BAC Information

Click to search

BAC

Clone NameB6Ng01-069O15
Chromosome4 (Build37)
Map Location 140,974,010 - 141,093,206
singlet/doubletdoublet
Overlap geneHspb7, Gm694, Zbtb17, Spen, LOC100042951
Upstream geneArhgef10l, Rcc2, Padi6, Padi4, Padi3, Padi1, Padi2, Sdhb, Atp13a2, Mfap2, Crocc, Necap2, LOC638991, Spata21, D4Ertd22e, Fbxo42, 6330545A04Rik, Arhgef19, Epha2, Gm693, Clcnka, Clcnkb
Downstream geneB330016D10Rik, Fblim1, BC025833, Slc25a34, Plekhm2, Ddi2, Agmat, Dnajc16, Casp9, Ela2a, Ctrc, Efhd2, Fhad1, Tmem51, 9030409G11Rik, EG665983
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069O15.bB6Ng01-069O15.g
ACCDH888074DH888075
length521933
definitionDH888074|Mus musculus domesticus DNA, BAC clone: B6Ng01-069O15, 5' end.DH888075|Mus musculus domesticus DNA, BAC clone: B6Ng01-069O15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,974,010 - 140,974,532)(141,092,275 - 141,093,206)
sequence
ctggtcctcagaagtccattcagaagtaagtatgtatatatgtatgtatg
tatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgta
ttaaatcaccaggcttattttttaaagatttatttattattatacacaag
tacactgtagctgtcttcagatgtgccagaagagggcatcagatctcatt
acgggtggttgtgagccaccatgtggtttctgggatttgaactcaggacc
ttcggaagagcagtcagtgctcttaccttctgagccatcttgccagcccc
caatcaccaggtttattttgggctggagagatggctcagtagttaagagc
acttgtccctgaagaggacccctgttcgatttccagccccccacttacaa
ccatccataactccagttccaggggatccaatatcctcttctggtctcca
tgggcacacagcatgcatgtggtacccaagtatacatgcagacaaaacac
tcactcgcttattttcttttt
gaattcccactatccagtcggtgcagggaatataattaggagaaggaacg
tcctcacattagagtcaacctgggaaaatgggttgtgtcgcccggtctag
aacctctttggtgaggcctgggaagcgtgagcgccttcctttctctctct
ctgatggagggccattgattctgttggccgttgctctgaccgggggtatt
aaatcttcgcctccggggcgcgcgtgtgcgcgtgcccgcgtgtgaaaagg
agctgggtatagtgaggccattcataacctgccgggatgtcctccgcagg
cctgggggaggtgcgcgctgcctgggactccgggtgtttactacgttgtg
tctgagacacgggagagggggaggtccggagatggagtgttggccggggt
gcccggggatgaaaggggactgcagcagctggagcgccagcagatgggaa
ctttctctgcccgtgctgctccacccctcggctcgggtctctgccctcta
gtagcaggtcctcagcgtggagaagatagcactccgctttcttaggttct
ggagtggaaacccctctgcgctgtacctcctttaaatcgcccagtggctc
ttccatgggtctctgcatgggaaattgatacgcacccgacgtgcaaacac
gtgcatcgcctcattcgctctgctcctgtgttgggtggtcagacttgaca
ttttacatcatgcagatttcagaggcacggcttgcctcagacctggagtt
tgaccccctgtgcaagccgagggagagggagagcagcgagggaggaggtt
gggcgcagtccctgggaggcttggagcttggtgccgcggtccggctggtg
tgaatgactcttctaagatggcggccaggacccactttatgttgggaatc
tgcggagccgctccgatgcacggtagggagggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_140974010_140974532
seq2: B6Ng01-069O15.b_49_575

seq1  GAATTCCTGGTCCTCAGAAGTCCATTCAGAAGTAAGTATGTATA----TA  46
      ||||||||||||||||||||||||||||||||||||||||||||    ||
seq2  GAATTCCTGGTCCTCAGAAGTCCATTCAGAAGTAAGTATGTATATATGTA  50

seq1  TGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATG  96
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATG  100

seq1  TATGTATTAAATCACCAGGCTTATTTTTTAAAGATTTATTTATTATTATA  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATTAAATCACCAGGCTTATTTTTTAAAGATTTATTTATTATTATA  150

seq1  CACAAGTACACTGTAGCTGTCTTCAGATGTGCCAGAAGAGGGCATCAGAT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGTACACTGTAGCTGTCTTCAGATGTGCCAGAAGAGGGCATCAGAT  200

seq1  CTCATTACGGGTGGTTGTGAGCCACCATGTGGTTTCTGGGATTTGAACTC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTACGGGTGGTTGTGAGCCACCATGTGGTTTCTGGGATTTGAACTC  250

seq1  AGGACCTTCGGAAGAGCAGTCAGTGCTCTTACCTTCTGAGCCATCTTGCC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTTCGGAAGAGCAGTCAGTGCTCTTACCTTCTGAGCCATCTTGCC  300

seq1  AGCCCCCAATCACCAGGTTTATTTTGGGCTGGAGAGATGGCTCAGTAGTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCCAATCACCAGGTTTATTTTGGGCTGGAGAGATGGCTCAGTAGTT  350

seq1  AAGAGCACTTGTCCCTGAAGAGGACCCCTGTTCGATTTCCAGCCCCCCAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCACTTGTCCCTGAAGAGGACCCCTGTTCGATTTCCAGCCCCCCAC  400

