BAC Information

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BAC

Clone NameB6Ng01-069K06
Chromosome4 (Build37)
Map Location 40,783,348 - 40,911,839
singlet/doubletdoublet
Overlap geneB4galt1, LOC100039668, Spink4, Bag1, Chmp5
Upstream geneLOC621880, LOC384007, Aco1, Ddx58, Topors, Ndufb6, 4930509K18Rik, A930001M12Rik, Aptx, LOC665630, LOC622208, Dnaja1, Smu1, LOC100042305
Downstream geneNfx1, Aqp7, Aqp3, Nol6, Ube2r2, Ubap2, Wdr40a, Ubap1, Kif24, Nudt2, AI464131, 1110017D15Rik, 1700066J24Rik, 2310028H24Rik, Dnaic1, 2310040A07Rik, LOC100042420, Cntfr, 2810432D09Rik, Dctn3, OTTMUSG00000006683, Oprs1, Galt, Il11ra1, Ccl27, LOC100039789, LOC623085, LOC100042466, LOC100042472, LOC100042493, Ccl19-ps1, LOC621580, LOC545611, LOC100042524, LOC100042519
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069K06.bB6Ng01-069K06.g
ACCDH887889DH887890
length637640
definitionDH887889|Mus musculus domesticus DNA, BAC clone: B6Ng01-069K06, 5' end.DH887890|Mus musculus domesticus DNA, BAC clone: B6Ng01-069K06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,783,348 - 40,783,984)(40,911,055 - 40,911,839)
sequence
gaattcatattctgcaatgatctgtaaatcaaagagtagagaaaaagaga
gaattgatgggggggggggaaatcttttaagtaacaaatacaaagaaatc
atccaccacagtaactgattcagggataaataaatacctacagatgttaa
aaaacaaatccagtggagaaaagtgggaggaatcacggaatagttgcata
agcctaggctgagggagtagcccgggaggaacacaagtataaggctagcc
tgaactagacagtgagaccccggccaagcaaaatatacaaaaagaatagt
catgaactaacagcaaacctgaggaaacttctacaaagtaactggcttgt
agtcttcagcaaggttccgtcaaaatacaaaggaagtctgagatattgtg
tcaaatggaaaggctgaatataatacatgatttctggttttctttttacc
gcagtattggcacaacagacaaatcttcctaaggagctcgtcatggtggt
gacaggacaagggaactgaggagcatgaattctagaccagccaagaccat
tcagcagagacctggtctccaaacacatgtacacacacatctctctgtct
gtctgtctgtctgtctgtgtctgtgtctgtctgtctg
gaattccttaacggaaaaaataaaaatacaggagcagtgtagatagcttt
tccttcaaagaaaggaaagaaacctaaatctggttggcagatcgggaact
atttcctagtcccagaatacttctcttgttgtttcacatcacgtgctgga
atgttgtaagtctacgaagcgggaatctgcggcagtccaaattcatccac
cagcacgccatcctgggaggagaaatcaacggtcagggctgctctttgac
gcagtgaacacgatcacagttagcaggcaaacgtcacacacccaagttaa
caattgaaaccaaaatcctactcagaagctgacaacgagcctcctctaaa
aaggcaaaaggggcttgcttcataaatcaggaactgcgaaggattaaagt
ggaggtcctctgcagggtggaaaagaaagaggagggctggagagatggct
cagcgggtaagagcactgactgcgcttccaaaggtcctgagttcaattcc
cagcaaccacatggtggctcacaaccatctgtaatgagatctgatgccct
tttctggtgtgtctgaggacagctacagtgtacttacataaataaataaa
taagaaaagaaagaggaggaaacattcaagaataaaccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_40783348_40783984
seq2: B6Ng01-069K06.b_43_679

seq1  GAATTCATATTCTGCAATGATCTGTAAATCAAAGAGTAGAGAAAAAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATTCTGCAATGATCTGTAAATCAAAGAGTAGAGAAAAAGAGA  50

seq1  GAATTGATGGGGGGGGGGGAAATCTTTTAAGTAACAAATACAAAGAAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGATGGGGGGGGGGGAAATCTTTTAAGTAACAAATACAAAGAAATC  100

seq1  ATCCACCACAGTAACTGATTCAGGGATAAATAAATACCTACAGATGTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACCACAGTAACTGATTCAGGGATAAATAAATACCTACAGATGTTAA  150

seq1  AAAACAAATCCAGTGGAGAAAAGTGGGAGGAATCACGGAATAGTTGCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAATCCAGTGGAGAAAAGTGGGAGGAATCACGGAATAGTTGCATA  200

seq1  AGCCTAGGCTGAGGGAGTAGCCCGGGAGGAACACAAGTATAAGGCTAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGGCTGAGGGAGTAGCCCGGGAGGAACACAAGTATAAGGCTAGCC  250

seq1  TGAACTAGACAGTGAGACCCCGGCCAAGCAAAATATACAAAAAGAATAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTAGACAGTGAGACCCCGGCCAAGCAAAATATACAAAAAGAATAGT  300

