BAC Information

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BAC

Clone NameB6Ng01-069J07
Chromosome4 (Build37)
Map Location 145,402,119 - 145,403,279
singlet/doubletsinglet
Overlap gene1700029I01Rik
Upstream geneLOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704
Downstream geneLOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069J07.bB6Ng01-069J07.g
ACCDH887845DH887846
length1,1311,224
definitionDH887845|Mus musculus domesticus DNA, BAC clone: B6Ng01-069J07, 5' end.DH887846|Mus musculus domesticus DNA, BAC clone: B6Ng01-069J07, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatccttgatgctaataagtgagaggaagcatggacagcaagaga
gaagttgtaaattttataattgtgctaaggaaattttagatgtaaaaaat
gtagaaattagatgtaaaaactgtagatgtagaaattttagatgtaaaaa
ggggcaaattcaaggcatagcttgacttattaggttcatgaggctcccat
ttacaaagataggaagagggggtacactgaggatgggggggtacaaatga
ggaccttggctattggtgtatgattaagacactttcaatattccatttta
attatatatcttggtgactaattttttgtatattttatttatttatattg
caaatattatcccctttcccggttcccctccagaaaccccctattacttc
ccgcctgcttctatgagggtcctcccacatgcccccacctactcctgtct
ccattccctggcattaatgtacactgggccatcaagtctacacaggacct
aggacctctcctcccaggcatgcccaacatgaccatcctctattaaatat
gtagctggggacatgggttgctccatttgtactcgttggttggtgattta
gtctttgggagctctggtgtgtctggttgtttgatattgttgttctccct
atagggtctcaaaccttttcagctccttcagtcctttctctaacttctgc
catatggaccctgtgttcagtccattggttggctgcaagcatctgccttt
gtattttttaggcactggcagagcctctcaggagacatctatatcagctc
ctgtcagcaagcactaattgtcatccacatagtgtctgggattgttgtct
gtatatgggatgaattcccaggcagagcagtctctggatgggccttcagc
atctgttccacactttgtttccatatttcccttagacaggagagtggggt
gaaacaaatttatctttggggttgtgaggtctgattccagaggacttact
atcacatgtatagttgagacatatgtgataacgactctagtgtgagtttc
actgtactcataaattctgggtcctttgtggcttaatgcattagaaggtt
catagaagattatctggacagacttgttata
gaattctcctctgaggaaacagactgggaggaagaagcagctcattacca
gccagctaatcggtcaagaaaaaagccaaaagcggctggcgaaagccagc
atactgttcagcctccgggcagtcggtttcaaggtccgccctatgcggag
ccccgccctgcgtagtgcgtcagccatgcgcagagagacaatgcgcagag
aggcaatgtgcagagaggcaatgcgcagagaggcaatgcgcagagaggca
gtgcgcagagaggcagtgcgcagactcattcattcccagagaggaacaaa
ggaaaatacaacaggcatttccggtctttgaaggagccgagggtgggcgt
gtccacgctccggtagaatacgtgcagattaaagaactcgccgagtcggt
ccgtaaatacggaaccaatgctaattttaccttggtgcagttagacaggc
ttgccggcatggcactaactcctgccgactggcaaacgattgtaaaagcc
gctctccctagtatgggcaaatatatggaatggagagcgctttggcacga
agctgcacaagcgcaggcccgaacaaacgcagctgctttgactccagagc
agagagattggacttttgacttgttaacgggtcagggagcttattctgct
gatcagacaaactaccattggggagcttatgcccaaatttcctccacggc
tattagggcctggaaggcgctctcccgagcaggtgaagccactgggcagt
taacaaaaatcgtccagggacctcagagtccttctcagattttgtggcca
gaatgacagagcagcagagcgtatttttggagagtcagagcaagctgcgc
ctctggtagaacagctcatctatgagcaagccacaaaggagtgccgagcg
gccatagccccaagaagaacaaaggctacagactggctcaggtttgtcga
gagcttgggggacttctcagcatgcagtttagcggctgcatccttcatcc
aaaaccgctcatggcagaataatcagagacatgtttactgcgaagctggc
attttagaagattgcaagctcgaataaacaggaggactcctacccttgtc
taagtggcagaatcaaagccgacagtgctcctgtgagggataaggcaatc
ctccccctgtagctactattgtcaacgactcgcctgtccagtctcaattg
gaacgtgtcatgaccgagacatcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145402119_145403279
seq2: B6Ng01-069J07.b_49_1179

seq1  GAATTCATCCTTGATGCTAATAAGTGAGAGGAAGCATGGACAGCAAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCTTGATGCTAATAAGTGAGAGGAAGCATGGACAGCAAGAGA  50

seq1  GAAGTTGTAAATTTTATAATTGTGCTAAGGAAATTTTAGATGTAAAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGTAAATTTTATAATTGTGCTAAGGAAATTTTAGATGTAAAAAAT  100

seq1  GTAGAAATTAGATGTAAAAACTGTAGATGTAGAAATTTTAGATGTAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAATTAGATGTAAAAACTGTAGATGTAGAAATTTTAGATGTAAAAA  150

