BAC Information

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BAC

Clone NameB6Ng01-068O21
Chromosome4 (Build37)
Map Location 45,167,075 - 45,267,824
singlet/doubletdoublet
Overlap geneFrmpd1
Upstream geneRnf38, Melk, Pax5, 5730488B01Rik, LOC545618, Zcchc7, D4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik
Downstream geneRg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1, Shb, LOC100040140, LOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik, Tdrd7, Tmod1, BC057893, AU014645, Xpa, LOC624430
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068O21.bB6Ng01-068O21.g
ACCDH887381DH887382
length1,0821,035
definitionDH887381|Mus musculus domesticus DNA, BAC clone: B6Ng01-068O21, 5' end.DH887382|Mus musculus domesticus DNA, BAC clone: B6Ng01-068O21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,266,738 - 45,267,824)(45,167,075 - 45,168,136)
sequence
gaattccttccttcttgcaaagaatttaataatctctcccacaatccccc
tgcggagaaagctgcatgcagagccagtaggtggattcagcaatggttta
atctgcactcaaaatagttctggtttcttttctctttttcttttcctgtc
ctttcctgtgcgagggatcaaacccagggcctcattcctgttaagacaag
ggagttgccactgagttaagtagcttaagctccctctggctgaaccctta
tggttgatatctagcaatgcctgagatgaaggcagaggaagaaatttata
ggcagaactgtaagaggccatcaggtgccaagcaacagatattgaacaag
atccttgcgaatcagaagctctgagtcagaggctgggaaaaccaagagca
agtctaagagagcacagggggcggggctgtcaacacagcacagcgacaga
gtggagagtgagagagtgttcacagcaataggcaaccagtcactcagagg
atagagcaaccaagggcagagcagaagagagacacagagagcaggcattt
ccagcaacccatccctgtttctcatgctagggagggcaatcccctgagcg
ttcggctgagagctgaaacgttaaagaaaattagctggctgagaactaga
aaggaaggagctctgagaagaggaggctccttgacaagaaaggaggctga
tgatagctggcatctatacaaatacgcctttcagcctcaggactataaaa
gcacagcaggccaaaacaccgggccaagctacatgacctgacatggatta
ataggaagagtgactctgaggatttaaaaaaaaaaaaaaaaatcaattgg
ccaagcaagggatgggggactcagcctggaagctattcatttgaaaaccg
gctcagtatttcactgaccacaagtatcacccaagccaacagtgtgactg
ggccttgccagtgggaatccaaccctgagctccaccagcatttctggtgc
acaccagaagcaacccttcattcccggggcactcttgggtgagtgtgacc
ttttctgggtgccaccattgcaagtcaccgaa
gaattcagaggaccacccaggtgtctgtcctgtctcttcagcttgctttg
aggcagggtctctcgttttttcttgctgttctccgtgctccaggtgagca
ggctgtgagcttctggagaactctagctcctgctcccatcttgttgcagg
agtcttgggattgcagacaccacacagggctttctgtgggctccaaggga
atccaagttcaggccatgagtttgcgtcaagtgcctttacctgctacgcc
atatcctggtccctgactttggttttaaagaaagggcttgttgcaatttc
tagtttcatattcactgtaggatcaactttgtgatttctatagagcccag
ctgggatgtcgatggtaagacgctgatcctatacatctatctgggagaac
tgacctcttgaccttttcatccctgacctttcgtatcccaccctctggca
ggggccgttgcttcttcctcagatctgcacccatcagcgtctggcagttg
ccagcactccagtcttgcaggcagaaatttaaccttatgtttttatttgt
ggtagagttataaatgctacttttagcctaccttgcttttttttttttca
tggctagggtagtgtaaggctagttcgtgggtttggttggtttggttttc
tcaagacaaggtttccttgtgtagccctggccatcctggaactccatcta
tagaccaagttggcattggactcacagagatccacctgcttctgtctccc
aagtgctgggattaaaggtgtgagccaccaccgggccaaaggccagcttt
taaaatactgactttgagtccagggttcttactggatctactggaacaac
ccatgagattgtctgtgtagacaatcatgtcattcacaaataaaggtagt
ttctttctctcttcttcttctttcttcttcttctatcttcttctctcttc
gaagtacttttcccttcttagctatttcagaactagtgggacttgatgag
taggaaacatttttcctgttcctgactttactaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_45266738_45267824
seq2: B6Ng01-068O21.b_46_1127 (reverse)

seq1  TTCGGTGACCCTTGCAAATGGTGGCACCCAGAAAGGTCCACACTTCCACC  50
      ||||||||  ||||| |||||||||||||||||| |  ||||||  ||||
seq2  TTCGGTGA--CTTGC-AATGGTGGCACCCAGAAAAGGTCACACT--CACC  45

seq1  CAAAGAGTGCCCCGGGAATGAAGGGTTGCTTCTGGTGTGCACCAGAAATG  100
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-AAGAGTGCCCCGGGAATGAAGGGTTGCTTCTGGTGTGCACCAGAAATG  94

