BAC Information

Click to search

BAC

Clone NameB6Ng01-068M16
Chromosome4 (Build37)
Map Location 9,763,996 - 9,794,559
singlet/doubletdoublet
Overlap geneGdf6
Upstream geneChd7, LOC666782, LOC100039584, 4933402J24Rik, Asph
Downstream gene4930448K20Rik, LOC666840, 1700123O12Rik, LOC383991, LOC100039656, LOC545589
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068M16.bB6Ng01-068M16.g
ACCDH887278DH887279
length1,1091,068
definitionDH887278|Mus musculus domesticus DNA, BAC clone: B6Ng01-068M16, 5' end.DH887279|Mus musculus domesticus DNA, BAC clone: B6Ng01-068M16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,763,996 - 9,765,111)(9,793,485 - 9,794,559)
sequence
gaattctcattgcatgtaaataaacctgaatatgagaacctctgttttcc
cagagctctagtaaatagactttttaacagcaatctcatgtaaagtagcc
atgtgcttataattacccaaacattgtagatcccctgtgtggaatttcac
gtctttattgcttctattttaatgtttacaaagttggtagtaatttatca
aaccaaatctgatcctaaacaggaaagacgacttcctaggtgactgtaat
ttttcaatgcacggtttggcaagaatcagactactcttcgaattgactcg
ttttgactttcttaggaaccccgcttgctcatttgtgaggcacttttctc
actccactaaagtatccccgtacctattagcagttggcaatgtgttttta
atctagaatatttggacagacataaaacatgttgaatcattacccagaga
gattgttgccacaaagtcacagtgaaatacagtaaaactccttgcgtcaa
acaaacttaacctttatagagaagctacttaccaaaaggaacgatttaag
ggagaatgaaaactagatcaatgaaaacaattgcacatgtacattaagaa
caaaagcagaaagagtgaagatgcctaaaattaacagagaactttgctat
tttttttaaaaaaatcaaaacatccagctacttattattaccatactcag
aatctacacacactgatgaatctgatcttttatttaatgtatgaattata
ccaagaggtttcattataatatccctgtacgtgctccctggtgtaggcaa
tgtagggtttacactaacttttcaaaactgcacagaaggtttaattgcac
aaaaagacctaatctaatctgcaccaagggcatacatattttcccttcca
tctttgtgacaaagcttgcaggagttgtttaaattttatttttttgctga
tggctaaagttgtagctatggggtaccatagtaaaggacagagtgttgag
tttaacaaccaagaaatgaaagagctcagttcaggtcttctggtaccacc
acacatcacagaatttagtactggactcacctgcagtgctcattctgatg
tggtctccc

gaattcccagtgtggagataaccacatctgagagatttcaaaggacagtt
ggagacatggccgtcccaagagccattttctctaactaccttgacctgtc
atctccactgaacttttaaaggaaggaatgaagcaggaaccagatggaac
tttgagaggattcatgagtgggaagaacaagctgtaacaatcaggattca
ggtagaagaagtggcttctgggagcttgagaaatgttggaaactcagctt
taggttggaactttctttatcttgtcttctacacagaaagtttcccagag
ccttgaacagtgcctgccacacagtggtaactcacaaaaaagctcttaaa
ctcctcaagcacaggaccatgttttcatgatgagcgctgagaatggagac
cctagagctaggcaggaagtgagcagaaatgggcagtttcctttagctgt
cattttgtagctcttccccaggggaaaaataaaggagctcaaggaaacag
aattctggttaagaatatttggtagtaaaggtaaaagatgtattaaagag
ttataggagggttttctaattcaatacagtaaaaccatctgtaagagccc
taaaagagtctgggaaatataaaaaccacattaatcagtggagaaaacta
gctatcctcttgatagagaatgtggaactcaagttactcaaatcaggtga
aaagtctagttgggacctagaagaggaacccttgaaaggcaggcgtttgg
gggtttctgttcttataatgacttttagggaagacttgattttttttttt
ttggactggagggaaaaatctttttacttacttcttttatcgaccaaatc
cacaactagattgcactactgttgattgaatagatttccttgtgtttaat
tcttagagtggactagttgggcagaatctgtgtttgcttgtttgctgctt
gcttgcttgctgcttgctgcaggtctttgatctgagccaagctggctttg
aactctatgggtgtcctgtgggtgcatttgcacattgcatgtggtaggtg
gtgggacctgtacacatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_9763996_9765111
seq2: B6Ng01-068M16.b_42_1150

