BAC Information

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BAC

Clone NameB6Ng01-070H22
Chromosome4 (Build37)15 (Build37)
Map Location 101,766,523 - 101,767,72378,428,576 - 78,428,811
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneRaver2, Jak1, E130102H24Rik, Ak3l1, LOC669460, Dnajc6, Leprot, Lepr, B020004J07Rik, LOC665362, C130073F10Rik, LOC384033, LOC381535, LOC332923, LOC100039834, LOC381536, LOC433739
Downstream genePde4b, Sgip1, Tctex1d1, Insl5, Wdr78
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070H22.bB6Ng01-070H22.g
ACCDH888485DH888486
length1,185163
definitionDH888485|Mus musculus domesticus DNA, BAC clone: B6Ng01-070H22, 5' end.DH888486|Mus musculus domesticus DNA, BAC clone: B6Ng01-070H22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(101,766,523 - 101,767,723)(78,428,576 - 78,428,811)
sequence
gaattcctagagaagacttctagatacaggcttttgttatcctcatgggt
taactctgggctgtctttgctgggaagggtgacttaggtttaatggttca
tttttattaccacagtcactcctgctggcctgagggcagtggcaattttc
ataagcatactggattggtacattggactgaggacagtgtcatctgccct
gagcatactggattggtacaactgcattggtacactgaacactaaagggt
atgttttcctggcaggtcctagagagccagtaggtgagaaagatgttgtg
agactagctgttgtgagactagcagatgttcaagcagactgacagtggga
aacacaaacaggtaactcaatccacagtgctttctctctctctctctctc
tctctctctctcacacacacacacacacacacacacacacacacacacac
acacacgaactccttggagaggttctttcatcccctcctgttggctgcca
ccctctcaccatgcagagaagagtgtccctcggagattgttccttaacaa
atgttaggaatggaaaagcatggagttttgttactctatttattggaaga
ttttctgagggaggaaagaaaactccatctgtgtctttgtctcatcatat
atccagccaattataaccacagagcaataattgtttctgaattcagcaat
taagatctaagaccagtaattgttagattacttgtaaagaggttacctac
ctatgcttcaaggatgtgcctgttgacttacttgtgactactaaaactcc
tccagggaaggttgtttttgcagtgtcatgatttgtaccagagtgaaaac
atctaataacaaaaatggtaggtttcctaaaaaggaaattaaaaaagcaa
agccctcctactacaatccttgacttttccaaatactttagagattgaag
ttttgaagatggccctgagagaggattagaactggaggtctggagttcat
cgttgagatgctagtgtcacagtgagtgtggacccagggaacatggcatg
acttcagatcatatggctcttctaagggtcatctgggtatgattcagcta
aacttcacatcatgctgttgacaaccactaagggtcttgaatagctgtga
attaagatttattcatgagaaacggtctggaaaat
aaactggacagttgtggcacaagcctttaatctcagcacttgggaggcag
aggcaggtggatctctaagttccaggccagcctgatccacagatcaagtt
ctagaacagccatgattacactgagaaacctgtccccaaaaaacagaaaa
ggaaggaaggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_101766523_101767723
seq2: B6Ng01-070H22.b_48_1232

seq1  GAATTCCTAGAGAAGACTTCTAGATACAGGCTTTTGTTATCCTCATGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGAGAAGACTTCTAGATACAGGCTTTTGTTATCCTCATGGGT  50

seq1  TAACTCTGGGCTGTCTTTGCTGGGAAGGGTGACTTAGGTTTAATGGTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTGGGCTGTCTTTGCTGGGAAGGGTGACTTAGGTTTAATGGTTCA  100

seq1  TTTTTATTACCACAGTCACTCCTGCTGGCCTGAGGGCAGTGGCAATTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTACCACAGTCACTCCTGCTGGCCTGAGGGCAGTGGCAATTTTC  150

seq1  ATAAGCATACTGGATTGGTACATTGGACTGAGGACAGTGTCATCTGCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCATACTGGATTGGTACATTGGACTGAGGACAGTGTCATCTGCCCT  200

seq1  GAGCATACTGGATTGGTACAACTGCATTGGTACACTGAACACTAAAGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATACTGGATTGGTACAACTGCATTGGTACACTGAACACTAAAGGGT  250

seq1  ATGTTTTCCTGGCAGGTCCTAGAGAGCCAGTAGGTGAGAAAGATGTTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTCCTGGCAGGTCCTAGAGAGCCAGTAGGTGAGAAAGATGTTGTG  300

seq1  AGACTAGCTGTTGTGAGACTAGCAGATGTTCAAGCAGACTGACAGTGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAGCTGTTGTGAGACTAGCAGATGTTCAAGCAGACTGACAGTGGGA  350

seq1  AACACAAACAGGTAACTCAATCCACAGTGCTTTCTCTCTCTCTCTCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAACAGGTAACTCAATCCACAGTGCTTTCTCTCTCTCTCTCTCTC  400

seq1  TCTCTCTCTCTCACACACACACACACACACACACACACACACACACACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCACACACACACACACACACACACACACACACACACACAC  450

seq1  ACACACGAACTCCTTGGAGAGGTTCTTTCATCCCCTCCTGTTGGCTGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACGAACTCCTTGGAGAGGTTCTTTCATCCCCTCCTGTTGGCTGCCA  500

