BAC Information

Click to search

BAC

Clone NameB6Ng01-069C04
Chromosome1 (Build37)4 (Build37)
Map Location 59,701,431 - 59,701,774145,370,319 - 145,371,319
singlet/doubletsingletsinglet
Overlap geneSumo1
Upstream geneAls2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2, Als2cr7, Fzd7, Gm973
Downstream geneLOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf, Nbeal1, Cyp20a1, Abi2, Raph1, LOC100043027, LOC100042533
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069C04.bB6Ng01-069C04.g
ACCDH887530DH887531
length1,220996
definitionDH887530|Mus musculus domesticus DNA, BAC clone: B6Ng01-069C04, 5' end.DH887531|Mus musculus domesticus DNA, BAC clone: B6Ng01-069C04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(59,701,431 - 59,701,774)(145,370,319 - 145,371,319)
sequence
gaattctaaagtctcttttattctttctatcagtagctggtcaatttcat
tatcaccttgtgccagagggcctggcaaacctgtatgcgatcttatgagt
gatttatatagtgaatgactcctatttcttatcaattgtggtagctgaaa
aaatagtgaagtcaattcagattcctcctgaataagatcaacagtctgta
ttggaaaaacaaccctttctgcatattgagagtcagttactatattaaga
gactctagagaatctgacaacactgggagtattgcacataattcagatat
ttgagctgatttataaggacattcagtgacctacaccttctgatttatat
cctgcctttcctgatttattagtctcagcataacatgtaggggctccaga
taatggagtttcctttattttatgagggagaatccaagtagttcttttta
tgaaatgaaatcatttgcttttatggtatccatcactaatctctccaaga
agttactgcatgttctttaccaagattcaccttgtacccctaaggaggca
atctctgcattagtaaaaggtaccactatttcaggtgggtccattccaac
taattgtcaaagtctcatttttttctttttagtataaattcaaagacctt
ttccatgtagggatttcttactctgtttacgtgctaaaatcatccattct
ttttttttaaattcacatatttgtttgtttgtttgtttgttttgttttgt
tttgtttttgagcctgtttccctgtatagttagtgctggctttccaggaa
ctcactgtatagatcaggctggcctcaaactcagaaatctgcctgtttct
gtgtcccaagtgctgggatcaaaggcatgtgccaccactgcccagcaaat
attcattctaatttatcttccctctgcatgggaattccttgaaggaaatg
agtagaagttaagatactaagatgcagtcatctttggataaatactgtag
ttgtgtaaatcccttgctcctgtgtcttctctaggcacgtgattgctcat
cttcatcactcttctcatctcactatctcttgtactggtgcctctcttcc
ctctcttcttctaaactcagccccggttctcctgcatacaaggctcagct
attgaccaattgacagtaatgggagtcataattcagatggtaactcctct
gcgactccttaggatagcag
gaattcttctaagcccacctacttatgggccttttaattaattagcttcc
cacttcttcacagcaatgtttggtgttttgaatttttgcttgcttgcttg
cttgcttgcttgcttgcttgcttgcttgcttgcttgcttgcttgcttgct
tgcttgcttgcttgcttgcttattcgtttctttgcttttaatttgtcttt
ttcttaaactcatctaatcgtgcaggaatcccacactccccatcaggaac
cactcctccaactctgttgcaggctgccttccacacaacttcccaggacc
tactctgcaaagcttcttcacaaagttgctgccagactagaccagagctg
gatgtagtaggacactgcacctgggttctgaacccttcagattcaatgga
tcctgtctaacttctcatattgtgcgtgtagccctctgggctataaatgc
acaaaattaagcagtccctttgaattctgatgctcagaacagatacccaa
aacaaacaaaaacgtagataaaatgtccttggctcaaaccacaaaccata
gaggtatcttataaggagcacaatttatgtgatatccaagacaaagaatg
gaaaacccacagtcatgatcaaggacattaaagtttgtaaacctgtgaat
ccactcagacaggaacaaaatgaatcttggtcaagaaaataacaccagat
gcctgaaggaaataaggacaatataaaatattaaaattatgttcaatagg
tgcttagaaatgccacacacaaaaaaatcctgaagagaaaatgcagtgag
gcaaataaaaatgatacatagagaacctgtgggagacagattatcagact
taagaaaaagtagaggaggtggatgccttcaatcaaagaaatggtgaatt
aaaatgatgttaagtcagggaaaatattatttactgcttgaaggatgagg
caataagagaactcctttggaaactgtcctgatctttgtcaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_59701431_59701774
seq2: B6Ng01-069C04.b_902_1263 (reverse)

