BAC Information

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BAC

Clone NameB6Ng01-069K17
Chromosome4 (Build37)
Map Location 144,204,017 - 144,205,180
singlet/doubletsinglet
Overlap geneLOC435815
Upstream geneLOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215
Downstream geneGm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069K17.bB6Ng01-069K17.g
ACCDH887909DH887910
length1,1481,185
definitionDH887909|Mus musculus domesticus DNA, BAC clone: B6Ng01-069K17, 5' end.DH887910|Mus musculus domesticus DNA, BAC clone: B6Ng01-069K17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactatgtatccagaaatgacctgaggctcctgtttgtccaactg
ctatcttcctagtgctgggattagaactcttatcttccaagtgctgtgga
tagagttgtacaataccatgcttggttagtgtggttctgagggccagact
gagcttgcacactaggtcagcactctatttagctatacccccagctcttc
ctttgtgtttaaagttttgagataagtgtctcatgatgttgaagtagttg
tcttttgatttccaccatgtgaggactaagattggattcaggcatcacta
ctcattaactagactctatttctgaggacagaaaaattatttcagccagt
ttctcctcaagatagatccatgactcagcgtgtctgacaccttcaacagc
agccccctactgccttctactcacttgcttctaggtattttgttgcatac
ttgtgaacatctgggaaccactgactatttctcagcaggagccctttgca
ggtcaaatcaatgtgttgatgcatgtatccagctttttagcacggctgcc
tgggtggctggactctgcattttcctttgttgctgactggggataggaac
caaagcctatccttggtagagtaggtttggaaagaaagtttggctttgtg
tgggaagtaaacagtttgaagaacataatgtctcaatcttggctgaaagc
ctgaagtgtccaaagttcataagtgattactttcagatggcagctacagt
ggagaagagaggtagagaagagaggggtaaaaagaagctgcagccaagct
gtctgttaagcatctctgttctactctcactggctgcaagaaccctttgc
ttaatctctatgtatgtcagagtctccctcttcaggcaggcaacatctct
gtcttgtgaggtcaatatacatattacatagcatatgacaagaataatag
tttcatatgtgactttaaacgtaatgtggtcctgtgttgttggattttcc
tccccatggaacacccctagggggagtgaggcaaccttgtttcaatacat
aaattggaatatttgggcttaacattcatttccggtatctgcagtacttc
ttaaaggcaacggttcagccatggactgtgtagaatcacgtagtttgg
gaattctcacctgaggaataccgaatggaagagaagcacctgaaaaaatg
ttcaacatccttagtcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccactcagaatggctaagatcaaaaattcaggtgagagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggtggttcctca
gaaaattggacatagtactaccagaggatccagtaatacctctcctgggc
atatatccagaagatgtccccaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatatggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacaaattcacaaa
ttaactcacacaatatgtactcactgataagtggatattagcccaaaaac
ctaggatacccaagatataagatacaattttgctaaacacatgaaactca
agaagaatgaagactgaagtgtggacactattcccttccttagatttggg
aacaaaatacccatggaaggagttacagagacaaagtttggagctgagac
gaaaggatggaccatcctgagactgccatatccagggatccaccccataa
tcagctttcaaaagctgacaccattgcatacactagcaagattttgctga
aaggacccagattgtagctgtctcttgtgaggctattgccggagcctagc
aaacacagaagtggatgcttcacagtcagcttttggatggatcacagggc
ccaatggaggagctagagaagtatccaaggagctaagagatctgcaccct
tatagtggaacaacattatgaactaacagtacctcggagcttttgactct
gctgcatatgattcaaagaatgtccatgtcggcatcacttgaaaagatgc
tcattggactgccaactgtttatttccctattcacgggacccctggtcta
ataaactggtgatagtgggggtggtataggaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_144204017_144205180
seq2: B6Ng01-069K17.b_48_1195

seq1  GAATTCACTATGTATCCAGAAATGACCTGAGGCTCCTGTTTGTCCAACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTATCCAGAAATGACCTGAGGCTCCTGTTTGTCCAACTG  50

seq1  CTATCTTCCTAGTGCTGGGATTAGAACTCTTATCTTCCAAGTGCTGTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTCCTAGTGCTGGGATTAGAACTCTTATCTTCCAAGTGCTGTGGA  100

seq1  TAGAGTTGTACAATACCATGCTTGGTTAGTGTGGTTCTGAGGGCCAGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTTGTACAATACCATGCTTGGTTAGTGTGGTTCTGAGGGCCAGACT  150

seq1  GAGCTTGCACACTAGGTCAGCACTCTATTTAGCTATACCCCCAGCTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTGCACACTAGGTCAGCACTCTATTTAGCTATACCCCCAGCTCTTC  200

seq1  CTTTGTGTTTAAAGTTTTGAGATAAGTGTCTCATGATGTTGAAGTAGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGTTTAAAGTTTTGAGATAAGTGTCTCATGATGTTGAAGTAGTTG  250

