BAC Information

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BAC

Clone NameB6Ng01-068E19
Chromosome4 (Build37)
Map Location 68,177,028 - 68,178,138
singlet/doubletsinglet
Overlap genenone
Upstream geneHmgb1-rs18, LOC433715, Tcp1-ps1
Downstream geneDbc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068E19.bB6Ng01-068E19.g
ACCDH886926DH886927
length1,0981,248
definitionDH886926|Mus musculus domesticus DNA, BAC clone: B6Ng01-068E19, 5' end.DH886927|Mus musculus domesticus DNA, BAC clone: B6Ng01-068E19, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacaatgttaacattgttgacagtttatgatgctactttgttata
gatgcccatcccttccttgctatttatttcagaatacctgtggcttccac
tcactacatcgctgtaatagcaatacctgatcaccagcgtagtgccccaa
ttaaatgcaactccagcactgacagatgtttctcaggaaggataaaacat
tcaatgtcattttattaagttttcaattcaaactcattttcagaatcatt
tatttggggtagattcattgaaaaaaatcaacaacaacaacaaaacagtg
agatacatcttttgttcaaaagtaaaataagaacaactaaaatctaattt
atttcttatatttgtggttgtgagtctagcctttaatggctgagccatct
ctctagccatgatttctttctataagaggaaaaagagtaaacaaaccaac
aggcctctactacactagggatatatagatatatatgtgtgtgtgtgtgt
atatatatacatttaatggctcagaaagaatctcttatttgtccttttaa
ggtttgagagtacatattattataaagcagtaacactgtgtgggtggaca
ccaaacaatgggaaggagaggaaatattctgggaactgactgacctaaaa
gactacttaggggaagaagtggtattaaagaagaaaataagagaggagta
aaaacaaaaataaaatatcagtgaagtgaaagaaaaattggtggggaaat
gtgtcctctcctactgatgataacttcattctgctttattgttgttggtc
cccttcccctttttattaatcattaatttaagtacttaaatctcaatgga
attttctcctccctccccttactctcagtctttcttccctttcttctccc
ctcccacccagtcttccttcatttctctttctttcagaaaagggcaaggt
accaatggatatcaaccagaccgatgtatcaagttgcaataagacttggc
aatgctttacctattgaggttgagaaagtaaacaggagaggaaaggttcc
aaagatggcaagagtcaaagaagtcctactcttgtagttagaagtttt
gaattcaataactcacttaaagagatacaggagaacactgctaaagagtt
acaagtccttaaagaaaaacaggaaaacactgctaaagagttacaagtcc
ttaaagaaaaacaggaaaacacaaccaaataggtagaagtccttatagaa
aaacaggaaaacacatccaaacaggtgatggaaatgaacaaaaccatact
agacctaaaaagggaagtagacacaataaagaaaacccaaagtgaggcaa
cgctggagatagaaaccctaggaaagaaatctggaaccatagatgccagc
atcggcaacagaatacaagagatggaagagagaatctcaggtgcagaaga
caccatagagaacatgggcacaacaatcaaagaaaatggaaaatgcaaaa
agatcctaactcaaaacatccaggaaatccaggacacaatgagaagacca
aacctacggataataggagtggatgagaatgaagattttcaactcaaagg
accagcaaacatcttcaacaaaattattgaagaaaacttcccaaatctaa
agaaagagatacccatgaatatacaagaagcctacagaactccaaataga
ctggaccagaaaagaaattcctcccgacacataataatcagaacatcaaa
tgcactaaataaagatagaatactaaaagcagtaagggaaaaaggtcaag
taaaatataaaggcaagcctatcagaattacaccagatttttcaccagag
actatgaaagccagaagagcctggacagatgttatacagacactaagaga
acacaaatgccagcccaggctactatacccagccaaactctcaattacca
tagatggagaaaccaaatattccacgacaaaactaaattcacccattatc
tctccacgaatccagcccttcaaaggataataacagaaaaaaacaataca
aggacgggaaccacgccctagaaaaaacaagaagaaaatccctcacaacc
taaaagaagacagccacaagaacagaatgccaactttaacacaaaataac
agaagcaacaattacctttctatttctctaatatcaatggactcaatccc
aataaaaaagatagactaacgactggctaactaacaggacccaattctgt
ctgctacgaacatctcagtaaaggcagacctacctagttagctggaacat
tcagacaatgctgagaacagcgtggaagatgccctttatattcgtata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_68177028_68178138
seq2: B6Ng01-068E19.b_46_1143 (reverse)

seq1  AAAACTTCTAACTACAAGAGTAGGGACTGTCTTTGACTCTGTTGCCTGTC  50
      |||||||||||||||||||||| ||||| ||||||||||  |||||  ||
seq2  AAAACTTCTAACTACAAGAGTA-GGACT-TCTTTGACTC--TTGCC-ATC  45

