BAC Information

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BAC

Clone NameB6Ng01-071C15
Chromosome4 (Build37)
Map Location 134,577,462 - 134,739,421
singlet/doubletdoublet
Overlap geneRunx3
Upstream geneAim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1, Ldlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2
Downstream geneClic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071C15.bB6Ng01-071C15.g
ACCDH888937DH888938
length1,1931,195
definitionDH888937|Mus musculus domesticus DNA, BAC clone: B6Ng01-071C15, 5' end.DH888938|Mus musculus domesticus DNA, BAC clone: B6Ng01-071C15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,738,229 - 134,739,421)(134,577,462 - 134,578,666)
sequence
gaattcccatttttattttaaaagagtggttaagaattactttaagcaga
ctgggcgtggtggtacacacctttagtcccagcactcgggaggcagaggc
aagcggatttctgagttcgaggccagcctgatctacaaagtgagttccaa
gacagccagggctacacagagaaaccctatcttgaaaaagaccaaaccaa
accgaaacaaaccaaaacaaaccaaaccaaaacaaaagaattactttaag
caatctgtatgtatgcttcaactttgctctttcctgtcaatactgcactg
gctgtcctgggttttttgtttttgcttttgtaacactgtataaacattag
agtcagtttgcaacatctccaacaatatacttgcatcttgattgggatcg
cattgaatctatagttagaaaaaactgatatcattaaaaaattttgccta
ttttaatttaatgtgtgtttgtgtgcatgaatgtccgtgttttccagcac
ggcaaatgacagcattgatgctgactctgtcacttggacaacgcctgctc
tagctcatcatggcctcaccttgaccaaaggcatcagccatgaccctgtt
tccaagtcaggacacatcctgaggttcccaggacacaaagctggggagac
accacgccgtacacaagatagcactgtacacacagccaggtggaaggttc
agccggcatctcacatacataggcacatgtgtgtatacatacatatacat
aaatgcacacacgcacacaaatgggcaaacacatatgcctccacacacac
aggcacacatacatatgtgcatacacacaagcatgcacactcatgcatac
ctctccacatatgcacacatacatatacaaccaggaaaacaagccgttct
ctaaagtgaaagggctataaacagcctttcttctctgtctgtctgtctgt
ctgtctgtctgtctgtctgtctgtctgtctgtcatatctattctgtctat
ctacccatccatccatccatccaccccacctactacttacataccgatct
atcatcattatttatatatctctatcatccatttatccttttcctccttt
tctttttgagacagattctgtgagcccagcctgccttgaacttccttatg
ctggaatgacctgttctctgattcttctgcctctgcctcccag
gaattcagacctgataactgaagcatcagccgccattttggaacacgaag
ttacctatagcaaagatgaagccatgtactgaggctggcaaaggagaaag
aaataagaaacagagatgcggcaccatcagcttctacacttgagcccttg
cttcctgaccaatgggacacaaaccttctgttgtagtcagggttaccgtt
gctgtaaagaaaaaccatgaccaaacttagggaggaatgggtttatttgt
ttcacacttccacattgctgttcatcatcagaggaagtcaggacaggaac
ttagacatggcaaggacctgaaggcaggagccatggaaggttgctgctca
ctggtttgctcagcctgcttgttatagaaccaaggaccagcatcccaggg
atggatccgcccacaacggactggacccgcccacatcaatgactaattaa
gaaaatgtgctacaggttagcccacagcctgatcttacgaaggcattttc
ccaacttagactccctcctctcagatgtctacagctcgtgtcaagttgac
ataaagctactcagcacaccttcctcttgttcggcccacggtctctgagg
tttgcaggagcagtcaaacccagtctgatgcactgactcagttttgctcc
tccccttctggacccgcaggggacccgtgctctggggaggtcacttgctg
cctctcactctacagcatctgtcctgcagccttaggcgtgtcacttgccc
caacccatccctgctttcctttgcaggccccccattgcgctcactctccc
agatccctctacccaccttgcatacagcagtcacttcttgagggctgagg
gctgctcgcagctcagagtagagctcactttcagagtcaatgccagatgc
catgcgaaacgtttcatccgtgcccataagcagggactttcgttgtccct
gttcccactctgactctcagagcgactatatctctcctgtcttctttgca
tctcagacattagccaaatcaccttgaaaccccaggtcccttcccagccg
agcatctgggtatctgccacaccagccactgctcctggttatatgaggct
ctgctgatacttccaataaaaaatatatctttttttttttagatgtgttc
ttgaatcaaaggcaattccgaacctagcaggtgtaactgttcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_134738229_134739421
seq2: B6Ng01-071C15.b_53_1236 (reverse)