seq1  CATGAACTAACAGCAAACCTGAGGAAACTTCTACAAAGTAACTGGCTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACTAACAGCAAACCTGAGGAAACTTCTACAAAGTAACTGGCTTGT  350

seq1  AGTCTTCAGCAAGGTTCCGTCAAAATACAAAGGAAGTCTGAGATATTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCAGCAAGGTTCCGTCAAAATACAAAGGAAGTCTGAGATATTGTG  400

seq1  TCAAATGGAAAGGCTGAATATAATACATGATTTCTGGTTTTCTTTTTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGGAAAGGCTGAATATAATACATGATTTCTGGTTTTCTTTTTACC  450

seq1  GCAGTATTGGCACAACAGACAAATCTTCCTAAGGAGCTCGTCATGGTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTATTGGCACAACAGACAAATCTTCCTAAGGAGCTCGTCATGGTGGT  500

seq1  GACAGGACAAGGGAACTGAGGAGCATGAATTCTAGACCAGCCAAGACCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGACAAGGGAACTGAGGAGCATGAATTCTAGACCAGCCAAGACCAT  550

seq1  ACAGCAGAGACCTGGTCTCCAAACACATGTACACACACATCTCTCTGTCT  600
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGAGACCTGGTCTCCAAACACATGTACACACACATCTCTCTGTCT  600

seq1  GTCTGTCTGTCTGTCTGTGTCTGTGTCTGTCTGTCTG  637
      |||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCTGTCTGTCTGTGTCTGTGTCTGTCTGTCTG  637

seq1: chr4_40911055_40911839
seq2: B6Ng01-069K06.g_69_708 (reverse)

seq1  TGGGTTTATTCTTGTATGTTTCCTCCTCTTTCCTTTCTTTTCTTTTCTTA  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTTATTTATTTATTATATGTAAGTACATTGTAGCTGTTATTTATTTATTT  100
                                                        
seq2  --------------------------------------------------  0

seq1  ATTTATTATATGTAGGTGCACTGTAGCTGTCTTCAGACACTCCTCTGGGT  150
                                                   |||||
seq2  ---------------------------------------------TGGGT  5

seq1  TTATTCTTGTATGTTTCCTCCTCTTTCTTTTCTTATTTATTTATTTATGT  200
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTTGAATGTTTCCTCCTCTTTCTTTTCTTATTTATTTATTTATGT  55

seq1  AAGTACACTGTAGCTGTCCTCAGACACACCAGAAAAGGGCATCAGATCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACACTGTAGCTGTCCTCAGACACACCAGAAAAGGGCATCAGATCTC  105

seq1  ATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGG  155

seq1  ACCTTTGGAAGCGCAGTCAGTGCTCTTACCCGCTGAGCCATCTCTCCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGGAAGCGCAGTCAGTGCTCTTACCCGCTGAGCCATCTCTCCAGC  205

seq1  CCTCCTCTTTCTTTTCCACCCTGCAGAGGACCTCCACTTTAATCCTTCGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCTTTCTTTTCCACCCTGCAGAGGACCTCCACTTTAATCCTTCGC  255

seq1  AGTTCCTGATTTATGAAGCAAGCCCCTTTTGCCTTTTTAGAGGAGGCTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTGATTTATGAAGCAAGCCCCTTTTGCCTTTTTAGAGGAGGCTCG  305

seq1  TTGTCAGCTTCTGAGTAGGATTTTGGTTTCAATTGTTAACTTGGGTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGCTTCTGAGTAGGATTTTGGTTTCAATTGTTAACTTGGGTGTGT  355

seq1  GACGTTTGCCTGCTAACTGTGATCGTGTTCACTGCGTCAAAGAGCAGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTTTGCCTGCTAACTGTGATCGTGTTCACTGCGTCAAAGAGCAGCCC  405

seq1  TGACCGTTGATTTCTCCTCCCAGGATGGCGTGCTGGTGGATGAATTTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCGTTGATTTCTCCTCCCAGGATGGCGTGCTGGTGGATGAATTTGGA  455

seq1  CTGCCGCAGATTCCCGCTTCGTAGACTTACAACATTCCAGCACGTGATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCGCAGATTCCCGCTTCGTAGACTTACAACATTCCAGCACGTGATGT  505

seq1  GAAACAACAAGAGAAGTATTCTGGGACTAGGAAATAGTTCCCGATCTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAACAAGAGAAGTATTCTGGGACTAGGAAATAGTTCCCGATCTGCC  555

seq1  AACCAGATTTAGGTTTCTTTCCTTTCTTTGAAGGAAAAGCTATCTACACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGATTTAGGTTTCTTTCCTTTCTTTGAAGGAAAAGCTATCTACACT  605

seq1  GCTCCTGTATTTTTATTTTTTCCGTTAAGGAATTC  785
      |||||||||||||||||||||||||||||||||||
seq2  GCTCCTGTATTTTTATTTTTTCCGTTAAGGAATTC  640