BAC Information

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BAC

Clone NameB6Ng01-070C09
Chromosome4 (Build37)
Map Location 123,690,399 - 123,846,962
singlet/doubletdoublet
Overlap genenone
Upstream geneTrit1, Bmp8b, Oxct2b, Ppie, Hpcal4, Nt5c1a, Heyl, LOC194197, LOC622334, Pabpc4, Bmp8a, Oxct2a, Macf1, D830031N03Rik, LOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc
Downstream gene1700057H15Rik, LOC100039332, Pou3f1, Utp11l, Fhl3, Sf3a3, LOC664991, Inpp5b, LOC100039433, Mtf1, Yrdc, Gm50, Epha10, Cdca8, 9930104L06Rik, Rspo1, Gnl2, Dnali1, Snip1, 2310005N01Rik, Zc3h12a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070C09.bB6Ng01-070C09.g
ACCDH888237DH888238
length1,131910
definitionDH888237|Mus musculus domesticus DNA, BAC clone: B6Ng01-070C09, 5' end.DH888238|Mus musculus domesticus DNA, BAC clone: B6Ng01-070C09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,845,814 - 123,846,962)(123,690,399 - 123,691,077)
sequence
gaattccatcatcttcaagatgatccaggctctttggaaccttgtgttcc
atcaaatccttatgagaaagtgacgttgtccaaatccatcatcacagccc
tgtggctcctccagctgtcactccagctggctggtcccagaggctccaga
agcctttcctccatctggggagtgcttctgcacagacaagagggcctttc
tccctacccttttgtcaggtcattccctagaaggtctctccttacctctg
ccgagctatctcaggcaccagcagcttggcacaaagtgtctccattgttc
aggatttgctcagtgccttatgatgcacacacaacttgaagaaatgcaca
tgagtcacttcttcagtatcctttcaagtacatttggttgaggtcctggc
atagcagttcaatgcctgtcatcttagcactcaggaggttgaggtaggaa
gggtgccataaattccaagccagcttggactacagaatgagttccaggac
aatttgaactacaatatgaatgaaaccctgctgtgatggtttctatatgc
ttggcccagggaatggcactattagaaggtgtggccctattggagtaagt
gtgtcattgtgggtgtgggctataaaacccccatcctagctgcttggaag
tgagtcttctactaccagccttcagataaagatgtcgaactctcagctcc
tcctgcaccatgcctgcctggatgctgccatgttcctgccatgataataa
tggactgaatctcagaacctgtaagccagcctcaattaaatgctatcctt
ctaagagttgccttggccatggtgtctgttcacagcagtaaaaccctaac
gaaaacatatatctacaatataaagtaaaataaagttaaaaaaaaaacaa
acaaggtatttttgttagtaaggaatccctctagaatgtattctcgcgta
atttttattcccaacccactcaggaaggcaacacctccctgaggtccagt
gtaacttctctcttcatcctcattattgaaatcaccgaaggcaataggtt
catctccaagagacaaaggctgaaacacggtgaagtgcccacccgtacca
tactctaggttctagataatggtaacaataa
gaattcaaaccaatagtcacctaagagctttgtgaccttggcaagtaccc
tcagctctctgaccccagaagggctgggcacatgaggctggtgtgaggat
ttctgctctgagtgaggcacacagagaaccctgtaaattctgtctggttc
tcctttgggccacagaggggtttcctcaactcagctgagaaggggacact
tgaactcattatgtggcccaggttggccttgaacctgtggcactccttct
gccacagcctcctgagggctaggattacaggagtgcaccatcacagacag
cattacttatagtacaaattacacccctgcaccctttcctttgctctctt
acattcttcattaaatatttattggctcatcttgtgtccgagacactgtg
agagaggttaagaacacaactcagtgaaaaacgggaggctggagtcaaca
agcaaggaacatgccagggttctatgaagaacagtgtgttgtgtttcata
aaatgacaatataatgcggcagaagggagcaccttagcgggccctgccaa
aggtgttctccccaaacaatcaagccatgagacagacctagtataaagaa
gggttattggaaggaaagaggacctggaaaaaggatagaagtgggggtgg
agaaggacagagagaaggaggggagaggatgtacaaattcaggatagtta
attatttgtaattattttcctgaaacaatttcacatacctactcagatct
gggctttgtgtagcagtacaggtaaataaaaaaaccaggattaaccatca
caaacactaaaaataaagctacataaccaaacttaccatcattattatgg
gattaaatcaggtagtgaaaaactgtgataactagttttaaaatagtacc
attatgccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_123845814_123846962
seq2: B6Ng01-070C09.b_43_1173 (reverse)

