTTTTTCTCCTCATAACTACATAAC  498

seq1  TACCAACATCGAGGTCCTATAAAGAAACCAACTTTTAATTGCTATATACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAACATCGAGGTCCTATAAAGAAACCAACTTTTAATTGCTATATACT  548

seq1  ATAGCAACTTGAGTCTAGAACCCATTCTCCATCTTAACTGAGAGTTAAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAACTTGAGTCTAGAACCCATTCTCCATCTTAACTGAGAGTTAAGC  598

seq1  ATTCTTCATTTGTACTGTTTCAGATAAGGCTTTGGTCTTTTGATACATTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCATTTGTACTGTTTCAGATAAGGCTTTGGTCTTTTGATACATTT  648

seq1  GCCTTTACTACTGGTATCACAAAGTACATTATTGAAATGAGCAGGTTCAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTACTACTGGTATCACAAAGTACATTATTGAAATGAGCAGGTTCAT  698

seq1  ACCTAGAGTATAAAATAATGTAACATGTTTTAAGGATACATAATTATTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGAGTATAAAATAATGTAACATGTTTTAAGGATACATAATTATTAA  748

seq1  GAAAATAATAGCAATTAATGATATCATAGGGTTGCATGGATCTATACTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAATAGCAATTAATGATATCATAGGGTTGCATGGATCTATACTAA  798

seq1  AGTGAACTACTCAGCTAGATTGCAAAGCAGATACAAAATAATCCCCATCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAACTACTCAGCTAGATTGCAAAGCAGATACAAAATAATCCCCATCC  848

seq1  TTCTCCTTCATAGATTACTTCAGGACAATGTCCATAAAACAATTTGAAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTCATAGATTACTTCAGGACAATGTCCATAAAACAATTTGAAAG  898

seq1  ATAGATTTATATTTTAGAATTTTGTCCTGATAGTCTTAGAGAATTC  945
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTTATATTTTAGAATTTTGTCCTGATAGTCTTAGAGAATTC  944