BAC Information

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BAC

Clone NameB6Ng01-070J07
Chromosome4 (Build37)4 (Build37)
Map Location 145,304,105 - 145,305,325147,049,291 - 147,050,092
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349
Downstream geneLOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070J07.bB6Ng01-070J07.g
ACCDH888542DH888543
length1,2121,125
definitionDH888542|Mus musculus domesticus DNA, BAC clone: B6Ng01-070J07, 5' end.DH888543|Mus musculus domesticus DNA, BAC clone: B6Ng01-070J07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(145,304,105 - 145,305,325)(147,049,291 - 147,050,092)
sequence
gaattccaggaaagccagggctacacagaaaaccccagtcttgaaaaaca
aaaacaaaaacaaaaaacaaaacaacaacaacaaaccaaaaccaaaacaa
aacaaaacaaaaaaagcagccaggagatggcagcacatgcctttaatccc
aaaattcgggagtcagaggcaagcagaccttttgagtttgaggacaacct
ggtatatgcagcaaatctcagaacagccaaggctacacagagaaaccctg
tctagaagaaaaaaatcaataacaacaacaataataataaataaacaatt
ttaaaaagaaagtagtttatcttgccacttttgttataagatcttagcag
ttgtaaagagctaaacaactagctataagaacagtacgaagactatccaa
tgcccaagacgtttacagttagcctaatactgccacagtgaattatagat
cagcctgaaaagggacagtctcaggcagcataaacccgaggctcctggga
ctctgagagccagccatgtctgtgcagctgaaaacacagggaaaccagaa
gactgaaatggtaggcagagttcagttctcttgttctaggttctttagac
tgtaaatgaaaagaaaactcagttcagaattaatccactggatagggatt
tctagactatattgtagaattatagaactgaagagaaaaaaccaaaacag
tatggtaatatgaataggaatgtcccccataaggctcaaatatttgaatg
cttggtcattagggagtgccactacttaaagagattaggaggtatggcct
tgctggaggaagtgtgtcactaggggtggactttagggtttcagaagccc
aagccaggcccagtgactctctattttcccgatgcttgtggatctgaata
tagaactctcatttttcctgtaccacatgtctttacacaggctaccatgc
ttcctagccatgatgacaatgaactaaacctctaaactgtaagccagccc
agttaaatgcttttctttttaagaatcgttatgatagtggtgtttcttcc
cagcaatagaaaactgactaagaaacttaaggaagattaaaaattataga
aacctcattggtctccctaataatttttttcctccctccttcctttttcc
tcttccaacttctaagcaactactcatccttcctcatctctctgctgtgt
gtaccttcaatg
gaattctctgatgaattctcagactgctttttacagtaaagcatttgcca
cattcactgcatttgtaaggtttctctcctgtatgaattctctgatgaat
tctcagactgcttttttcagtaaagcatttgccacattcactgcatttgt
aaggtttctctcctgtatgaattctctgatgaattctcagactgcttttt
tcagtaaagcatttgccacattcagggcatttgtaaggtttctctcctgt
atgaattctctgatgaatagtaagattggattgttgggtaaagcatttgt
cacattcactgcatttgtaaggtttctctcctgtatgaattctctgatga
attctcagactgcctttttcagtaaagcatttgccacattcactgcattt
gtaaggtttctctcctgtatgaattctctgatgaatactaagacaggatt
gttgggtaaagcatttgtcacattcactgcatttgtaaggtttctctcct
gtatgaattctctgatgaatactaagattggattgtttggtaaagcattt
gtcacattcactgcatttgtaaggtttctctcctgtatgaattctctgat
gcatagtaagattgaatttgtttttaaaacatttgtcacattcactacat
ttgtaaattttctcttctgtatgaatttcctgatgaatactaagatggat
ctgatgggtaaagcatttgtcacttttactactttcgtaaggtttctttc
catgataaattctctgctgactttgtagtttttctctctgggtaagatat
ttgtgaaattcactacatttgtaagggttccctgcaatattgtctttttt
caccatgactttatgtttagaaacaaaaaccttctctaattctgcatttc
ggttgtgttttttcttctgcatgttaattccttgatgagactaatggtag
aaacaaacttaaactgtttacagagtcatgtattgcaacttctttagtgt
tcctgggcttaagtcttttttggttcgagattgagagcatcaactgtgaa
tagctttgtaggtttacctgaggattcagaatgaccttgctaagcctgtc
cattgagacttctctgaatatcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145304105_145305325
seq2: B6Ng01-070J07.b_44_1255

seq1  GAATTCCAGGAAAGCCAGGGCTACACAGAAAACCCCAGTCTTGAAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAAAGCCAGGGCTACACAGAAAACCCCAGTCTTGAAAAACA  50

seq1  AAAACAAAAACAAAAAACAAAACAACAACAACAAACCAAAACCAAAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAACAAAAAACAAAACAACAACAACAAACCAAAACCAAAACAA  100

