BAC Information

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BAC

Clone NameB6Ng01-069G24
Chromosome4 (Build37)
Map Location 115,739,969 - 115,878,318
singlet/doubletdoublet
Overlap geneUqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748
Upstream geneTal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1, Faah, Nsun4
Downstream genePik3r3, Mast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069G24.bB6Ng01-069G24.g
ACCDH887748DH887749
length1,161654
definitionDH887748|Mus musculus domesticus DNA, BAC clone: B6Ng01-069G24, 5' end.DH887749|Mus musculus domesticus DNA, BAC clone: B6Ng01-069G24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,877,151 - 115,878,318)(115,739,969 - 115,740,622)
sequence
gaattcaaggctagcctggtctacagaatgagttccagaataggtagggc
tacacagagaaaccctgtctgaaaaaaactagagagagacagacagacac
agacatagagactcagagaaagacagagacagacagaaggagagagagag
agagagagagagagagagagagagagagagagagagagatccgggggaag
agcccatgaagttcttggaagcaaacagaggctttgtaagcaggtactaa
ggatggtctacaagtgagaggcaaggatttggggtaaataatttattccc
tttgcccccatgggtttctcatcctaaggagagaagttggcacagaaaag
ggctcaagcaagaccctttagacacagggtccaaaccagagctgctactt
tttcagcactaatagaaactgtttatataaatatttatataaattatgat
ccaactagattctgttacttgcagctcaagaatcccaaaggcccctgaca
gttttactgtctgttccttggtgggctagagtggtgactggtacaagccc
taatgcctaccaaatgtgccagaaacaaagaggtagtagcttttgctgta
agttctgccatccctggaaaattattttagattactcattgtgattttac
tctcccaacatgtatatatatatacatcccatatagtatgtatactatat
ctctaattagagattttgagcttagtagcccaaatcctaagatattacct
tatttctgaaactatattcaatatcatatcagatttgcctctcatttggc
ttaacattactccaaaatgagaacagtgttcagctattaggcaccaaaga
gtgtaaaatgtcctctataatctcatcagtcaggtcttggagctgtctcc
ctcggaagaattctggtccttttcttggaaagcctttgttgtttctctgg
ggatggtggacatacccttgctgtgagttctgtctatcactcctccatcc
aactccaattcaaagactgagtaataaaatctgttccggagaagtgcagt
caatgcccccatgaacagaaatctaaaacagaacggaacttcttgtggac
ctgctgacagcttgcatctaaaggagctggaaaggtggcctagtgatata
catcagggcgc
gaattcctttccttcatgaacacagagctggctgccttcacaaagaacca
gaaggatcctggtgtccttgaccgcatgatgaagaagctggacctcaact
gtgacgggcagctagatttccaagagtttctcaacctcattggcagctta
gctatagcgtgccatgattctttcatccaaacttcccagaagtgaatcta
atcctctcagttcccatccaaccaccaagtcatcacctcccccgacccca
tccacacctgcactgagcccagcacacctaccacaacatgtatcccacgc
ctgctggcgaaaataaaacaatgccatttatttaaatgtaaaaaaaaaga
gagagaaaataatgtcatcacttagctttaatgtcacagggcacaggtcc
ttcctggcctgaacagtagagctcctgtcttgaccctcattcttcagcat
gttatccatacgcaggccctaggaactcccatggggtacctgactgtcct
gtctgcaactctgaagtttttttttatcgtttacttcttttagaagttgc
atgttggggctagagatatggctcataggttaagagtaccaactgctctt
tcagaggtcctgagttcaattcccatcaaccatatagtggctcacaacca
ttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_115877151_115878318
seq2: B6Ng01-069G24.b_50_1210 (reverse)

seq1  GCGCCATGATG--TATCACTAGACACACTCTCAGGCTCCTTAAGAGTCAA  48
      ||||| |||||  ||||||||| |   || ||  ||||||| |||  |||
seq2  GCGCCCTGATGTATATCACTAGGCCACCTTTCCAGCTCCTTTAGATGCAA  50

seq1  GCTGTCAGGCAGGTCCAGCAGGAAGTTCCTGTCTGTCTTAGATATCATGT  98
      ||||||| ||||||||| || ||||||||  ||||| |||||| || |||
seq2  GCTGTCA-GCAGGTCCA-CAAGAAGTTCCGTTCTGTTTTAGATTTC-TGT  97

