BAC Information

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BAC

Clone NameB6Ng01-069B13
Chromosome4 (Build37)
Map Location 115,043,049 - 115,185,052
singlet/doubletdoublet
Overlap geneCyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14
Upstream geneLOC666048, Foxd2, LOC100040736, Foxe3, Cmpk, Stil, Tal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12, LOC546842
Downstream geneCyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1, Faah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3, Mast2, LOC631400, Ipp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069B13.bB6Ng01-069B13.g
ACCDH887502DH887503
length9231,026
definitionDH887502|Mus musculus domesticus DNA, BAC clone: B6Ng01-069B13, 5' end.DH887503|Mus musculus domesticus DNA, BAC clone: B6Ng01-069B13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,043,049 - 115,044,004)(115,184,020 - 115,185,052)
sequence
gaattcaaggctccattaataagagcaactgttccaaaaggtttcttcct
ttctattgtcacaaatgaggtaaaagaaagagagagagagagagagagag
agagagagagagagagagagagagagagagaaaagaaaagaaaagaaaag
aaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagataaa
gtgagttccagaggatgctcttgggacagggatgggtacaaaggaacatt
ggaggtgttccaatatgatccttttctcttataaagaggcaacaaagcac
cctcagatcctatcagtttgacccagactttaaaaaagaacatgtttgat
gtatttctttacttgagtcttgcctaaagttagactaaaggataaaaaag
tgaccgctggtgggaaatacaaatcataatatcataatatcctcttattt
gaccttcttgtagaagggaacacactcacttgttaaacttccaggtggtc
tgtctccacttatagacacactaatgtggatataggcttccagacagttg
gttctcaccctcaaatgtagccaggtggatctcaagttaatacttaagta
agatatatacttttcttagttgatccaccttgatcatgagtactacacca
tgacattatagtttaaggatacaaattaagaggataacccttcatcaagt
gtttgtatctgatagagctctaatggaggaactggattcagtctattgtc
aatcctattccaagcatggcccagcagataagatgcacctgataaagctc
tgttcatagcagccttatttataatagccagaagttggaagaccaagatg
ccctcaacatagatgatacagaaatgtgtacattacacatgagtactact
cagctattaagactgattatgaa
gaattcatcccttggtaaagagccttaggcaacaaatgagaaggggaaaa
ttagctttatctggggatgatacccttgataggtcaagccatcagcccta
aatgaatctgcataccaaatatataatgaaagaatatcttgaatttgaca
gagactgagagatgggacatgggaggaattgaatagggagaaggagttat
ggaaatgatataagtacagtactcatgtataaaattatcaaaatgatgag
aaaaaaattaaaaaaaagaaaaaacaactccaaggtgttttttttccccc
cgtagggccacctatgtggtcagagtgagcatttattgagtaagttacag
gatcaagtattggataaaaagtttcacatattttcttgcaaaatactaca
tataataaattatttgttttcacaggatcatctcattggttagaggtaca
gactagattataacccaggtagtctgtgggactttgtggctagctatgga
tgtaaagaagatggtggttagactgagcttctagtccatatggcagccca
taaacttctcagaagccattccatgtttcccttaatattcccactgagca
gaagatgtcagagatgatctgtgttggcacaaagttttcaggaaactctc
gtagggtgtatggtcaacctgtgactagatgctggctttgttgtcttctc
aatgattcccatgagtgacttgggaagtgtataagtcaaatttacaagaa
acaatgctatgtactcacatgtaaattatcagcataacttaaaaaaatgt
cttggtagcatcaagatttattaacaaaacaagtttcccatttaactgct
gctcagacagtttcaagtaatgatcctgagagttgtgacttgaatatata
tctggacactttctgcagatggataagaacctactaatgctcattatgat
atcaatatattgcctggtttgcaaaggtgagtgagctgataaactatttt
tgggggtggggagtactggtattgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_115043049_115044004
seq2: B6Ng01-069B13.b_46_968

seq1  GAATTCAAGGCTCCATTAATAAGAGCAACTGTTCCAAAAGGTTTCTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCTCCATTAATAAGAGCAACTGTTCCAAAAGGTTTCTTCCT  50

seq1  TTCTATTGTCACAAATGAGGTAAAAGAAAGAGAGAGAGAGAGAGAGAGAG  100
      ||||||||||||||||||||||||||||    ||||||||||||||||||
seq2  TTCTATTGTCACAAATGAGGTAAAAGAA----AGAGAGAGAGAGAGAGAG  96