seq1  GAATTCTCATTGCATGTAAATAAACCTGAATATGAGAACCTCTGTTTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTGCATGTAAATAAACCTGAATATGAGAACCTCTGTTTTCC  50

seq1  CAGAGCTCTAGTAAATAGACTTTTTAACAGCAATCTCATGTAAAGTAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTCTAGTAAATAGACTTTTTAACAGCAATCTCATGTAAAGTAGCC  100

seq1  ATGTGCTTATAATTACCCAAACATTGTAGATCCCCTGTGTGGAATTTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTTATAATTACCCAAACATTGTAGATCCCCTGTGTGGAATTTCAC  150

seq1  GTCTTTATTGCTTCTATTTTAATGTTTACAAAGTTGGTAGTAATTTATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTATTGCTTCTATTTTAATGTTTACAAAGTTGGTAGTAATTTATCA  200

seq1  AACCAAATCTGATCCTAAACAGGAAAGACGACTTCCTAGGTGACTGTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAATCTGATCCTAAACAGGAAAGACGACTTCCTAGGTGACTGTAAT  250

seq1  TTTTCAATGCACGGTTTGGCAAGAATCAGACTACTCTTCGAATTGACTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATGCACGGTTTGGCAAGAATCAGACTACTCTTCGAATTGACTCG  300

seq1  TTTTGACTTTCTTAGGAACCCCGCTTGCTCATTTGTGAGGCACTTTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACTTTCTTAGGAACCCCGCTTGCTCATTTGTGAGGCACTTTTCTC  350

seq1  ACTCCACTAAAGTATCCCCGTACCTATTAGCAGTTGGCAATGTGTTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACTAAAGTATCCCCGTACCTATTAGCAGTTGGCAATGTGTTTTTA  400

seq1  ATCTAGAATATTTGGACAGACATAAAACATGTTGAATCATTACCCAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGAATATTTGGACAGACATAAAACATGTTGAATCATTACCCAGAGA  450

seq1  GATTGTTGCCACAAAGTCACAGTGAAATACAGTAAAACTCCTTGCGTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTTGCCACAAAGTCACAGTGAAATACAGTAAAACTCCTTGCGTCAA  500

seq1  ACAAACTTAACCTTTATAGAGAAGCTACTTACCAAAAGGAACGATTTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTTAACCTTTATAGAGAAGCTACTTACCAAAAGGAACGATTTAAG  550

seq1  GGAGAATGAAAACTAGATCAATGAAAACAATTGCACATGTACATTAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATGAAAACTAGATCAATGAAAACAATTGCACATGTACATTAAGAA  600

seq1  CAAAAGCAGAAAGAGTGAAGATGCCTAAAATTAACAGAGAACTTTGCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCAGAAAGAGTGAAGATGCCTAAAATTAACAGAGAACTTTGCTAT  650

seq1  TTTTTTTAAAAAAATCAAAACATCCAGCTACTTATTATTACCATACTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAAAAAAATCAAAACATCCAGCTACTTATTATTACCATACTCAG  700

seq1  AATCTACACACACTGATGAATCTGATCTTTTATTTAATGTATGAATTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTACACACACTGATGAATCTGATCTTTTATTTAATGTATGAATTATA  750

seq1  CCAAGAGGTTTCATTATAATATCCCTGTACGTGCT-CCTGGTGTAGGCAA  799
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCAAGAGGTTTCATTATAATATCCCTGTACGTGCTCCCTGGTGTAGGCAA  800