seq1  TTTGGAACCCTTTCCTCCTCCTGGTTTACCTTCTCTAACCTCAATAGGTA  100
      ||||||| |||||||| ||||| |||||| ||||| ||||||||||||||
seq2  TTTGGAA-CCTTTCCT-CTCCT-GTTTACTTTCTC-AACCTCAATAGGTA  91

seq1  AAGCATTTGCCAAGTCTTATTGCAACTTGATACATCGGTCTGGTTGATAT  150
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCA-TTGCCAAGTCTTATTGCAACTTGATACATCGGTCTGGTTGATAT  140

seq1  CCATTGGTACCTTGCCCTTTTCTGAAAAGAAAGGAGAAATGAAGGAGGAC  200
      |||||||||||||||||||||||| ||||||| ||||||||||||| |||
seq2  CCATTGGTACCTTGCCCTTTTCTG-AAAGAAA-GAGAAATGAAGGAAGAC  188

seq1  TGGGTGGGAGGGGAGAAGAAAGGGAAGAAAGACTGAGAGTAAGGGGAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGGAGGGGAGAAGAAAGGGAAGAAAGACTGAGAGTAAGGGGAGGG  238

seq1  AGGAGAAAATTCCATTGAGATTTAAGTACTTAAATTAATGAATTAATAAA  300
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGGAGAAAATTCCATTGAGATTTAAGTACTTAAATTAATG-ATTAATAAA  287

seq1  AAGGGGAAGGGGACCAACAACAATAAAGCAGAATGAAGTTATCATCAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGAAGGGGACCAACAACAATAAAGCAGAATGAAGTTATCATCAGTA  337

seq1  GGAGAGGACACATTTCCCCACCAATTTTTCTTTCACTTCACTGATATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGACACATTTCCCCACCAATTTTTCTTTCACTTCACTGATATTTT  387

seq1  ATTTTTGTTTTTACTCCTCTCTTATTTTCTTCTTTAATACCACTTCTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTTTTTACTCCTCTCTTATTTTCTTCTTTAATACCACTTCTTCC  437

seq1  CCTAAGTAGTCTTTTAGGTCAGTCAGTTCCCAGAATATTTCCTCTCCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGTAGTCTTTTAGGTCAGTCAGTTCCCAGAATATTTCCTCTCCTTC  487

seq1  CCATTGTTTGGTGTCCACCCACACAGTGTTACTGCTTTATAATAATATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTTTGGTGTCCACCCACACAGTGTTACTGCTTTATAATAATATGT  537

seq1  ACTCTCAAACCTTAAAAGGACAAATAAGAGATTCTTTCTGAGCCATTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCAAACCTTAAAAGGACAAATAAGAGATTCTTTCTGAGCCATTAAA  587

seq1  TGTATATATATACACACACACACACATATATATCTATATATCCCTAGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATATATACACACACACACACATATATATCTATATATCCCTAGTGT  637

seq1  AGTAGAGGCCTGTTGGTTTGTTTACTCTTTTTCCTCTTATAGAAAGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAGGCCTGTTGGTTTGTTTACTCTTTTTCCTCTTATAGAAAGAAAT  687

seq1  CATGGCTAGAGAGATGGCTCAGCCATTAAAGGCTAGACTCACAACCACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTAGAGAGATGGCTCAGCCATTAAAGGCTAGACTCACAACCACAA  737

seq1  ATATAAGAAATAAATTAGATTTTAGTTGTTCTTATTTTACTTTTGAACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGAAATAAATTAGATTTTAGTTGTTCTTATTTTACTTTTGAACAA  787

seq1  AAGATGTATCTCACTGTTTTGTTGTTGTTGTTGATTTTTTTCAATGAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTATCTCACTGTTTTGTTGTTGTTGTTGATTTTTTTCAATGAATC  837

seq1  TACCCCAAATAAATGATTCTGAAAATGAGTTTGAATTGAAAACTTAATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCAAATAAATGATTCTGAAAATGAGTTTGAATTGAAAACTTAATAA  887

seq1  AATGACATTGAATGTTTTATCCTTCCTGAGAAACATCTGTCAGTGCTGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACATTGAATGTTTTATCCTTCCTGAGAAACATCTGTCAGTGCTGGA  937

seq1  GTTGCATTTAATTGGGGCACTACGCTGGTGATCAGGTATTGCTATTACAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCATTTAATTGGGGCACTACGCTGGTGATCAGGTATTGCTATTACAG  987

seq1  CGATGTAGTGAGTGGAAGCCACAGGTATTCTGAAATAAATAGCAAGGAAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGTAGTGAGTGGAAGCCACAGGTATTCTGAAATAAATAGCAAGGAAG  1037

seq1  GGATGGGCATCTATAACAAAGTAGCATCATAAACTGTCAACAATGTTAAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGCATCTATAACAAAGTAGCATCATAAACTGTCAACAATGTTAAC  1087

seq1  ATTGTGAATTC  1111
      |||||||||||
seq2  ATTGTGAATTC  1098