seq1  TTACAACCATCCATAACTCCAGTTCCAGGGGATCCAATATCCTCTTCTGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAACCATCCATAACTCCAGTTCCAGGGGATCCAATATCCTCTTCTGG  450

seq1  TCTCCATGGGCACACAGCATGCATGTGGTACCCAAGTATACATGCAGACA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATGGGCACACAGCATGCATGTGGTACCCAAGTATACATGCAGACA  500

seq1  AAACACTCACTCGCTTATTTTCTTTTT  523
      |||||||||||||||||||||||||||
seq2  AAACACTCACTCGCTTATTTTCTTTTT  527

seq1: chr4_141092275_141093206
seq2: B6Ng01-069O15.g_71_1003 (reverse)

seq1  GCCCTCCCTGCCGTGCATTCGGAGCGGCTCCGCAGATTCCC-ACATAAAG  49
      ||||||||| ||||||| ||||||||||||||||||||||| ||||||||
seq2  GCCCTCCCTACCGTGCA-TCGGAGCGGCTCCGCAGATTCCCAACATAAAG  49

seq1  TGGGTCCTGGCCGCCATCTTAG-AGAGTCATTCACACCAGCCGGACCGCG  98
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGGGTCCTGGCCGCCATCTTAGAAGAGTCATTCACACCAGCCGGACCGCG  99

seq1  GCACCACGCTTCCAAGCCTCCCA-GGACTGCGCCCAACCTCCTCCCTCGC  147
      |||||| || ||||||||||||| ||||||||||||||||||||||||||
seq2  GCACCAAGC-TCCAAGCCTCCCAGGGACTGCGCCCAACCTCCTCCCTCGC  148

seq1  TGCTCTCCCTCTCCCTCGGCTTGCACAGGGGGTCAAACTCCAGGTCTGAG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCCCTCTCCCTCGGCTTGCACAGGGGGTCAAACTCCAGGTCTGAG  198

seq1  GCAAGCCGTGCCTCTGAAATCTGCATGATGTAAAATGTCAAGTCTGACCA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCCGTGCCTCTGAAATCTGCATGATGTAAAATGTCAAGTCTGACCA  248

seq1  CCCAACACAGGAGCAGAGCGAATGAGGCGATGCACGTGTTTGCACGTCGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACACAGGAGCAGAGCGAATGAGGCGATGCACGTGTTTGCACGTCGG  298

seq1  GTGCGTATCAATTTCCCATGCAGAGACCCATGGAAGAGCCACTGGGCGAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGTATCAATTTCCCATGCAGAGACCCATGGAAGAGCCACTGGGCGAT  348

seq1  TTAAAGGAGGTACAGCGCAGAGGGGTTTCCACTCCAGAACCTAAGAAAGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGAGGTACAGCGCAGAGGGGTTTCCACTCCAGAACCTAAGAAAGC  398

seq1  GGAGTGCTATCTTCTCCACGCTGAGGACCTGCTACTAGAGGGCAGAGACC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGCTATCTTCTCCACGCTGAGGACCTGCTACTAGAGGGCAGAGACC  448

seq1  CGAGCCGAGGGGTGGAGCAGCACGGGCAGAGAAAGTTCCCATCTGCTGGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCCGAGGGGTGGAGCAGCACGGGCAGAGAAAGTTCCCATCTGCTGGC  498

seq1  GCTCCAGCTGCTGCAGTCCCCTTTCATCCCCGGGCACCCCGGCCAACACT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGCTGCTGCAGTCCCCTTTCATCCCCGGGCACCCCGGCCAACACT  548

seq1  CCATCTCCGGACCTCCCCCTCTCCCGTGTCTCAGACACAACGTAGTAAAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCCGGACCTCCCCCTCTCCCGTGTCTCAGACACAACGTAGTAAAC  598

seq1  ACCCGGAGTCCCAGGCAGCGCGCACCTCCCCCAGGCCTGCGGAGGACATC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGGAGTCCCAGGCAGCGCGCACCTCCCCCAGGCCTGCGGAGGACATC  648

seq1  CCGGCAGGTTATGAATGGCCTCACTATACCCAGCTCCTTTTCACACGCGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCAGGTTATGAATGGCCTCACTATACCCAGCTCCTTTTCACACGCGG  698

seq1  GCACGCGCACACGCGCGCCCCGGAGGCGAAGATTTAATACCCCCGGTCAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGCGCACACGCGCGCCCCGGAGGCGAAGATTTAATACCCCCGGTCAG  748

seq1  AGCAACGGCCAACAGAATCAATGGCCCTCCATCAGAGAGAGAGAAAGGAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACGGCCAACAGAATCAATGGCCCTCCATCAGAGAGAGAGAAAGGAA  798

seq1  GGCGCTCACGCTTCCCAGGCCTCACCAAAGAGGTTCTAGACCGGGCGACA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCTCACGCTTCCCAGGCCTCACCAAAGAGGTTCTAGACCGGGCGACA  848

seq1  CAACCCATTTTCCCAGGTTGACTCTAATGTGAGGACGTTCCTTCTCCTAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCATTTTCCCAGGTTGACTCTAATGTGAGGACGTTCCTTCTCCTAA  898

seq1  TTATATTCCCTGCACCGACTGGATAGTGGGAATTC  932
      |||||||||||||||||||||||||||||||||||
seq2  TTATATTCCCTGCACCGACTGGATAGTGGGAATTC  933