BAC Information

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BAC

Clone NameB6Ng01-070C22
Chromosome4 (Build37)
Map Location 124,824,941 - 124,984,313
singlet/doubletdoublet
Overlap genenone
Upstream gene1700057H15Rik, LOC100039332, Pou3f1, Utp11l, Fhl3, Sf3a3, LOC664991, Inpp5b, LOC100039433, Mtf1, Yrdc, Gm50, Epha10, Cdca8, 9930104L06Rik, Rspo1, Gnl2, Dnali1, Snip1, 2310005N01Rik, Zc3h12a
Downstream geneLOC100039298, Grik3, Ftl2, Csf3r, Mrps15, 1810007P19Rik, LOC100039645, Lsm10, Stk40, 2610027C15Rik, 1700029G01Rik, Thrap3, Mtap7d1, Trappc3, Col8a2, EG667193
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070C22.bB6Ng01-070C22.g
ACCDH888263DH888264
length3301,145
definitionDH888263|Mus musculus domesticus DNA, BAC clone: B6Ng01-070C22, 5' end.DH888264|Mus musculus domesticus DNA, BAC clone: B6Ng01-070C22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,983,984 - 124,984,313)(124,824,941 - 124,826,093)
sequence
ttagttgttagaaacctagggaggcaagccaggctggaggtggctgtgag
cacctctgaacctcaggggaccccaaagccacctcagaactcccacccac
tccagactcagctttcccaatggcctgaagagatgggctatgactaatgc
attaggactacttgggggttcagatagggccattcatccagactggagtt
gggaggaccagtttctagaatcttccaaagaaggttggctgtatttgcta
cttctaaaaaaaaaaaaaaagacttagtgtgtgtgtctgtgtatctgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gaattctgaaaacacccttgtctatcctccttctagaacatcaggttccc
cagctctgtcccctctacagtctctccagaagaagggtctgggggaatcc
gccttgccctgacttcccataatattcaaaccagagttcttcgcagttcc
tggagagacctactccccctaccccagaacatggggctcaaggtcagtgg
tagccactctccccccaccccccgccccaggccttgccctttatgtattg
agcttcctggctgaaccaaagccagtcaggaccctgggccaaggttagaa
ctaggaagcactaggaattgagggttggggtagcctggggtaggagggtc
ccagattgtaggatggaaaggcatgcattgtgtacttaccccatggcaat
ggctgcgagctctccaacctatgcagccactttctctctctctctctgcc
ccttggcacagactcttaaagcttctgcctgctgctgctcccagctgatg
ccagccgccaggcactctagcttatctgtgcccagtgctgcacaggcctg
ttgttttggctgattgatttatgattttcatttatcgatggagaggcttt
ctcaagaatgcatagctgcatactattggagctgggatttgaactcaggg
agacgattttctgttacaatgtttatgatacaatttctttaaagatttac
ctttgaaacaaaaccaaaaccaaaaattatatgtatccatgagtgtctat
atgtatctgagcacatgagtgcaggtccctgttagggccagaagagggca
ctagatgccctggaactagagtgactggaggtttgagctgtgctgggaac
cgaactcaggtcctgtgcaagaccagcaagagcaagtgctcttaactgtg
gagccttctctgtagctaaattacaatggaatcttagagactgtatctga
gcacagaatcatgtcttgggatgagactcttccagactcactgcttgtca
gaccttctccggcctcccactgcttcagcttagaacctgatgagccagga
gaagaaaggcaggaaaagaatgttccggagtattgaagagggaaggtaca
acgaatgaaggtgaccaagctaaccgtttattaaagcaccctact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_124983984_124984313
seq2: B6Ng01-070C22.b_51_380 (reverse)

seq1  ACACACACACACACACACACACACACACACACACAGATACACAGACACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACAGATACACAGACACAC  50

seq1  ACACTAAGTCTTTTTTTTTTTTTTTAGAAGTAGCAAATACAGCCAACCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAAGTCTTTTTTTTTTTTTTTAGAAGTAGCAAATACAGCCAACCTT  100

seq1  CTTTGGAAGATTCTAGAAACTGGTCCTCCCAACTCCAGTCTGGATGAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGAAGATTCTAGAAACTGGTCCTCCCAACTCCAGTCTGGATGAATG  150

seq1  GCCCTATCTGAACCCCCAAGTAGTCCTAATGCATTAGTCATAGCCCATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTATCTGAACCCCCAAGTAGTCCTAATGCATTAGTCATAGCCCATCT  200

seq1  CTTCAGGCCATTGGGAAAGCTGAGTCTGGAGTGGGTGGGAGTTCTGAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGCCATTGGGAAAGCTGAGTCTGGAGTGGGTGGGAGTTCTGAGGT  250

seq1  GGCTTTGGGGTCCCCTGAGGTTCAGAGGTGCTCACAGCCACCTCCAGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGGGGTCCCCTGAGGTTCAGAGGTGCTCACAGCCACCTCCAGCCT  300

seq1  GGCTTGCCTCCCTAGGTTTCTAACAACTAA  330
      ||||||||||||||||||||||||||||||
seq2  GGCTTGCCTCCCTAGGTTTCTAACAACTAA  330

seq1: chr4_124824941_124826093
seq2: B6Ng01-070C22.g_67_1211

seq1  GAATTCTGAAAACACCCTTGTCTATCCTCCTTCTAGAACATCAGGTTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAAAACACCCTTGTCTATCCTCCTTCTAGAACATCAGGTTCCC  50