seq1  CTGCTATCCTAAGGAG----ATAAAAGAAACATTGT---TTAT--CT-AC  40
      ||||||||||||||||    | |  ||  ||  | |   ||||  ||  |
seq2  CTGCTATCCTAAGGAGTCGCAGAGGAGTTACCATCTGAATTATGACTCCC  50

seq1  ACTACTTAGTTAACTTGAACCAAATTATTTAATTTTGCCTTGT---CAAT  87
      | ||||  || || | |   |||      ||  |  |||||||   ||  
seq2  ATTACT--GTCAATTGG--TCAA------TAGCTGAGCCTTGTATGCAGG  90

seq1  TAAA---------GTTTTCCACCAAAATATTCTTTTTAG----CATTCC-  123
        ||           |||  |  || | |        ||    || | | 
seq2  AGAACCGGGGCTGAGTTTAGAAGAAGAGAGGGAAGAGAGGCACCAGTACA  140

seq1  -TAACTAGT---TTCAGTACAGCAATCTA-ATCAACTTCCAAGTAACTTT  168
        |  ||||    | || | ||  ||  | || | |   || ||  |  |
seq2  AGAGATAGTGAGATGAGAAGAGTGATGAAGATGAGCAATCACGTGCC--T  188

seq1  TTAGGCAACCCATTA--AAAAAATTCGTAAAACAGATGTTTTGGTATCAA  216
        ||   || ||  |  ||   |||   | |||    || ||  |||| |
seq2  AGAGAAGACACAGGAGCAAGGGATTTACACAACTACAGTATT--TATCCA  236

seq1  AATTATTAATATAAATTTGTCTATCAA---AGAATGCATTCCTTTATGAC  263
      ||  || | |  |  || || | | ||     | |   |||||| | |  
seq2  AA-GATGACTGCATCTTAGTATCTTAACTTCTACTCATTTCCTTCAAG--  283

seq1  AGCATATCCATCAAAATACTGTAAAATAAAAAAGAACCATCA--CAGTGA  311
       | ||  ||||  | |    | || |||||  ||||  |  |     || 
seq2  -GAATTCCCATGCAGA---GGGAAGATAAATTAGAATGAATATTTGCTGG  329

seq1  GCAGTGGTGGCACACGCCTTTAATCCCAGCACT  344
      |||||||||||||| |||||| |||||||||||
seq2  GCAGTGGTGGCACATGCCTTTGATCCCAGCACT  362

seq1: chr4_145370319_145371319
seq2: B6Ng01-069C04.g_68_1063 (reverse)

seq1  TTTTTTGACAAAGATCAGGACAGTTTTCCAAAGGAGTTTCTCTTTATTGC  50
      ||||||||||||||||||||||| |||||||||||| ||||| |||||||
seq2  TTTTTTGACAAAGATCAGGACAG-TTTCCAAAGGAG-TTCTC-TTATTGC  47

seq1  CTCATCCTTCAAGCAGTAAATAATATTGTCCCTTGACCTAACATCATTTT  100
      ||||||||||||||||||||||||||| |||| |||| ||||||||||||
seq2  CTCATCCTTCAAGCAGTAAATAATATTTTCCC-TGACTTAACATCATTTT  96