seq1  CTGGGAGGCAGAGGCAGGAGGATCAGGAGAACAAGGTCATCTCCAGCACT  50
      ||||||||||||||||| || |||| |||||| ||||||| |||||||  
seq2  CTGGGAGGCAGAGGCAGAAGAATCA-GAGAAC-AGGTCAT-TCCAGCATA  47

seq1  AGTGAGTTCCAGACCAGCCTGGGCTACACGAAATCCTGTCTCAAAAAAGA  100
      ||  ||||| ||  ||| ||||||| |||  ||| ||||||| |||||||
seq2  AGGAAGTTCAAG-GCAGGCTGGGCT-CACAGAAT-CTGTCTC-AAAAAGA  93

seq1  AAAGGAGAGAAAAGATAAATAGATAGATAGAGATATATAAATAAATAGAT  150
      |||||||  ||| ||||||| ||| |||||||||||||||||||   |||
seq2  AAAGGAGGAAAAGGATAAATGGAT-GATAGAGATATATAAATAA--TGAT  140

seq1  GATAGATAGGTATGTAAGTAGGTAGGT-GGGTGGATGGATGGATGGATGG  199
      ||||||| |||||||||||| |||||| ||||||||||||||||||||||
seq2  GATAGATCGGTATGTAAGTA-GTAGGTGGGGTGGATGGATGGATGGATGG  189

seq1  GTAGATAGACAG-ATAGATATGACAGACAGACAGACAGACAGACAGACAG  248
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTAGATAGACAGAATAGATATGACAGACAGACAGACAGACAGACAGACAG  239

seq1  ACAGACAGACAGACAGACAGAGAAGAAAGGCTGTTTATAGCCCTTTCACT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGACAGACAGACAGAGAAGAAAGGCTGTTTATAGCCCTTTCACT  289

seq1  TTAGAGAACGGCTTGTTTTCCTGGTTGTATATGTATGTGTGCATATGTGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAACGGCTTGTTTTCCTGGTTGTATATGTATGTGTGCATATGTGG  339

seq1  AGAGGTATGCATGAGTGTGCATGCTTGTGTGTATGCACATATGTATGTGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTATGCATGAGTGTGCATGCTTGTGTGTATGCACATATGTATGTGT  389

seq1  GCCTGTGTGTGTGGAGGCATATGTGTTTGCCCATTTGTGTGCGTGTGTGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGTGTGTGGAGGCATATGTGTTTGCCCATTTGTGTGCGTGTGTGC  439

seq1  ATTTATGTATATGTATGTATACACACATGTGCCTATGTATGTGAGATGCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGTATATGTATGTATACACACATGTGCCTATGTATGTGAGATGCC  489

seq1  GGCTGAACCTTCCACCTGGCTGTGTGTACAGTGCTATCTTGTGTACGGCG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAACCTTCCACCTGGCTGTGTGTACAGTGCTATCTTGTGTACGGCG  539

seq1  TGGTGTCTCCCCAGCTTTGTGTCCTGGGAACCTCAGGATGTGTCCTGACT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCTCCCCAGCTTTGTGTCCTGGGAACCTCAGGATGTGTCCTGACT  589

seq1  TGGAAACAGGGTCATGGCTGATGCCTTTGGTCAAGGTGAGGCCATGATGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACAGGGTCATGGCTGATGCCTTTGGTCAAGGTGAGGCCATGATGA  639