seq1  CTGGTGGAGCTCAGGGTTGGATTCCCACTTGGCAAGG-CCAGTCACACTG  149
      |||||||||||||||||||||||||||| |||||||| ||||||||||||
seq2  CTGGTGGAGCTCAGGGTTGGATTCCCAC-TGGCAAGGCCCAGTCACACTG  143

seq1  TTGGCTTGGGTGATACTTGTGGTCAGTGAAATACTGAGCCGGTTTTCAAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTGGGTGATACTTGTGGTCAGTGAAATACTGAGCCGGTTTTCAAA  193

seq1  TGAATAGCTTCCAGGCTGAGTCCCCCATCCCTTGCTTGGCCAATTGA-TT  248
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGAATAGCTTCCAGGCTGAGTCCCCCATCCCTTGCTTGGCCAATTGATTT  243

seq1  TTTTTTTTTTTTTTAAATCCTCAGAGTCACTCTTCCTATTAATCCATGTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTAAATCCTCAGAGTCACTCTTCCTATTAATCCATGTC  293

seq1  AGGTCATGTAGCTTGGCCCGGTGTTTTGGCCTGCTGTGCTTTTATAGTCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATGTAGCTTGGCCCGGTGTTTTGGCCTGCTGTGCTTTTATAGTCC  343

seq1  TGAGGCTGAAAGGCGTATTTGTATAGATGCCAGCTATCATCAGCCTCCTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTGAAAGGCGTATTTGTATAGATGCCAGCTATCATCAGCCTCCTT  393

seq1  TCTTGTCAAGGAGCCTCCTCTTCTCAGAGCTCCTTCCTTTCTAGTTCTCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCAAGGAGCCTCCTCTTCTCAGAGCTCCTTCCTTTCTAGTTCTCA  443

seq1  GCCAGCTAATTTTCTTTAACGTTTCAGCTCTCAGCCGAACGCTCAGGGGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTAATTTTCTTTAACGTTTCAGCTCTCAGCCGAACGCTCAGGGGA  493

seq1  TTGCCCTCCCTAGCATGAGAAACAGGGATGGGTTGCTGGAAATGCCTGCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCTCCCTAGCATGAGAAACAGGGATGGGTTGCTGGAAATGCCTGCT  543

seq1  CTCTGTGTCTCTCTTCTGCTCTGCCCTTGGTTGCTCTATCCTCTGAGTGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTCTCTCTTCTGCTCTGCCCTTGGTTGCTCTATCCTCTGAGTGA  593

seq1  CTGGTTGCCTATTGCTGTGAACACTCTCTCACTCTCCACTCTGTCGCTGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTGCCTATTGCTGTGAACACTCTCTCACTCTCCACTCTGTCGCTGT  643

seq1  GCTGTGTTGACAGCCCCGCCCCCTGTGCTCTCTTAGACTTGCTCTTGGTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTTGACAGCCCCGCCCCCTGTGCTCTCTTAGACTTGCTCTTGGTT  693

seq1  TTCCCAGCCTCTGACTCAGAGCTTCTGATTCGCAAGGATCTTGTTCAATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGCCTCTGACTCAGAGCTTCTGATTCGCAAGGATCTTGTTCAATA  743

seq1  TCTGTTGCTTGGCACCTGATGGCCTCTTACAGTTCTGCCTATAAATTTCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGCTTGGCACCTGATGGCCTCTTACAGTTCTGCCTATAAATTTCT  793

seq1  TCCTCTGCCTTCATCTCAGGCATTGCTAGATATCAACCATAAGGGTTCAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGCCTTCATCTCAGGCATTGCTAGATATCAACCATAAGGGTTCAG  843

seq1  CCAGAGGGAGCTTAAGCTACTTAACTCAGTGGCAACTCCCTTGTCTTAAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGGAGCTTAAGCTACTTAACTCAGTGGCAACTCCCTTGTCTTAAC  893

seq1  AGGAATGAGGCCCTGGGTTTGATCCCTCGCACAGGAAAGGACAGGAAAAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGAGGCCCTGGGTTTGATCCCTCGCACAGGAAAGGACAGGAAAAG  943

seq1  AAAAAGAGAAAAGAAACCAGAACTATTTTGAGTGCAGATTAAACCATTGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAGAAAAGAAACCAGAACTATTTTGAGTGCAGATTAAACCATTGC  993

seq1  TGAATCCACCTACTGGCTCTGCATGCAGCTTTCTCCGCAGGGGGATTGTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCCACCTACTGGCTCTGCATGCAGCTTTCTCCGCAGGGGGATTGTG  1043

seq1  GGAGAGATTATTAAATTCTTTGCAAGAAGGAAGGAATTC  1087
      |||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGATTATTAAATTCTTTGCAAGAAGGAAGGAATTC  1082

seq1: chr4_45167075_45168136
seq2: B6Ng01-068O21.g_68_1102

seq1  GAATTCAGAGGACCACCCAGGTGTCTGTCCTGTCTCTTCAGCTTGCTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGGACCACCCAGGTGTCTGTCCTGTCTCTTCAGCTTGCTTTG  50