seq1  TCTTTTGATTTCCACCATGTGAGGACTAAGATTGGATTCAGGCATCACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGATTTCCACCATGTGAGGACTAAGATTGGATTCAGGCATCACTA  300

seq1  CTCATTAACTAGACTCTATTTCTGAGGACAGAAAAATTATTTCAGCCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTAACTAGACTCTATTTCTGAGGACAGAAAAATTATTTCAGCCAGT  350

seq1  TTCTCCTCAAGATAGATCCATGACTCAGCGTGTCTGACACCTTCAACAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTCAAGATAGATCCATGACTCAGCGTGTCTGACACCTTCAACAGC  400

seq1  AGCCCCCTACTGCCTTCTACTCACTTGCTTCTAGGTATTTTGTTGCATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCCTACTGCCTTCTACTCACTTGCTTCTAGGTATTTTGTTGCATAC  450

seq1  TTGTGAACATCTGGGAACCACTGACTATTTCTCAGCAGGAGCCCTTTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAACATCTGGGAACCACTGACTATTTCTCAGCAGGAGCCCTTTGCA  500

seq1  GGTCAAATCAATGTGTTGATGCATGTATCCAGCTTTTTAGCACGGCTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAATCAATGTGTTGATGCATGTATCCAGCTTTTTAGCACGGCTGCC  550

seq1  TGGGTGGCTGGACTCTGCATTTTCCTTTGTTGCTGACTGGGGATAGGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGCTGGACTCTGCATTTTCCTTTGTTGCTGACTGGGGATAGGAAC  600

seq1  CAAAGCCTATCCTTGGTAGAGTAGGTTTGGAAAGAAAGTTTGGCTTTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCTATCCTTGGTAGAGTAGGTTTGGAAAGAAAGTTTGGCTTTGTG  650

seq1  TGGGAAGTAAACAGTTTGAAGAACATAATGTCTCAATCTTGGCTGAAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGTAAACAGTTTGAAGAACATAATGTCTCAATCTTGGCTGAAAGC  700

seq1  CTGAAGTGTCCAAAGTTCATAAGTGATTAC-TTCAGATGGCAGCTACAGT  749
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTGAAGTGTCCAAAGTTCATAAGTGATTACTTTCAGATGGCAGCTACAGT  750

seq1  GGAGAAGAGAGGTAGAGAAGAGAGGGGTAAAAAGAAGCTGCAGCCAAGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGAGAGGTAGAGAAGAGAGGGGTAAAAAGAAGCTGCAGCCAAGCT  800

seq1  GTCTGTTAAGCATCTCTGTTCTACTCTCACTGGCTGCAAGAACCCTTTGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTAAGCATCTCTGTTCTACTCTCACTGGCTGCAAGAACCCTTTGC  850

seq1  TTAATCTCTATGTATGTCAGAGTCTCCCTCTTCAAGGCAGGCAACATTCT  899
      ||||||||||||||||||||||||||||||||| |||||||||||| |||
seq2  TTAATCTCTATGTATGTCAGAGTCTCCCTCTTC-AGGCAGGCAACA-TCT  898

seq1  CTGTCTTGTGAGGTCAATATACATATTACATAGCATATGACAAAGAATAA  949
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTGTCTTGTGAGGTCAATATACATATTACATAGCATATGAC-AAGAATAA  947

seq1  TAGGTTTCATATGTGACTTTAAAACGTAATGTGTCCCTGTGTTGTTGGAT  999
      || ||||||||||||||||| ||||||||||||  |||||||||||||||
seq2  TA-GTTTCATATGTGACTTT-AAACGTAATGTGGTCCTGTGTTGTTGGAT  995

seq1  TTTCCTCCACAATGGACCACACCTA-GTGGAGTGAGCAAACCTTG-TTCA  1047
      |||||||| | ||||| ||| |||| | ||||||||  ||||||| ||||
seq2  TTTCCTCC-CCATGGAACACCCCTAGGGGGAGTGAGGCAACCTTGTTTCA  1044

seq1  ATACAATAATTGAAATATTTTGGCCTCAACCATTCATTCACCGTTATCTG  1097
      |||||  ||||| ||||||| ||| |  | ||||||||  ||| ||||||
seq2  ATACATAAATTGGAATATTTGGGCTT--AACATTCATT-TCCGGTATCTG  1091

seq1  CAAGTACTTTCCTAAAGGTCAAACTGTTTCAAGCCCATGGACTGTGTAGA  1147
      | ||||| ||| |||||| |||   | ||||   ||||||||||||||||
seq2  C-AGTAC-TTCTTAAAGG-CAA--CGGTTCA--GCCATGGACTGTGTAGA  1134

seq1  ACTACAGGATAGTTTGG  1164
      |  ||    ||||||||
seq2  ATCAC---GTAGTTTGG  1148