BAC Information

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BAC

Clone NameB6Ng01-070N22
Chromosome4 (Build37)
Map Location 66,244,308 - 66,405,950
singlet/doubletdoublet
Overlap geneLOC667499
Upstream geneAstn2, Trim32
Downstream geneTlr4, LOC100039379, Hmgb1-rs18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070N22.bB6Ng01-070N22.g
ACCDH888732DH888733
length7461,093
definitionDH888732|Mus musculus domesticus DNA, BAC clone: B6Ng01-070N22, 5' end.DH888733|Mus musculus domesticus DNA, BAC clone: B6Ng01-070N22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,244,308 - 66,244,986)(66,404,823 - 66,405,950)
sequence
gaattcagtaaaaaattggagatggagatgcacttgaacccctttaccct
gaagcagaactgagtagtgtggtcttcttatagctctaagtactatcaca
ggtttcattggccgtgttgtttttcactctggtttcagtatattcatttg
taaatgagtgtgactagtgtaattattcaacaaggaaggagtcttggata
ataaagcagctttcaggagttctggagagtggggaaatggatttgaatga
ttttggagcagggtagttaagtagtttaccactgaactatacttccagtt
tctgctttcattcttcatgggtagagtctcaaaaagataccaaggttgtc
tattttatagttatttttctttttaatcttttgcagaaatcataatctaa
tgacagtaggttttttgtttataaatatagaactgggatcatgtagtgtt
agagcaataaaagaccatggaaatcacctcttctgattccttcccatttc
agataaccctgccctgatccatccacacaggtgaagtaactcattcaaag
cttctctggcaactttagggcctgccatttaagtaatctttgaaaattta
atttgctctctctctctctctctctctctctctctctctctctctctctc
tctctctctctctctctctctcagatatatatatttataatcgagctctc
tcaccaccgagagcgcgtttctctctctctctctcatatacacaca
gaattcactgatgaggattctaagtttcaacagcatgaaatttctcaaat
tataaagcaaataataggtagagatgatcctgctttggcaggtgctgagg
gttattcttgggctggacaatggaactcaggggtggcacaaatctcctag
gagttgggtgtaaccttggaaacatggcaaatacggaattgtgatgggaa
gttaggcagtgatgtggccatacaatgtaaacccagggaactgatggttg
ctcagggcagctgggcagggctcacaaggactaaatagtttactttctat
ttaaaaatgaaaaaagaaaacaaatgagccctagagagaaagaaagaagg
aaggaaaaaggaacaatagacagaagaaagaaagaaagaaagaaagaaag
agagagagagagagagagagagagagagagagaaagaaagaaagaaagaa
agaaagaaagaaaagaaagaaagaaggaaaggaatgaaggaagggagaga
gagagagagagagagagagagaaggaaaatagaacaaatcatgagctttt
gagtatgtaagtccagctcactactgggtatgtgtaaaacaagcattatt
tagagagtgggtatttggttcccattttcaaatctggaaatggaggttta
gtaggagagtaaaccctgccttaatattatacaggtaccctataagaaac
agcagttataaataccaaaattctttagcatatcttatctttgagttgag
ttttaaaatcccacttggtttccattaatatcaacagtaacatttgctta
attgtctctaagtaattttttattggatattttatttacagttcaaatgt
tttcccctttcccatttccccatctcctggaaaccccctatcacaccttc
ctcacttgcttctatgaggtgttcctcaccacccactctaaatgttttcc
tctttcctggaagatagtgcctacactattggctacatagaatatcaggg
acacagatggctaaggcagctaagaagtgcatggggcccttcgtcgagcg
cacggaatagtaggtgcacaggcgctgacacgtcagctaccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_66244308_66244986
seq2: B6Ng01-070N22.b_46_791

seq1  GAATTCAGTAAAAAATTGGAGATGGAGATGCACTTGAACCCCTTTACCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAAAAAATTGGAGATGGAGATGCACTTGAACCCCTTTACCCT  50

seq1  GAAGCAGAACTGAGTAGTGTGGTCTTCTTATAGCTCTAAGTACTATCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGAACTGAGTAGTGTGGTCTTCTTATAGCTCTAAGTACTATCACA  100