seq1  TGTAGGGTTTACACTAACTTTTCAAAACTGCACAGAAGGTTTAATTGCAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGGTTTACACTAACTTTTCAAAACTGCACAGAAGGTTTAATTGCAC  850

seq1  AAAAAGACCTAATCTAATCTGCACCAAGGGCATACATATTTTCCCTTCCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGACCTAATCTAATCTGCACCAAGGGCATACATATTTTCCCTTCCA  900

seq1  TCTTTGTGACAAAGCTTGCCAGGAGTTGTTTAAATTTTA-TTTTTTGCTG  948
      |||||||||||||||||| |||||||||||||||||||| ||||||||||
seq2  TCTTTGTGACAAAGCTTG-CAGGAGTTGTTTAAATTTTATTTTTTTGCTG  949

seq1  ATGGCTAAAAGTTGTAGCTATGGGGTACCATAGTAAAAGGACAGAGTGTT  998
      |||||| ||||||||||||||||||||||||||| |||||||||||||||
seq2  ATGGCT-AAAGTTGTAGCTATGGGGTACCATAGT-AAAGGACAGAGTGTT  997

seq1  GAGTTTAAACAACCAAGAAATGACAGAGCTCAAGTTCCAGGTCCTTCTGT  1048
      |||||| |||||||||||||||| ||||||| |||| ||||| |||||| 
seq2  GAGTTT-AACAACCAAGAAATGAAAGAGCTC-AGTT-CAGGT-CTTCTGG  1043

seq1  CACCACCACACCACCACAGAATATCAGTACTGGACTCACCTGCAGTTGCT  1098
       ||||||||| || |||||||| | |||||||||||||||||||| ||| 
seq2  TACCACCACA-CATCACAGAAT-TTAGTACTGGACTCACCTGCAG-TGC-  1089

seq1  TCATTCTGATGTG--CTCCC  1116
      |||||||||||||  |||||
seq2  TCATTCTGATGTGGTCTCCC  1109


seq1: chr4_9793485_9794559
seq2: B6Ng01-068M16.g_70_1137 (reverse)

seq1  CATGTGTACATGTACACACACACATACCACATGCATATGTGCACATGCAC  50
      |||||||||| || | ||| ||| ||||||||||| ||||||| ||||||
seq2  CATGTGTACAGGT-CCCAC-CACCTACCACATGCA-ATGTGCAAATGCAC  47

seq1  ACACAGGAACACACATAGAGTTCAAAGCCAGCTTGGCTACAGATCAAGAC  100
       |||||| |||| ||||||||||||||||||||||||| ||||||||   
seq2  CCACAGG-ACACCCATAGAGTTCAAAGCCAGCTTGGCT-CAGATCAAAGA  95

seq1  CCTGCA------AGCAAGCAAGCAAGCAAGCAAACAAGCAAACACAGATT  144
      ||||||      ||||||||||||||| ||||||||||||||||||||||
seq2  CCTGCAGCAAGCAGCAAGCAAGCAAGC-AGCAAACAAGCAAACACAGATT  144

seq1  CTGCCCAACTAGTCCACTGCTAAAGAATTAAAACACAAGGAAATCTATTC  194
      |||||||||||||||||| || ||||||| ||||||||||||||||||||
seq2  CTGCCCAACTAGTCCACT-CT-AAGAATT-AAACACAAGGAAATCTATTC  191

seq1  AATCAACAGTAGTTGCAAATCTAGTTGTGGATTTGGTCGATAAAAGAAGT  244
      |||||||||||| ||| |||||||||||||||||||||||||||||||||
seq2  AATCAACAGTAG-TGC-AATCTAGTTGTGGATTTGGTCGATAAAAGAAGT  239