seq1  GGGGCAAATTCAAGGCATAGCTTGACTTATTAGGTTCATGAGGCTCCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAAATTCAAGGCATAGCTTGACTTATTAGGTTCATGAGGCTCCCAT  200

seq1  TTACAAAGATAGGAAGAGGGGGTACACTGAGGATGGGGGGGTACAAATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAGATAGGAAGAGGGGGTACACTGAGGATGGGGGGGTACAAATGA  250

seq1  GGACCTTGGCTATTGGTGTATGATTAAGACACTTTCAATATTCCATTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTTGGCTATTGGTGTATGATTAAGACACTTTCAATATTCCATTTTA  300

seq1  ATTATATATCTTGGTGACTATTTTTTTGTATATTTTATTTATTTATATTT  350
      |||||||||||||||||||| |||||||||||||||||||||||||||| 
seq2  ATTATATATCTTGGTGACTAATTTTTTGTATATTTTATTTATTTATATTG  350

seq1  CAAATATTATCCCCTTTCCCGGTTCCCCTCCAGAAACCCCCTATTACTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATTATCCCCTTTCCCGGTTCCCCTCCAGAAACCCCCTATTACTTC  400

seq1  CCGCCTGCTTCTATGAGGGTCCTCCCACATGCCCCCACCTACTCCTGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCTGCTTCTATGAGGGTCCTCCCACATGCCCCCACCTACTCCTGTCT  450

seq1  CCATTCCCTGGCATTAATGTACACTGGGCCATCAAGTCTACACAGGACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCCTGGCATTAATGTACACTGGGCCATCAAGTCTACACAGGACCT  500

seq1  AGGACCTCTCCTCCCAGGCATGCCCAACATGACCATCCTCTATTAAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTCTCCTCCCAGGCATGCCCAACATGACCATCCTCTATTAAATAT  550

seq1  GTAGCTGGGGACATGGGTTGCTCCATTTGTACTCGTTGGTTGGTGATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTGGGGACATGGGTTGCTCCATTTGTACTCGTTGGTTGGTGATTTA  600

seq1  GTCTTTGGGAGCTCTGGTGTGTCTGGTTGTTTGATATTGTTGTTCTCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGGGAGCTCTGGTGTGTCTGGTTGTTTGATATTGTTGTTCTCCCT  650

seq1  ATAGGGTCTCAAACCTTTTCAGCTCCTTCAGTCCTTTCTCTAACTTCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGTCTCAAACCTTTTCAGCTCCTTCAGTCCTTTCTCTAACTTCTGC  700

seq1  CATATGGACCCTGTGTTCAGTCCATTGGTTGGCTGCAAGCATCTGCCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGACCCTGTGTTCAGTCCATTGGTTGGCTGCAAGCATCTGCCTTT  750

seq1  GTATTTTTTAGGCACTGGCAGAGCCTCTCAGGAGACATCTATATCAGGCT  800
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTATTTTTTAGGCACTGGCAGAGCCTCTCAGGAGACATCTATATCA-GCT  799

seq1  CCTGTCAGCAAGCACTAATTGTCATCCACAATAGTGTCTGGGATTGTTGT  850
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCTGTCAGCAAGCACTAATTGTCATCCAC-ATAGTGTCTGGGATTGTTGT  848

seq1  CTGTATATGGGATGAATTCCCAGGCAGAGCAGTCTCTGGAT-GGCCTTCA  899
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTGTATATGGGATGAATTCCCAGGCAGAGCAGTCTCTGGATGGGCCTTCA  898

seq1  GCATCTGTTCCACACTTTGTTTCCATATTTCCCTTAGACAGGAGAGTGGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGTTCCACACTTTGTTTCCATATTTCCCTTAGACAGGAGAGTGGG  948

seq1  GTGAAACAAATTTAATCTTTGGGGTTGTGAGGTCTGATCCCAAGAGGACT  999
      ||||||||||||| |||||||||||||||||||||||| || ||||||||
seq2  GTGAAACAAATTT-ATCTTTGGGGTTGTGAGGTCTGATTCC-AGAGGACT  996

seq1  TACATATCACATGTAATTAGTTGGAAGACATATGTGATAAAACGAACTCT  1049
      ||| |||||||||||  ||||||  |||||||||||||  |||| |||||
seq2  TAC-TATCACATGTA--TAGTTG--AGACATATGTGAT--AACG-ACTCT  1038

seq1  AGTGTGAGTTTTCACTGTACTTCATATAATTCTTGGGTTTCTTTGTTGTG  1099
      |||||||| ||||||||||| ||||| ||||||  || | |||||| |  
seq2  AGTGTGAG-TTTCACTGTAC-TCATA-AATTCT--GGGTCCTTTGTGG--  1081

seq1  CTTTTATTGTCATTTTAGATAGGGTCTCAATAAGAAGTATATCTGGACAG  1149
         ||| || ||  ||||| ||| ||   || |||||  |||||||||||
seq2  --CTTAATG-CA--TTAGA-AGGTTC---AT-AGAAGATTATCTGGACAG  1121

seq1  ACACTTGTTATA  1161
        ||||||||||
seq2  --ACTTGTTATA  1131