seq1  AACAAAACAAAAAAAGCAGCCAGGAGATGGCAGCACATGCCTTTAATCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAAAAAAAGCAGCCAGGAGATGGCAGCACATGCCTTTAATCCC  150

seq1  AAAATTCGGGAGTCAGAGGCAAGCAGACCTTTTGAGTTTGAGGACAACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCGGGAGTCAGAGGCAAGCAGACCTTTTGAGTTTGAGGACAACCT  200

seq1  GGTATATGCAGCAAATCTCAGAACAGCCAAGGCTACACAGAGAAACCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATATGCAGCAAATCTCAGAACAGCCAAGGCTACACAGAGAAACCCTG  250

seq1  TCTAGAAGAAAAAAATCAATAACAACAACAATAATAATAAATAAACAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAGAAAAAAATCAATAACAACAACAATAATAATAAATAAACAATT  300

seq1  TTAAAAAGAAAGTAGTTTATCTTGCCACTTTTGTTATAAGATCTTAGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGAAAGTAGTTTATCTTGCCACTTTTGTTATAAGATCTTAGCAG  350

seq1  TTGTAAAGAGCTAAACAACTAGCTATAAGAACAGTACGAAGACTATCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAGAGCTAAACAACTAGCTATAAGAACAGTACGAAGACTATCCAA  400

seq1  TGCCCAAGACGTTTACAGTTAGCCTAATACTGCCACAGTGAATTATAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAAGACGTTTACAGTTAGCCTAATACTGCCACAGTGAATTATAGAT  450

seq1  CAGCCTGAAAAGGGACAGTCTCAGGCAGCATAAACCCGAGGCTCCTGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGAAAAGGGACAGTCTCAGGCAGCATAAACCCGAGGCTCCTGGGA  500

seq1  CTCTGAGAGCCAGCCATGTCTGTGCAGCTGAAAACACAGGGAAACCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGAGCCAGCCATGTCTGTGCAGCTGAAAACACAGGGAAACCAGAA  550

seq1  GACTGAAATGGTAGGCAGAGTTCAGTTCTCTTGTTCTAGGTTCTTTAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAAATGGTAGGCAGAGTTCAGTTCTCTTGTTCTAGGTTCTTTAGAC  600

seq1  TGTAAATGAAAAGAAAACTCAGTTCAGAATTAATCCACTGGATAGGGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATGAAAAGAAAACTCAGTTCAGAATTAATCCACTGGATAGGGATT  650

seq1  TCTAGACTATATTGTAGAATTATAGAACTGAAGAGAAAAAACCAAAACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGACTATATTGTAGAATTATAGAACTGAAGAGAAAAAACCAAAACAG  700

seq1  TATGGTAATATGAATAGGAATGTCCCCCATAAGGCTCAAATATTTGAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTAATATGAATAGGAATGTCCCCCATAAGGCTCAAATATTTGAATG  750

seq1  CTTGGTCATTAGGGAGTGCCACTACTTAAAGAGATTAGGAGGTATGGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCATTAGGGAGTGCCACTACTTAAAGAGATTAGGAGGTATGGCCT  800

seq1  TGCTGGAGGAAGTGTGTCACTAGGGGTGGACTTTAGGGTTTCAGAAGCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGAGGAAGTGTGTCACTAGGGGTGGACTTTAGGGTTTCAGAAGCCC  850

seq1  AAGCCAGGCCCAGTGACTCTCTATTTTCCCGATGCTTGTGGATCTGAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGGCCCAGTGACTCTCTATTTTCCCGATGCTTGTGGATCTGAATA  900

seq1  TAGAACTCTCATTTTTCCTGTACCACAATGTCTTTACACAGGCTACCATG  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TAGAACTCTCATTTTTCCTGTACCAC-ATGTCTTTACACAGGCTACCATG  949

seq1  CTTCCTAGCCATGATGACAATGAACTAAACCTCTAAAACTGTAAGCCAGC  1000
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTTCCTAGCCATGATGACAATGAACTAAACCTCT-AAACTGTAAGCCAGC  998

seq1  CACAGTTAAATGCTTTCCTTTTTAAGAATCGTTATGATAGTGGTGTTTCT  1050
      | |||||||||||||| |||||||||||||||||||||||||||||||||
seq2  C-CAGTTAAATGCTTTTCTTTTTAAGAATCGTTATGATAGTGGTGTTTCT  1047

seq1  TCACAGCAATAGAACACTGACTAAGACACTT-AGGAAGATT-AAAATTAT  1098
      || ||||||||||| ||||||||||| |||| ||||||||| ||||||||
seq2  TCCCAGCAATAGAAAACTGACTAAGAAACTTAAGGAAGATTAAAAATTAT  1097

seq1  AGAAACGTCATTGGGTCTCCCTAATTA-TTTTTTCCTCCCTCCTTTCTTT  1147
      |||||| ||||| |||||||||||| | ||||||||||||||||| ||||
seq2  AGAAACCTCATT-GGTCTCCCTAATAATTTTTTTCCTCCCTCCTTCCTTT  1146