seq1  AAGTAAAAAGATTTTTCCCTCCAGTCCAAAAAAAAAAAAAAATCAAGTCT  294
      |||||||||||||||||||||||||||  |||||||||||||||||||||
seq2  AAGTAAAAAGATTTTTCCCTCCAGTCC--AAAAAAAAAAAAATCAAGTCT  287

seq1  TCCCTAAAAGTCATTATAAGAACAGAAACCCCCAAACGCCTGCCTTTCAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAAAAGTCATTATAAGAACAGAAACCCCCAAACGCCTGCCTTTCAA  337

seq1  GGGTTCCTCTTCTAGGTCCCAACTAGACTTTTCACCTGATTTGAGTAACT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCCTCTTCTAGGTCCCAACTAGACTTTTCACCTGATTTGAGTAACT  387

seq1  TGAGTTCCACATTCTCTATCAAGAGGATAGCTAGTTTTCTCCACTGATTA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCCACATTCTCTATCAAGAGGATAGCTAGTTTTCTCCACTGATTA  437

seq1  ATGTGGTTTTTATATTTCCCAGACTCTTTTAGGGCTCTTACAGATGGTTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTTTTTATATTTCCCAGACTCTTTTAGGGCTCTTACAGATGGTTT  487

seq1  TACTGTATTGAATTAGAAAACCCTCCTATAACTCTTTAATACATCTTTTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTATTGAATTAGAAAACCCTCCTATAACTCTTTAATACATCTTTTA  537

seq1  CCTTTACTACCAAATATTCTTAACCAGAATTCTGTTTCCTTGAGCTCCTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACTACCAAATATTCTTAACCAGAATTCTGTTTCCTTGAGCTCCTT  587

seq1  TATTTTTCCCCTGGGGAAGAGCTACAAAATGACAGCTAAAGGAAACTGCC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCCCCTGGGGAAGAGCTACAAAATGACAGCTAAAGGAAACTGCC  637

seq1  CATTTCTGCTCACTTCCTGCCTAGCTCTAGGGTCTCCATTCTCAGCGCTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTGCTCACTTCCTGCCTAGCTCTAGGGTCTCCATTCTCAGCGCTC  687

seq1  ATCATGAAAACATGGTCCTGTGCTTGAGGAGTTTAAGAGCTTTTTTGTGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGAAAACATGGTCCTGTGCTTGAGGAGTTTAAGAGCTTTTTTGTGA  737

seq1  GTTACCACTGTGTGGCAGGCACTGTTCAAGGCTCTGGGAAACTTTCTGTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCACTGTGTGGCAGGCACTGTTCAAGGCTCTGGGAAACTTTCTGTG  787

seq1  TAGAAGACAAGATAAAGAAAGTTCCAACCTAAAGCTGAGTTTCCAACATT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGACAAGATAAAGAAAGTTCCAACCTAAAGCTGAGTTTCCAACATT  837

seq1  TCTCAAGCTCCCAGAAGCCACTTCTTCTACCTGAATCCTGATTGTTACAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGCTCCCAGAAGCCACTTCTTCTACCTGAATCCTGATTGTTACAG  887

seq1  CTTGTTCTTCCCACTCATGAATCCTCTCAAAGTTCCATCTGGTTCCTGCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCTTCCCACTCATGAATCCTCTCAAAGTTCCATCTGGTTCCTGCT  937

seq1  TCATTCCTTCCTTTAAAAGTTCAGTGGAGATGACAGGTCAAGGTAGTTAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCTTCCTTTAAAAGTTCAGTGGAGATGACAGGTCAAGGTAGTTAG  987

seq1  AGAAAATGGCTCTTGGGACGGCCATGTCTCCAACTGTCCTTTGAAATCTC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGGCTCTTGGGACGGCCATGTCTCCAACTGTCCTTTGAAATCTC  1037

seq1  TCAGATGTGGTTATCTCCACACTGGGAATTC  1075
      |||||||||||||||||||||||||||||||
seq2  TCAGATGTGGTTATCTCCACACTGGGAATTC  1068


| Home | SequenceCutter | Blast | Download |