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGAAAAGAAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGAAAAGAAAAGA  146

seq1  AAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGA  196

seq1  TAAAGTGAGTTCCAGAGGATGCTCTTGGGACAGGGATGGGTACAAAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTGAGTTCCAGAGGATGCTCTTGGGACAGGGATGGGTACAAAGGAA  246

seq1  CATTGGAGGTGTTCCAATATGATCCTTTTCTCTTATAAAGAGGCAACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGAGGTGTTCCAATATGATCCTTTTCTCTTATAAAGAGGCAACAAA  296

seq1  GCACCCTCAGATCCTATCAGTTTGACCCAGACTTTAAAAAAGAACATGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCTCAGATCCTATCAGTTTGACCCAGACTTTAAAAAAGAACATGTT  346

seq1  TGATGTATTTCTTTACTTGAGTCTTGCCTAAAGTTAGACTAAAGGATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTATTTCTTTACTTGAGTCTTGCCTAAAGTTAGACTAAAGGATAAA  396

seq1  AAAGTGACCGCTGGTGGGAAATACAAATCATAATATCATAATATCCTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGACCGCTGGTGGGAAATACAAATCATAATATCATAATATCCTCTT  446

seq1  ATTTGACCTTCTTGTAGAAGGGAACACACTCACTTGTTAAACTTCCAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACCTTCTTGTAGAAGGGAACACACTCACTTGTTAAACTTCCAGGT  496

seq1  GGTCTGTCTCCACTTATAGACACACTAATGTGGATATAGGCTTCCAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGTCTCCACTTATAGACACACTAATGTGGATATAGGCTTCCAGACA  546

seq1  GTTGGTTCTCACCCTCAAATGTAGCCAGGGTGGATCTCAAGTTAAATACT  600
      ||||||||||||||||||||||||||| ||||||||||||||| ||||||
seq2  GTTGGTTCTCACCCTCAAATGTAGCCA-GGTGGATCTCAAGTT-AATACT  594

seq1  TAAGTAAAGATATATACTTTTCTTAGTTTGATCCACCTTGATCATGAGTA  650
      ||||| |||||||||||||||||||| |||||||||||||||||||||||
seq2  TAAGT-AAGATATATACTTTTCTTAG-TTGATCCACCTTGATCATGAGTA  642

seq1  CTACACCATGACATTATAAAGTTTAAGGATACAAATTTTAAGAGGATAAC  700
      |||||||||||||||||  ||||||||||||||||  |||||||||||||
seq2  CTACACCATGACATTAT--AGTTTAAGGATACAAA--TTAAGAGGATAAC  688

seq1  CCTTCAAAATCAAGTGTTTGTATCTGATAGAGCTCTAATGGAGGAACTGG  750
      |||||   ||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTC---ATCAAGTGTTTGTATCTGATAGAGCTCTAATGGAGGAACTGG  735

seq1  ATTCAGTCTATTGTCAATCCTATTCCAAAGCATGGCCCAGCAGATAAGAT  800
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATTCAGTCTATTGTCAATCCTATTCC-AAGCATGGCCCAGCAGATAAGAT  784

seq1  GCACCTGGATAAAGCTCTGTTCATAGCAGCCTTATTTATAATAGCCAGAA  850
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCT-GATAAAGCTCTGTTCATAGCAGCCTTATTTATAATAGCCAGAA  833

seq1  GTTGGAAAGAACCAAGATGCCCCTCAACATAAGAATGGATACAGAAAATG  900
      |||||||   ||||||||| |||||||||| |||   ||||||| |||||
seq2  GTTGGAA--GACCAAGATG-CCCTCAACAT-AGA--TGATACAG-AAATG  876

seq1  TGGTACATTTACACAATGGAGTACTACTCAGCTATTTAAAGGACTGAATT  950
      | ||||| |||||||   ||||||||||||||||||   | ||||||  |
seq2  T-GTACA-TTACACA--TGAGTACTACTCAGCTATT---AAGACTGA--T  917

seq1  TATGAA  956
      ||||||
seq2  TATGAA  923

seq1: chr4_115184020_115185052
seq2: B6Ng01-069B13.g_67_1091 (reverse)

seq1  TCAATACCCAGTACTTCCCACCCCCAAAAATAGTTTACTCAGCTCCACTT  50
      |||||| |||||||| ||||||||||||||||||||| |||||| ||| |
seq2  TCAATA-CCAGTACTCCCCACCCCCAAAAATAGTTTA-TCAGCT-CAC-T  46

seq1  CACCTTTTGCCAAACCAGACAATATATTGGATATCATTAATGGGCATTAG  100
      |||||||   |||||||| ||||||||| ||||||| ||||| |||||||
seq2  CACCTTT--GCAAACCAGGCAATATATT-GATATCA-TAATGAGCATTAG  92