seq1  GGTTTCATTGGCCGTGTTGTTTTTCACTCTGGTTTCAGTATATTCATTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCATTGGCCGTGTTGTTTTTCACTCTGGTTTCAGTATATTCATTTG  150

seq1  TAAATGAGTGTGACTAGTGTAATTATTCAACAAGGAAGGAGTCTTGGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAGTGTGACTAGTGTAATTATTCAACAAGGAAGGAGTCTTGGATA  200

seq1  ATAAAGCAGCTTTCAGGAGTTCTGGAGAGTGGGGAAATGGATTTGAATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCAGCTTTCAGGAGTTCTGGAGAGTGGGGAAATGGATTTGAATGA  250

seq1  TTTTGGAGCAGGGTAGTTAAGTAGTTTACCACTGAACTATACTTCCAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAGCAGGGTAGTTAAGTAGTTTACCACTGAACTATACTTCCAGTT  300

seq1  TCTGCTTTCATTCTTCATGGGTAGAGTCTCAAAAAGATACCAAGGTTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTTCATTCTTCATGGGTAGAGTCTCAAAAAGATACCAAGGTTGTC  350

seq1  TATTTTATAGTTATTTTTCTTTTTAATCTTTTGCAGAAATCATAATCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATAGTTATTTTTCTTTTTAATCTTTTGCAGAAATCATAATCTAA  400

seq1  TGACAGTAGGTTTTTTGTTTATAAATATAGAACTGGGATCATGTAGTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTAGGTTTTTTGTTTATAAATATAGAACTGGGATCATGTAGTGTT  450

seq1  AGAGCAATAAAAGACCATGGAAATCACCTCTTCTGATTCCTTCCCATTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAATAAAAGACCATGGAAATCACCTCTTCTGATTCCTTCCCATTTC  500

seq1  AGATAACCCTGCCCTGATCCATCCACACAGGTGAAGTAACTCATTCAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAACCCTGCCCTGATCCATCCACACAGGTGAAGTAACTCATTCAAAG  550

seq1  CTTCTCTGGCAACTTTAGGGCCTGCCATTTAAGTAATCTTTGAAAATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTGGCAACTTTAGGGCCTGCCATTTAAGTAATCTTTGAAAATTTA  600

seq1  ATTTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  650

seq1  CCTCTCTCTCTCTCTCTCTCACACACACA---------------------  679
       ||||||||||||||||||| || | | |                     
seq2  TCTCTCTCTCTCTCTCTCTCTCAGATATATATATTTATAATCGAGCTCTC  700

seq1  ----------------------------------------------  679
                                                    
seq2  TCACCACCGAGAGCGCGTTTCTCTCTCTCTCTCTCATATACACACA  746

seq1: chr4_66404823_66405950
seq2: B6Ng01-070N22.g_67_1159 (reverse)

seq1  TGGGTAGCTGGCGGTAGTCAGCCGCCTGTGCACCCTACCTACTCCGGTGC  50
      |||||||||| ||   ||||| |||||||||| |||| ||| ||| ||||
seq2  TGGGTAGCTGACG--TGTCAG-CGCCTGTGCA-CCTA-CTATTCC-GTGC  44

seq1  TGCTCGGACCGGAAGGGGGCCCCACTGCCACTTCTTAAGCTGGCCTTAAG  100
       |||| |||  |||  |||||||| || |||||||| |||| ||||| ||
seq2  -GCTC-GAC--GAA--GGGCCCCA-TG-CACTTCTT-AGCT-GCCTT-AG  83

seq1  CCATCTGGTTGTCCCTTGATATTCCTATTGTAGCCAATAGTGGTAGGGCA  150
      |||||||  |||||| ||||||| ||| ||||||||||||| ||| ||||
seq2  CCATCTG--TGTCCC-TGATATT-CTA-TGTAGCCAATAGT-GTA-GGCA  126

seq1  CCTATTCTTCCCAGGAAAGAGGGAAAAACATTTAGAGTGGGTGGGTGGAG  200
       ||| |||| ||||||||||||  ||||||||||||||||||||   |||
seq2  -CTA-TCTT-CCAGGAAAGAGG--AAAACATTTAGAGTGGGTGG--TGAG  169