seq1  TTCTCTCTTCCCAACTTTCCTTAGCCATACCTACTCTATCCTTCCTCATC  1197
      ||| ||||| |||||||  || |||   | |||||| |||||||||||||
seq2  TTC-CTCTT-CCAACTT--CTAAGC---AACTACTC-ATCCTTCCTCATC  1188

seq1  TCTCTGCTGT-TGTACCTTTCAATG  1221
      |||||||||| |||||| |||||||
seq2  TCTCTGCTGTGTGTACC-TTCAATG  1212

seq1: chr4_147049291_147050092
seq2: B6Ng01-070J07.g_409_1190

seq1  CTGATGAATTCTCAGACTGCTTTTTTCAGTAAAGCATTTGCCACATTCAC  50
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTGATGAATTCTCAGACTGCCTTTTTCAGTAAAGCATTTGCCACATTCAC  50

seq1  TGCATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGAATTCTCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||| || |||
seq2  TGCATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGAATACTAAGA  100

seq1  CTGCTTTTTTCAGTAAAGCATTTGCCACATTCACTGCATTTGTAAGGTTT  150
      | |  || ||  |||||||||||| |||||||||||||||||||||||||
seq2  CAGGATTGTTGGGTAAAGCATTTGTCACATTCACTGCATTTGTAAGGTTT  150

seq1  CTCTCCTGTATGAATTCTCTGATGAATTCTCAGACTGGTTTTATCAGTAA  200
      ||||||||||||||||||||||||||| || ||| ||| ||  |  ||||
seq2  CTCTCCTGTATGAATTCTCTGATGAATACTAAGATTGGATTGTTTGGTAA  200

seq1  AGCATTTGCCACATTCACTGCATTTGTAAGGTTTCTCTCCTTTATGAATT  250
      |||||||| |||||||||||||||||||||||||||||||| ||||||||
seq2  AGCATTTGTCACATTCACTGCATTTGTAAGGTTTCTCTCCTGTATGAATT  250

seq1  CTCTGATGCATAGTAAGATTGAATTTGTTTTTAAAACATTTGTCACATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATGCATAGTAAGATTGAATTTGTTTTTAAAACATTTGTCACATTC  300

seq1  ACTACATTTGTAAATTTTCTCTTCTGTATGAATTCCCTGATGAATACTAA  350
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACTACATTTGTAAATTTTCTCTTCTGTATGAATTTCCTGATGAATACTAA  350

seq1  GATGGATCTGATGGGTAAAGCATTTGTCACTTTTACTACTTTCGTAAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATCTGATGGGTAAAGCATTTGTCACTTTTACTACTTTCGTAAGGT  400

seq1  TTCTTTCCATGATAAATTCTCTGCTGACTTTGTAGTTTTTCTCTCTGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCCATGATAAATTCTCTGCTGACTTTGTAGTTTTTCTCTCTGGGT  450

seq1  AAGATATTTGTGAAATTCACTACATTTGTAAGGGTTCCCTGCAATATTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTTGTGAAATTCACTACATTTGTAAGGGTTCCCTGCAATATTGT  500

seq1  CTTTTTTCACCATGACTTTATGTTTAGAAACAAAAATCTTGTCTAATTCT  550
      |||||||||||||||||||||||||||||||||||| ||| |||||||||
seq2  CTTTTTTCACCATGACTTTATGTTTAGAAACAAAAACCTTCTCTAATTCT  550

seq1  GCATTTCGGTTGTGTTTTTTCTTCTGCATGTTAATTCCTTGATTGAGACT  600
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GCATTTCGGTTGTGTTTTTTCTTCTGCATGTTAATTCCTTGA-TGAGACT  599

seq1  AATGGTAGAAAACAAACTTAAACTGTTTACAGAGTCATTGTATTTGCAAA  650
      |||||||| |||||||||||||||||||||||||||| |||| |||| ||
seq2  AATGGTAG-AAACAAACTTAAACTGTTTACAGAGTCA-TGTA-TTGC-AA  645

seq1  CTTCTTTAGTGTTCCTGGGCTTAAGTCTTTTTTGGGTCGAGAATTGAAGA  700
      ||||||||||||||||||||||||||||||||||| ||||| |||| |||
seq2  CTTCTTTAGTGTTCCTGGGCTTAAGTCTTTTTTGGTTCGAG-ATTG-AGA  693

seq1  GCATCAGAGCTGTGATTAGTTTTGTAAGGTGTACACTGGAGGGATTCAAG  750
      |||||  | |||||| ||| ||||| |||| ||| |||   |||||| ||
seq2  GCATC--AACTGTGAATAGCTTTGT-AGGTTTAC-CTG--AGGATTC-AG  736

seq1  AATGACATTGCTAAGCTTGTCCCATTTAGAAGACTTCTCTTGAATATTCA  800
      |||||| ||||||||| ||| |||||    ||||||||| |||||| |||
seq2  AATGACCTTGCTAAGCCTGT-CCATT---GAGACTTCTC-TGAATA-TCA  780

seq1  TG  802
      ||
seq2  TG  782