seq1  CAGCTCTGTCCCCTCTACAGTCTCTCCAGAAGAAGGGTCTGGGGGAATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTGTCCCCTCTACAGTCTCTCCAGAAGAAGGGTCTGGGGGAATCC  100

seq1  GCCTTGCCCTGACTTCCCATAATATTCAAACCAGAGTTCTTCGCAGTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGCCCTGACTTCCCATAATATTCAAACCAGAGTTCTTCGCAGTTCC  150

seq1  TGGAGAGACCTACTCCCCCTACCCCAGAACATGGGGCTCAAGGTCAGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGACCTACTCCCCCTACCCCAGAACATGGGGCTCAAGGTCAGTGG  200

seq1  TAGCCACTCTCCCCCCACCCCCCGCCCCAGGCCTTGCCCTTTATGTATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCACTCTCCCCCCACCCCCCGCCCCAGGCCTTGCCCTTTATGTATTG  250

seq1  AGCTTCCTGGCTGAACCAAAGCCAGTCAGGACCCTGGGCCAAGGTTAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCTGGCTGAACCAAAGCCAGTCAGGACCCTGGGCCAAGGTTAGAA  300

seq1  CTAGGAAGCACTAGGAATTGAGGGTTGGGGTAGCCTGGGGTAGGAGGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAAGCACTAGGAATTGAGGGTTGGGGTAGCCTGGGGTAGGAGGGTC  350

seq1  CCAGATTGTAGGATGGAAAGGCATGCATTGTGTACTTACCCCATGGCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTGTAGGATGGAAAGGCATGCATTGTGTACTTACCCCATGGCAAT  400

seq1  GGCTGCGAGCTCTCCAACCTATGCAGCCACTTTCTCTCTCTCTCTCTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCGAGCTCTCCAACCTATGCAGCCACTTTCTCTCTCTCTCTCTGCC  450

seq1  CCTTGGCACAGACTCTTAAAGCTTCTGCCTGCTGCTGCTCCCAGCTGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGCACAGACTCTTAAAGCTTCTGCCTGCTGCTGCTCCCAGCTGATG  500

seq1  CCAGCCGCCAGGCACTCTAGCTTATCTGTGCCCAGTGCTGCACAGGCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCGCCAGGCACTCTAGCTTATCTGTGCCCAGTGCTGCACAGGCCTG  550

seq1  TTGTTTTGGCTGATTGATTTATGATTTTCATTTATCGATGGAGAGGCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGGCTGATTGATTTATGATTTTCATTTATCGATGGAGAGGCTTT  600

seq1  CTCAAGAATGCATAGCTGCATACTATTGGAGCTGGGATTTGAACTCAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGAATGCATAGCTGCATACTATTGGAGCTGGGATTTGAACTCAGGG  650

seq1  AGACGATTTTCTGTTACAATGTTTATGATACAATTTCTTTAAAGATTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGATTTTCTGTTACAATGTTTATGATACAATTTCTTTAAAGATTTAC  700

seq1  CTTTGAAACAAAACCAAAACCAAAAATTATATGTATCCATGAGTGTCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAACAAAACCAAAACCAAAAATTATATGTATCCATGAGTGTCTAT  750

seq1  ATGTATCTGAGCACATGAGTGCAGGTCCCTGTTAGGGCCAGAAGAGGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCTGAGCACATGAGTGCAGGTCCCTGTTAGGGCCAGAAGAGGGCA  800

seq1  CTAGATGCCCTGGAACTAGAGTGACTGGAGGTTTGAGCTGTGCTGGGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATGCCCTGGAACTAGAGTGACTGGAGGTTTGAGCTGTGCTGGGAAC  850

seq1  CGAACTCAGGTCCTGTGCAAGACCAGCAAGAGCAAGTGCTCTTAACTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACTCAGGTCCTGTGCAAGACCAGCAAGAGCAAGTGCTCTTAACTGTG  900

seq1  GAGCCTTCTCTGTAGCTAAATTACAATGGAATCTTAGAGACTGTATCTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTCTCTGTAGCTAAATTACAATGGAATCTTAGAGACTGTATCTGA  950

seq1  GCCACCAGAATCATGTCTTGGGATGAGACTCTCCCAAGACTCACTGCTTG  1000
      ||   ||||||||||||||||||||||||||| || ||||||||||||||
seq2  GC--ACAGAATCATGTCTTGGGATGAGACTCTTCC-AGACTCACTGCTTG  997

seq1  TCAGACCTTCTCCCGGCCTCCCACTGCCTTCAGCTTAGAAACCTGAGTGA  1050
      ||||||||||| |||||||||||||| ||||||||||| ||||||| |||
seq2  TCAGACCTTCT-CCGGCCTCCCACTG-CTTCAGCTTAG-AACCTGA-TGA  1043

seq1  GCAGGGAGAAGAGAGGCAGGAAGAAGGACATGTT-CGGAGTA-TGAGGAG  1098
      ||  |||||||| ||||||||| |||   ||||| ||||||| ||| |||
seq2  GCCAGGAGAAGAAAGGCAGGAA-AAG--AATGTTCCGGAGTATTGAAGAG  1090

seq1  GGAGGGTAGCAACAGAATGAGAGTAGCAAAAGCTAA-CGGTTATT-AAGC  1146
      ||| |||| |||| |||||| ||  |   ||||||| || ||||| ||||
seq2  GGAAGGTA-CAAC-GAATGA-AGGTGACCAAGCTAACCGTTTATTAAAGC  1137

seq1  A-CCTACT  1153
      | ||||||
seq2  ACCCTACT  1145