seq1  CCCTCTCACCATGCAGAGAAGAGTGTCCCTCGGAGATTGTTCCTTAACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCACCATGCAGAGAAGAGTGTCCCTCGGAGATTGTTCCTTAACAA  550

seq1  ATGTTAGGAATGGAAAAGCATGGAGTTTTGTTACTCTATTTATTGGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAGGAATGGAAAAGCATGGAGTTTTGTTACTCTATTTATTGGAAGA  600

seq1  TTTTCTGAGGGAGGAAAGAAAACTCCATCTGTGTCTTTGTCTCATCATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGAGGGAGGAAAGAAAACTCCATCTGTGTCTTTGTCTCATCATAT  650

seq1  ATCCAGCCAATTATAACCACAGAGCAATAATTGTTTCTGAATTCAGCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGCCAATTATAACCACAGAGCAATAATTGTTTCTGAATTCAGCAAT  700

seq1  TAAGATCTAAGACCAGTAATTGTTAGATTACTTGTAAAGAGGTTACCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATCTAAGACCAGTAATTGTTAGATTACTTGTAAAGAGGTTACCTAC  750

seq1  CTATGCTTCAAGGATGTGCCTGTTGACTTACTTGTGACTACTAAAACTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCTTCAAGGATGTGCCTGTTGACTTACTTGTGACTACTAAAACTCC  800

seq1  TCCAGGGAAGGTTGTTTTTGCAGTGTCATGATTTGTACCAGAGTGAAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGAAGGTTGTTTTTGCAGTGTCATGATTTGTACCAGAGTGAAAAC  850

seq1  ATCTAATAACAAAAATGGTAGGTTTCCTAAAAAGGAAATTAAAAAAGCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAATAACAAAAATGGTAGGTTTCCTAAAAAGGAAATTAAAAAAGCAA  900

seq1  AGCCCTCCTACTACAATCCTTGACTTTTCCAAATACTTTAGAGATTGAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTCCTACTACAATCCTTGACTTTTCCAAATACTTTAGAGATTGAAG  950

seq1  TTTTGAAGATGGCCCTGAGAGAGGATTAAGAACTGGAGGTCTGGAGTTCA  1000
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTTTGAAGATGGCCCTGAGAGAGGATT-AGAACTGGAGGTCTGGAGTTCA  999

seq1  TCGTTGAGATGCTAGTGGTCACCAGTGAGTGTGGACCCAGGGAACATGGC  1050
      |||||||||||||||| |||| ||||||||||||||||||||||||||||
seq2  TCGTTGAGATGCTAGT-GTCA-CAGTGAGTGTGGACCCAGGGAACATGGC  1047

seq1  ATGACTTCAGATCATATGGCTC-TCTAAGGGGTCATCTGGGGTTATGATT  1099
      |||||||||||||||||||||| ||||| ||||||||||||  |||||||
seq2  ATGACTTCAGATCATATGGCTCTTCTAA-GGGTCATCTGGG--TATGATT  1094

seq1  CAGCTAAACTTCACATTCATGGCTGTTTGACAAACCACTAAGGGGTCTTG  1149
      ||||||||||||||| |||| |||| ||||| ||||||||| ||||||||
seq2  CAGCTAAACTTCACA-TCAT-GCTG-TTGAC-AACCACTAA-GGGTCTTG  1139

seq1  AAATAGCCTGTGAAATTAAGTATTTTATTCATGAGAAAACTGTCTGGAAA  1199
       ||||| ||||| |||||||   |||||||||||| |||| |||||||||
seq2  -AATAG-CTGTG-AATTAAG--ATTTATTCATGAG-AAACGGTCTGGAAA  1183

seq1  AT  1201
      ||
seq2  AT  1185

seq1: chr15_78428576_78428811
seq2: B6Ng01-070H22.g_91_237 (reverse)

seq1  CTTCCTTCCTTCCTTTCTTTTGTTTGTTCTCTCTCTCTCTCTCTCTCTCT  50
                                                        
seq2  --------------------------------------------------  0

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTATCCCCACCCCCTTT  100
                                  ||| |||          |||| 
seq2  ----------------------------CTTCCTT----------CCTTC  12

seq1  ATTTTTAGATTTTTGGAGACAGTGTTTCTCCATGTAGCCTTGACTGTCCT  150
       ||||  | ||||||| ||||| |||||||  ||||  | || |||| ||
seq2  CTTTTCTGTTTTTTGGGGACAG-GTTTCTCAGTGTAATCATGGCTGTTCT  61

seq1  GGAACTAGCTCTGTAGACCAGGTTGGCCTCAAACTCACAGAGACCTGCCT  200
       ||||| | ||||| || |||| ||||||  ||||   ||||| |  |||
seq2  AGAACTTGATCTGTGGATCAGGCTGGCCTGGAACT--TAGAGATCCACCT  109

seq1  GCCTCTGCCTCCCAAGTGCTGGGATTAAAGG--TGTGC  236
      ||||||||||||||||||||| |||||||||  |||||
seq2  GCCTCTGCCTCCCAAGTGCTGAGATTAAAGGCTTGTGC  147