seq1  TTATTGTTTACCATTATCTAGAAACTAGGAGTATGGGTATGGGGGTGGGG  50
      |||||| |||||||||||||||| ||| ||||||||   |  ||||||| 
seq2  TTATTG-TTACCATTATCTAGAACCTA-GAGTATGG---TACGGGTGGG-  44

seq1  CGACTTCTACCGTGTTTCAGCCCCTGGTCTCTTTGGAAGATGAACCTATT  100
        ||||| |||||||||||| || | |||||||  | |||||||||||||
seq2  -CACTTC-ACCGTGTTTCAG-CCTTTGTCTCTT--GGAGATGAACCTATT  89

seq1  GGCACTTCGGTGATCTCAATAATGAGGGATGGAGAGAGAAGTTAACACTT  150
      |   |||||||||| |||||||||| ||||| ||||||||||| ||||| 
seq2  G--CCTTCGGTGATTTCAATAATGA-GGATGAAGAGAGAAGTT-ACACTG  135

seq1  GACCTCAGGGAGGTGTTTGCCTTTCCTGAGTGGGTTGTGAATAAAAATTA  200
      ||||||||||||||| ||||| ||||||||||||||| ||||||||||||
seq2  GACCTCAGGGAGGTG-TTGCC-TTCCTGAGTGGGTTGGGAATAAAAATTA  183

seq1  CGCGAGAATACATTCTAGAGGGATTCCTTTACTAACAAAAATACCTTGTT  250
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CGCGAGAATACATTCTAGAGGGATTCC-TTACTAACAAAAATACCTTGTT  232

seq1  TGTTTTTTTTTTAACTTTATTTTACTTTATATTGTAGATATATGTTTTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTTTTTAACTTTATTTTACTTTATATTGTAGATATATGTTTTCG  282

seq1  TTAGGGTTTTACTGCTGTGAACAGACACCATGGCCAAGGCAACTCTTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGTTTTACTGCTGTGAACAGACACCATGGCCAAGGCAACTCTTAGA  332

seq1  AGGATAGCATTTAATTGAGGCTGGCTTACAGGTTCTGAGATTCAGTCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAGCATTTAATTGAGGCTGGCTTACAGGTTCTGAGATTCAGTCCAT  382

seq1  TATTATCATGGCAGGAACATGGCAGCATCCAGGCAGGCATGGTGCAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCATGGCAGGAACATGGCAGCATCCAGGCAGGCATGGTGCAGGAG  432

seq1  GAGCTGAGAGTTCGACATCTTTATCTGAAGGCTGGTAGTAGAAGACTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGAGAGTTCGACATCTTTATCTGAAGGCTGGTAGTAGAAGACTCAC  482

seq1  TTCCAAGCAGCTAGGATGGGGGTTTTATAGCCCACACCCACAATGACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGCAGCTAGGATGGGGGTTTTATAGCCCACACCCACAATGACACA  532

seq1  CTTACTCCAATAGGGCCACACCTTCTAATAGTGCCATTCCCTGGGCCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTCCAATAGGGCCACACCTTCTAATAGTGCCATTCCCTGGGCCAAG  582

seq1  CATATAGAAACCATCACAGCAGGGTTTCATTCATATTGTAGTTCAAATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAGAAACCATCACAGCAGGGTTTCATTCATATTGTAGTTCAAATTG  632

seq1  TCCTGGAACTCATTCTGTAGTCCAAGCTGGCTTGGAATTTATGGCACCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAACTCATTCTGTAGTCCAAGCTGGCTTGGAATTTATGGCACCCT  682

seq1  TCCTACCTCAACCTCCTGAGTGCTAAGATGACAGGCATTGAACTGCTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACCTCAACCTCCTGAGTGCTAAGATGACAGGCATTGAACTGCTATG  732

seq1  CCAGGACCTCAACCAAATGTACTTGAAAGGATACTGAAGAAGTGACTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACCTCAACCAAATGTACTTGAAAGGATACTGAAGAAGTGACTCAT  782

seq1  GTGCATTTCTTCAAGTTGTGTGTGCATCATAAGGCACTGAGCAAATCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATTTCTTCAAGTTGTGTGTGCATCATAAGGCACTGAGCAAATCCTG  832

seq1  AACAATGGAGACACTTTGTGCCAAGCTGCTGGTGCCTGAGATAGCTCGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGGAGACACTTTGTGCCAAGCTGCTGGTGCCTGAGATAGCTCGGC  882