seq1  AATTCACCATTTTCTTTGATTG-AGGCATCCACCTCCTCTACTTTTTCTT  149
      ||||||||| |||||||||||| ||||||||||||||||||||||||| |
seq2  AATTCACCA-TTTCTTTGATTGAAGGCATCCACCTCCTCTACTTTTTC-T  144

seq1  TAAGTCTGATAATCTGTCTCCCACAGGTTCTCTATGTATCATTTTTATTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCTGATAATCTGTCTCCCACAGGTTCTCTATGTATCATTTTTATTT  194

seq1  GCCTCACTGCATTTTCTCTTCAGGATTTTTTTGTGTGTGGCATTTCTAAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCACTGCATTTTCTCTTCAGGATTTTTTTGTGTGTGGCATTTCTAAG  244

seq1  CACCTATTGAACATAATTTTAATATTTTATATTGTCCTTATTTCCTTCAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTATTGAACATAATTTTAATATTTTATATTGTCCTTATTTCCTTCAG  294

seq1  GCATCTGGTGTTATTTTCTTGACCAAGATTCATTTTGTTCCTGTCTGAGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGGTGTTATTTTCTTGACCAAGATTCATTTTGTTCCTGTCTGAGT  344

seq1  GGATTCACAGGTTTACAAACTTTAATGTCCTTGATCATGACTGTGGGTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCACAGGTTTACAAACTTTAATGTCCTTGATCATGACTGTGGGTTT  394

seq1  TCCATTCTTTGTCTTGGATATCACATAAATTGTGCTCCTTATAAGATACC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCTTTGTCTTGGATATCACATAAATTGTGCTCCTTATAAGATACC  444

seq1  TCTATGGTTTGTGGTTTGAGCCAAGGACATTTTATCTACGTTTTTGTTTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGGTTTGTGGTTTGAGCCAAGGACATTTTATCTACGTTTTTGTTTG  494

seq1  TTTTGGGTATCTGTTCTGAGCATCAGAATTCAAAGGGACTGCTTAATTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGTATCTGTTCTGAGCATCAGAATTCAAAGGGACTGCTTAATTTT  544

seq1  GTGCATTTATAGCCCAGAGGGCTACACGCACAATATGAGAAGTTAGACAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATTTATAGCCCAGAGGGCTACACGCACAATATGAGAAGTTAGACAG  594

seq1  GATCCATTGAATCTGAAGGGTTCAGAACCCAGGTGCAGTGTCCTACTACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCATTGAATCTGAAGGGTTCAGAACCCAGGTGCAGTGTCCTACTACA  644

seq1  TCCAGCTCTGGTCTAGTCTGGCAGCAACTTTGTGAAGAAGCTTTGCAGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTCTGGTCTAGTCTGGCAGCAACTTTGTGAAGAAGCTTTGCAGAG  694

seq1  TAGGTCCTGGGAAGTTGTGTGGAAGGCAGCCTGCAACAGAGTTGGAGGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCCTGGGAAGTTGTGTGGAAGGCAGCCTGCAACAGAGTTGGAGGAG  744

seq1  TGGTTCCTGATGGGGAGTGTGGGATTCCTGCACGATTAGATGAGTTTAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCCTGATGGGGAGTGTGGGATTCCTGCACGATTAGATGAGTTTAAG  794

seq1  AAAAAGACAAATTAAAAGCAAAGAAACGAATAAGCAAGCAAGCAAGCAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGACAAATTAAAAGCAAAGAAACGAATAAGCAAGCAAGCAAGCAAG  844

seq1  CAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCA  894

seq1  AGCAAGCAAGCAAGCAAAAATTCAAAACACCAAACATTGCTGTGAAGAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCAAGCAAGCAAAAATTCAAAACACCAAACATTGCTGTGAAGAAG  944

seq1  TGGGAAGCTAATTAATTAAAAGGCCCATAAGTAGGTGGGCTTAGAAGAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGCTAATTAATTAAAAGGCCCATAAGTAGGTGGGCTTAGAAGAAT  994

seq1  TC  1001
      ||
seq2  TC  996