seq1  AGGCAGGGTCTCTCGTTTTTTCTTGCTGTTCTCCGTGCTCCAGGTGAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGGTCTCTCGTTTTTTCTTGCTGTTCTCCGTGCTCCAGGTGAGCA  100

seq1  GGCTGTGAGCTTCTGGAGAACTCTAGCTCCTGCTCCCATCTTGTTGCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGAGCTTCTGGAGAACTCTAGCTCCTGCTCCCATCTTGTTGCAGG  150

seq1  AGTCTTGGGATTGCAGACACCACACAGGGCTTTCTGTGGGCTCCAAGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGGGATTGCAGACACCACACAGGGCTTTCTGTGGGCTCCAAGGGA  200

seq1  ATCCAAGTTCAGGCCATGAGTTTGCGTCAAGTGCCTTTACCTGCTACGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGTTCAGGCCATGAGTTTGCGTCAAGTGCCTTTACCTGCTACGCC  250

seq1  ATATCCTGGTCCCTGACTTTGGTTTTAAAGAAAGGGCTTGTTGCAATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTGGTCCCTGACTTTGGTTTTAAAGAAAGGGCTTGTTGCAATTTC  300

seq1  TAGTTTCATATTCACTGTAGGATCAACTTTGTGATTTCTATAGAGCCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCATATTCACTGTAGGATCAACTTTGTGATTTCTATAGAGCCCAG  350

seq1  CTGGGATGTCGATGGTAAGACGCTGATCCTATACATCTATCTGGGAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATGTCGATGGTAAGACGCTGATCCTATACATCTATCTGGGAGAAC  400

seq1  TGACCTCTTGACCTTTTCATCCCTGACCTTTCGTATCCCACCCTCTGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCTTGACCTTTTCATCCCTGACCTTTCGTATCCCACCCTCTGGCA  450

seq1  GGGGCCGTTGCTTCTTCCTCAGATCTGCACCCATCAGCGTCTGGCAGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCGTTGCTTCTTCCTCAGATCTGCACCCATCAGCGTCTGGCAGTTG  500

seq1  CCAGCACTCCAGTCTTGCAGGCAGAAATTTAACCTTATGTTTTTATTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTCCAGTCTTGCAGGCAGAAATTTAACCTTATGTTTTTATTTGT  550

seq1  GGTAGAGTTATAAATGCTACTTTTAGCCTACCTTGCTTTTTTTTTTTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGTTATAAATGCTACTTTTAGCCTACCTTGCTTTTTTTTTTTTCA  600

seq1  TGGCTAGGGTAGTGTAAGGCTAGTTCGTGGGTTTGGTTGGTTTGGTTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAGGGTAGTGTAAGGCTAGTTCGTGGGTTTGGTTGGTTTGGTTTTC  650

seq1  TCAAGACAAGGTTTCCTTGTGTAGCCCTGGCCATCCTGGAACTCCATCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGACAAGGTTTCCTTGTGTAGCCCTGGCCATCCTGGAACTCCATCTA  700

seq1  TAGACCAAGTTGGCATTGGACTCACAGAGATCCACCTGCTTCTGCCTCCC  750
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TAGACCAAGTTGGCATTGGACTCACAGAGATCCACCTGCTTCTGTCTCCC  750

seq1  AAGTGCTGGGATTAAAGGTGTGAGCCACCACCGGGCCAAAGGCCAGCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTGGGATTAAAGGTGTGAGCCACCACCGGGCCAAAGGCCAGCTTT  800

seq1  TAAAATACTGACTTTGAGTCCAGGGTTCTTACTGGATCTACTGGAACAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATACTGACTTTGAGTCCAGGGTTCTTACTGGATCTACTGGAACAAC  850

seq1  CCATGAGATTGTCTGTGTAGACAATCATGTCATTCACAAATAAAGGTAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCATGAGATTGTCTGTGTAGACAATCATGTCATTCACAAATAAAGGTAG-  899

seq1  TTTCTTTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  950
      |||||||||||| |||||   ||||||| |||||   |||| ||||   |
seq2  TTTCTTTCTCTC-TTCTT--CTTCTTTC-TTCTT--CTTCTATCTT--CT  941

seq1  TCTTTCTTCTTTCTGATGTTACTTTTTCTCCTTTTCTTAGCTAATTTCAA  1000
      ||| |||||     || | |||||||    |  ||||||||| ||||| |
seq2  TCTCTCTTC-----GAAG-TACTTTT----CCCTTCTTAGCT-ATTTC-A  979

seq1  GAACTAGTGGGACTTTGAGTGAAGTAGTGAAAACATTTTCCCTTGTTCCT  1050
      ||||||||||||| |||| || ||||  | ||||||||| || |||||||
seq2  GAACTAGTGGGAC-TTGA-TG-AGTA--GGAAACATTTTTCC-TGTTCCT  1023

seq1  GACTTTACTAAG  1062
      ||||||||||||
seq2  GACTTTACTAAG  1035