seq1  GAACACCCTCATAGAAGCAAGTGGAGGGAAGGTGTGATAGGGGGTTTCCA  250
      ||||| |||||||||||||||||   ||||||||||||||||||||||||
seq2  GAACA-CCTCATAGAAGCAAGTG--AGGAAGGTGTGATAGGGGGTTTCCA  216

seq1  GGAGATGGGGAAATGGGGAAAGGGGAAAACATTTGAACTGTAAATAAAAT  300
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGAGATGGGGAAAT-GGGAAAGGGGAAAACATTTGAACTGTAAATAAAAT  265

seq1  ATCCAATAAAAAATTACTTAGAGACAATTAAGCAAATGTTACTGTTGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATAAAAAATTACTTAGAGACAATTAAGCAAATGTTACTGTTGATA  315

seq1  TTAATGGAAACCAAGTGGGATTTTAAAACTCAACTCAAAGATAAGATATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGAAACCAAGTGGGATTTTAAAACTCAACTCAAAGATAAGATATG  365

seq1  CTAAAGAATTTTGGTATTTATAACTGCTGTTTCTTATAGGGTACCTGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGAATTTTGGTATTTATAACTGCTGTTTCTTATAGGGTACCTGTAT  415

seq1  AATATTAAGGCAGGGTTTACTCTCCTACTAAACCTCCATTTCCAGATTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAAGGCAGGGTTTACTCTCCTACTAAACCTCCATTTCCAGATTTG  465

seq1  AAAATGGGAACCAAATACCCACTCTCTAAATAATGCTTGTTTTACACATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGGAACCAAATACCCACTCTCTAAATAATGCTTGTTTTACACATA  515

seq1  CCCAGTAGTGAGCTGGACTTACATACTCAAAAGCTCATGATTTGTTCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTAGTGAGCTGGACTTACATACTCAAAAGCTCATGATTTGTTCTAT  565

seq1  TTTCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTTCCTTCATTCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTTCCTTCATTCCTT  615

seq1  TCCTTCTTTCTTTCTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTTTCTTTCTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCT  665

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTCTTTCTTTCTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTCTTTCTTTCTTTCT  715

seq1  TTCTTCTGTCTATTGTTCCTTTTTCCTTCCTTCTTTCTTTCTCTCTAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTGTCTATTGTTCCTTTTTCCTTCCTTCTTTCTTTCTCTCTAGGG  765

seq1  CTCATTTGTTTTCTTTTTTCATTTTTAAATAGAAAGTAAACTATTTAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTGTTTTCTTTTTTCATTTTTAAATAGAAAGTAAACTATTTAGTC  815

seq1  CTTGTGAGCCCTGCCCAGCTGCCCTGAGCAACCATCAGTTCCCTGGGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGAGCCCTGCCCAGCTGCCCTGAGCAACCATCAGTTCCCTGGGTTT  865

seq1  ACATTGTATGGCCACATCACTGCCTAACTTCCCATCACAATTCCGTATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTATGGCCACATCACTGCCTAACTTCCCATCACAATTCCGTATTT  915

seq1  GCCATGTTTCCAAGGTTACACCCAACTCCTAGGAGATTTGTGCCACCCCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTTTCCAAGGTTACACCCAACTCCTAGGAGATTTGTGCCACCCCT  965

seq1  GAGTTCCATTGTCCAGCCCAAGAATAACCCTCAGCACCTGCCAAAGCAGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCATTGTCCAGCCCAAGAATAACCCTCAGCACCTGCCAAAGCAGG  1015

seq1  ATCATCTCTACCTATTATTTGCTTTATAATTTGAGAAATTTCATGCTGTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTCTACCTATTATTTGCTTTATAATTTGAGAAATTTCATGCTGTT  1065

seq1  GAAACTTAGAATCCTCATCAGTGAATTC  1128
      ||||||||||||||||||||||||||||
seq2  GAAACTTAGAATCCTCATCAGTGAATTC  1093