seq1  TAGGTTTCTTATCCATTCTGCAGAAAGTGTCCAGATATATATTTCAAGTC  150
      |||| |||||||||| ||||||||||||||||||||||||| ||||||||
seq2  TAGG-TTCTTATCCA-TCTGCAGAAAGTGTCCAGATATATA-TTCAAGTC  139

seq1  ACAACTCTCAGGATCATTACTTG-AACTGTCTGGGCAGCAGTTAAATGGG  199
      ||||||||||||||||||||||| ||||||||| ||||||||||||||||
seq2  ACAACTCTCAGGATCATTACTTGAAACTGTCTGAGCAGCAGTTAAATGGG  189

seq1  AAACTTGTTTTGTTAATAAATCTTGATGCTACCAAGACA-TTTTTTAAGT  248
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAACTTGTTTTGTTAATAAATCTTGATGCTACCAAGACATTTTTTTAAGT  239

seq1  TATGCTGATAATTTACATGTGAGTACATAGCATTGTTTCTTGTAAATTTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGATAATTTACATGTGAGTACATAGCATTGTTTCTTGTAAATTTG  289

seq1  ACTTATACACTT-CCAAGTCACTCATGGGAATCATTGAGAAGACAACAAA  347
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACTTATACACTTCCCAAGTCACTCATGGGAATCATTGAGAAGACAACAAA  339

seq1  GCCAGCATCTAGTCACAGGTTGACCATACACCCTACGAGAGTTTCCTGAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCATCTAGTCACAGGTTGACCATACACCCTACGAGAGTTTCCTGAA  389

seq1  AACTTTGTGCCAACACAGATCATCTCTGACATCTTCTGCTCAGTGGGAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGTGCCAACACAGATCATCTCTGACATCTTCTGCTCAGTGGGAAT  439

seq1  ATTAAGGGAAACATGGAATGGCTTCTGAGAAGTTTATGGGCTGCCATATG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGGAAACATGGAATGGCTTCTGAGAAGTTTATGGGCTGCCATATG  489

seq1  GACTAGAAGCTCAGTCTAACCACCATCTTCTTTACATCCATAGCTAGCCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGAAGCTCAGTCTAACCACCATCTTCTTTACATCCATAGCTAGCCA  539

seq1  CAAAGTCCCACAGACTACCTGGGTTATAATCTAGTCTGTACCTCTAACCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCCCACAGACTACCTGGGTTATAATCTAGTCTGTACCTCTAACCA  589

seq1  ATGAGATGATCCTGTGAAAACAAATAATTTATTATATGTAGTATTTTGCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATGATCCTGTGAAAACAAATAATTTATTATATGTAGTATTTTGCA  639

seq1  AGAAAATATGTGAAACTTTTTATCCAATACTTGATCCTGTAACTTACTCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATATGTGAAACTTTTTATCCAATACTTGATCCTGTAACTTACTCA  689

seq1  ATAAATGCTCACTCTGACCACATAGGTGGCCCTACGGGGGGAAAAAAAAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGCTCACTCTGACCACATAGGTGGCCCTACGGGGGGAAAAAAAAC  739

seq1  ACCTTGGAGTTGTTTTTTCTTTTTTTTAATTTTTTTCTCATCATTTTGAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGAGTTGTTTTTTCTTTTTTTTAATTTTTTTCTCATCATTTTGAT  789

seq1  AATTTTATACATGAGTACTGTACTTATATCATTTCCATAACTCCTTCTCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTATACATGAGTACTGTACTTATATCATTTCCATAACTCCTTCTCC  839

seq1  CTATTCAATTCCTCCCATGTCCCATCTCTCAGTCTCTGTCAAATTCAAGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCAATTCCTCCCATGTCCCATCTCTCAGTCTCTGTCAAATTCAAGA  889

seq1  TATTCTTTCATTATATATTTGGTATGCAGATTCATTTAGGGCTGATGGCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTTCATTATATATTTGGTATGCAGATTCATTTAGGGCTGATGGCT  939

seq1  TGACCTATCAAGGGTATCATCCCCAGATAAAGCTAATTTTCCCCTTCTCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTATCAAGGGTATCATCCCCAGATAAAGCTAATTTTCCCCTTCTCA  989

seq1  TTTGTTGCCTAAGGCTCTTTACCAAGGGATGAATTC  1033
      ||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGCCTAAGGCTCTTTACCAAGGGATGAATTC  1025