seq1  AGAGGTAAGGAGAGACCTTCTAGGGAATGACCTGACAAAAGGGTAGGGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTAAGGAGAGACCTTCTAGGGAATGACCTGACAAAAGGGTAGGGAG  932

seq1  AAAGGCCCTCTTGTCTGTGCAGAAGCACTCCCCAGATGGAGGAAAGGCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCCTCTTGTCTGTGCAGAAGCACTCCCCAGATGGAGGAAAGGCTT  982

seq1  CTGGAGCCTCTGGGACCAGCCAGCTGGAGTGACAGCTGGAGGAGCCACAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCCTCTGGGACCAGCCAGCTGGAGTGACAGCTGGAGGAGCCACAG  1032

seq1  GGCTGTGATGATGGATTTGGACAACGTCACTTTCTCATAAGGATTTGATG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGATGATGGATTTGGACAACGTCACTTTCTCATAAGGATTTGATG  1082

seq1  GAACACAAGGTTCCAAAGAGCCTGGATCATCTTGAAGATGATGGAATTC  1149
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACAAGGTTCCAAAGAGCCTGGATCATCTTGAAGATGATGGAATTC  1131

seq1: chr4_123690399_123691077
seq2: B6Ng01-070C09.g_67_745

seq1  GAATTCAAACCAATAGTCACCTAAGAGCTTTGTGACCTTGGCAAGTACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACCAATAGTCACCTAAGAGCTTTGTGACCTTGGCAAGTACCC  50

seq1  TCAGCTCTCTGACCCCAGAAGGGCTGGGCACATGAGGCTGGTGTGAGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCTCTGACCCCAGAAGGGCTGGGCACATGAGGCTGGTGTGAGGAT  100

seq1  TTCTGCTCTGAGTGAGGCACACAGAGAACCCTGTAAATTCTGTCTGGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTCTGAGTGAGGCACACAGAGAACCCTGTAAATTCTGTCTGGTTC  150

seq1  TCCTTTGGGCCACAGAGGGGTTTCCTCAACTCAGCTGAGAAGGGGACACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGGGCCACAGAGGGGTTTCCTCAACTCAGCTGAGAAGGGGACACT  200

seq1  TGAACTCATTATGTGGCCCAGGTTGGCCTTGAACCTGTGGCACTCCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCATTATGTGGCCCAGGTTGGCCTTGAACCTGTGGCACTCCTTCT  250

seq1  GCCACAGCCTCCTGAGGGCTAGGATTACAGGAGTGCACCATCACAGACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGCCTCCTGAGGGCTAGGATTACAGGAGTGCACCATCACAGACAG  300

seq1  CATTACTTATAGTACAAATTACACCCCTGCACCCTTTCCTTTGCTCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACTTATAGTACAAATTACACCCCTGCACCCTTTCCTTTGCTCTCTT  350

seq1  ACATTCTTCATTAAATATTTATTGGCTCATCTTGTGTCCGAGACACTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTTCATTAAATATTTATTGGCTCATCTTGTGTCCGAGACACTGTG  400

seq1  AGAGAGGTTAAGAACACAACTCAGTGAAAAACGGGAGGCTGGAGTCAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGTTAAGAACACAACTCAGTGAAAAACGGGAGGCTGGAGTCAACA  450

seq1  AGCAAGGAACATGCCAGGGTTCTATGAAGAACAGTGTGTTGTGTTTCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGAACATGCCAGGGTTCTATGAAGAACAGTGTGTTGTGTTTCATA  500

seq1  AAATGACAATATAATGCGGCAGAAGGGAGCACCTTAGCGGGCCCTGCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACAATATAATGCGGCAGAAGGGAGCACCTTAGCGGGCCCTGCCAA  550

seq1  AGGTGTTCTCCCCAAACAATCAAGCCATGAGACAGACCTAGTATAAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTTCTCCCCAAACAATCAAGCCATGAGACAGACCTAGTATAAAGAA  600

seq1  GGGTTATTGGAAGGAAAGAGGACCTGGAAAAAGGATAGAAGTGGGGGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTATTGGAAGGAAAGAGGACCTGGAAAAAGGATAGAAGTGGGGGTGG  650

seq1  AGAAGGACAGAGAGAAGGAGGGGAGAGGA  679
      |||||||||||||||||||||||||||||
seq2  AGAAGGACAGAGAGAAGGAGGGGAGAGGA  679