seq1  TCATGGGTGGCATTTGACTGCAC-TCTCCAGAACAGATTATTATTACTCA  147
      ||||||| |||| |||||||||| ||||| ||||||||| ||||||||||
seq2  TCATGGG-GGCA-TTGACTGCACTTCTCCGGAACAGATT-TTATTACTCA  144

seq1  GTCTATGAATGTGAAGTTGGATGGAGGAGTGATAGACAGAACTCACAGCA  197
      |||| ||||| || ||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGAAT-TGGAGTTGGATGGAGGAGTGATAGACAGAACTCACAGCA  193

seq1  AGGGTATGTCCACCATCCCCAGAGAAAACAACAAAGGCTTTCCAAGGAAA  247
      |||||||||||||||||||||||| |||||||||||||||||||| ||||
seq2  AGGGTATGTCCACCATCCCCAGAG-AAACAACAAAGGCTTTCCAA-GAAA  241

seq1  GGGACCAGAATTTCTTCCGAGGGAGACAGCTCCAAGACCTGACTGATGAG  297
       ||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGGACCAGAA-TTCTTCCGAGGGAGACAGCTCCAAGACCTGACTGATGAG  290

seq1  ATTATAGAGGACATTTTACACTCTTTGGTGCCTAATAGCTGAACACTGTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGAGGACATTTTACACTCTTTGGTGCCTAATAGCTGAACACTGTT  340

seq1  CTCATTTTGGAGTAATGTTAAGCCAAATGAGAGGCAAATCTGATATGATA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTTGGAGTAATGTTAAGCCAAATGAGAGGCAAATCTGATATGATA  390

seq1  TTGAATATAGTTTCAGAAATAAGGTAATATCTTAGGATTTGGGCTACTAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATATAGTTTCAGAAATAAGGTAATATCTTAGGATTTGGGCTACTAA  440

seq1  GCTCAAAATCTCTAATTAGAGATATAGTATACATACTATATGGGATGTAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAAATCTCTAATTAGAGATATAGTATACATACTATATGGGATGTAT  490

seq1  ATATATATACATGTTGGGAGAGTAAAATCACAATGAGTAATCTAAAATAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATACATGTTGGGAGAGTAAAATCACAATGAGTAATCTAAAATAA  540

seq1  TTTTCCAGGGATGGCAGAACTTACAGCAAAAGCTACTACCTCTTTGTTTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAGGGATGGCAGAACTTACAGCAAAAGCTACTACCTCTTTGTTTC  590

seq1  TGGCACATTTGGTAGGCATTAGGGCTTGTACCAGTCACCACTCTAGCCCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACATTTGGTAGGCATTAGGGCTTGTACCAGTCACCACTCTAGCCCA  640

seq1  CCAAGGAACAGACAGTAAAACTGTCAGGGGCCTTTGGGATTCTTGAGCTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGAACAGACAGTAAAACTGTCAGGGGCCTTTGGGATTCTTGAGCTG  690

seq1  CAAGTAACAGAATCTAGTTGGATCATAATTTATATAAATATTTATATAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAACAGAATCTAGTTGGATCATAATTTATATAAATATTTATATAAA  740

seq1  CAGTTTCTATTAGTGCTGAAAAAGTAGCAGCTCTGGTTTGGACCCTGTGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCTATTAGTGCTGAAAAAGTAGCAGCTCTGGTTTGGACCCTGTGT  790

seq1  CTAAAGGGTCTTGCTTGAGCCCTTTTCTGTGCCAACTTCTCTCCTTAGGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGGTCTTGCTTGAGCCCTTTTCTGTGCCAACTTCTCTCCTTAGGA  840

seq1  TGAGAAACCCATGGGGGCAAAGGGAATAAATTATTTACCCCAAATCCTTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAACCCATGGGGGCAAAGGGAATAAATTATTTACCCCAAATCCTTG  890

seq1  CCTCTCACTTGTAGACCATCCTTAGTACCTGCTTACAAAGCCTCTGTTTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCACTTGTAGACCATCCTTAGTACCTGCTTACAAAGCCTCTGTTTG  940

seq1  CTTCCAAGAACTTCATGGGCTCTTCCCCCGGATCTCTCTCTCTCTCTCTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAGAACTTCATGGGCTCTTCCCCCGGATCTCTCTCTCTCTCTCTC  990

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTCTGTCTGTCTCTGTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTCTGTCTGTCTCTGTC  1040

seq1  TTTCTCTGAGTCTCTATGTCTGTGTCTGTCTGTCTCTCTCTAGTTTTTTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGAGTCTCTATGTCTGTGTCTGTCTGTCTCTCTCTAGTTTTTTT  1090

seq1  CAGACAGGGTTTCTCTGTGTAGCCCTACCTATTCTGGAACTCATTCTGTA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGGGTTTCTCTGTGTAGCCCTACCTATTCTGGAACTCATTCTGTA  1140

seq1  GACCAGGCTAGCCTTGAATTC  1168
      |||||||||||||||||||||
seq2  GACCAGGCTAGCCTTGAATTC  1161

seq1: chr4_115739969_115740622
seq2: B6Ng01-069G24.g_69_722

seq1  GAATTCCTTTCCTTCATGAACACAGAGCTGGCTGCCTTCACAAAGAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTCCTTCATGAACACAGAGCTGGCTGCCTTCACAAAGAACCA  50

seq1  GAAGGATCCTGGTGTCCTTGACCGCATGATGAAGAAGCTGGACCTCAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGATCCTGGTGTCCTTGACCGCATGATGAAGAAGCTGGACCTCAACT  100

seq1  GTGACGGGCAGCTAGATTTCCAAGAGTTTCTCAACCTCATTGGCAGCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACGGGCAGCTAGATTTCCAAGAGTTTCTCAACCTCATTGGCAGCTTA  150

seq1  GCTATAGCGTGCCATGATTCTTTCATCCAAACTTCCCAGAAGTGAATCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAGCGTGCCATGATTCTTTCATCCAAACTTCCCAGAAGTGAATCTA  200

seq1  ATCCTCTCAGTTCCCATCCAACCACCAAGTCATCACCTCCCCCGACCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTCAGTTCCCATCCAACCACCAAGTCATCACCTCCCCCGACCCCA  250

seq1  TCCACACCTGCACTGAGCCCAGCACACCTACCACAACATGTATCCCACGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACCTGCACTGAGCCCAGCACACCTACCACAACATGTATCCCACGC  300

seq1  CTGCTGGCGAAAATAAAACAATGCCATTTATTTAAATGTAAAAAAAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGCGAAAATAAAACAATGCCATTTATTTAAATGTAAAAAAAAAGA  350

seq1  GAGAGAAAATAATGTCATCACTTAGCTTTAATGTCACAGGGCACAGGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAAATAATGTCATCACTTAGCTTTAATGTCACAGGGCACAGGTCC  400

seq1  TTCCTGGCCTGAACAGTAGAGCTCCTGTCTTGACCCTCATTCTTCAGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGCCTGAACAGTAGAGCTCCTGTCTTGACCCTCATTCTTCAGCAT  450

seq1  GTTATCCATACGCAGGCCCTAGGAACTCCCATGGGGTACCTGACTGTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCCATACGCAGGCCCTAGGAACTCCCATGGGGTACCTGACTGTCCT  500

seq1  GTCTGCAACTCTGAAGTTTTTTTTTATCGTTTACTTCTTTTAGAAGTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCAACTCTGAAGTTTTTTTTTATCGTTTACTTCTTTTAGAAGTTGC  550

seq1  ATGTTGGGGCTAGAGAGATGGCTCAGAGGTTAAGAGTACCAACTGCTCTT  600
      |||||||||||||||| |||||||| ||||||||||||||||||||||||
seq2  ATGTTGGGGCTAGAGATATGGCTCATAGGTTAAGAGTACCAACTGCTCTT  600

seq1  TCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATAGTGGCTCACAACCA  650
      ||||||||||||||||||||||||| |||||| |||||||||||||||||
seq2  TCAGAGGTCCTGAGTTCAATTCCCATCAACCATATAGTGGCTCACAACCA  650

seq1  TCTA  654
      | ||
seq2  TTTA  654