seq1  GCTAGAGCAGGCGTTGTCCAAGTGACAGAGTCAGCATCAATGCTGTCATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGCAGGCGTTGTCCAAGTGACAGAGTCAGCATCAATGCTGTCATT  689

seq1  TGCCGTGCTGGAAAACACGGACATTCATGCACACAAACACACATTAAATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGTGCTGGAAAACACGGACATTCATGCACACAAACACACATTAAATT  739

seq1  AAAATAGGCAAAATTTTTTAATGATATCAGTTTTTTCTAACTATAGATTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGGCAAAATTTTTTAATGATATCAGTTTTTTCTAACTATAGATTC  789

seq1  AATGCGATCCCAATCAAGATGCAAGTATATTGTTGGAGATGTTGCAAACT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCGATCCCAATCAAGATGCAAGTATATTGTTGGAGATGTTGCAAACT  839

seq1  GACTCTAATGTTTATACAGTGTTACAAAAGCAAAAACAAAAAACCCAGGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTAATGTTTATACAGTGTTACAAAAGCAAAAACAAAAAACCCAGGA  889

seq1  CAGCCAGTGCAGTATTGACAGGAAAGAGCAAAGTTGAAGCATACATACAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGTGCAGTATTGACAGGAAAGAGCAAAGTTGAAGCATACATACAG  939

seq1  ATTGCTTAAAGTAATTCTTTTGTTTTGGTTTGGTTTGTTTTGGTTTGTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTAAAGTAATTCTTTTGTTTTGGTTTGGTTTGTTTTGGTTTGTTT  989

seq1  CGGTTTGGTTTGGTCTTTTTCAAGATAGGGTTTCTCTGTGTAGCCCTGGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTTGGTTTGGTCTTTTTCAAGATAGGGTTTCTCTGTGTAGCCCTGGC  1039

seq1  TGTCTTGGAACTCACTTTGTAGATCAGGCTGGCCTCGAACTCAGAAATCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGGAACTCACTTTGTAGATCAGGCTGGCCTCGAACTCAGAAATCC  1089

seq1  GCTTGCCTCTGCCTCCCGAGTGCTGGGACTAAAGGTGTGTACCACCACGC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCCTCTGCCTCCCGAGTGCTGGGACTAAAGGTGTGTACCACCACGC  1139

seq1  CCAGTCTGCTTAAAGTAATTCTTAACCACTCTTTTAAAATAAAAA  1193
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTGCTTAAAGTAATTCTTAACCACTCTTTTAAAATAAAAA  1184

seq1: chr4_134577462_134578666
seq2: B6Ng01-071C15.g_66_1260

seq1  GAATTCAGACCTGATAACTGAAGCATCAGCCGCCATTTTGGAACACGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACCTGATAACTGAAGCATCAGCCGCCATTTTGGAACACGAAG  50

seq1  TTACCTATAGCAAAGATGAAGCCATGTACTGAGGCTGGCAAAGGAGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTATAGCAAAGATGAAGCCATGTACTGAGGCTGGCAAAGGAGAAAG  100

seq1  AAATAAGAAACAGAGATGCGGCACCATCAGCTTCTACACTTGAGCCCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGAAACAGAGATGCGGCACCATCAGCTTCTACACTTGAGCCCTTG  150

seq1  CTTCCTGACCAATGGGACACAAACCTTCTGTTGTAGTCAGGGTTACCGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGACCAATGGGACACAAACCTTCTGTTGTAGTCAGGGTTACCGTT  200

seq1  GCTGTAAAGAAAAACCATGACCAAACTTAGGGAGGAATGGGTTTATTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAAAGAAAAACCATGACCAAACTTAGGGAGGAATGGGTTTATTTGT  250

seq1  TTCACACTTCCACATTGCTGTTCATCATCAGAGGAAGTCAGGACAGGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACTTCCACATTGCTGTTCATCATCAGAGGAAGTCAGGACAGGAAC  300

seq1  TTAGACATGGCAAGGACCTGAAGGCAGGAGCCATGGAAGGTTGCTGCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACATGGCAAGGACCTGAAGGCAGGAGCCATGGAAGGTTGCTGCTCA  350

seq1  CTGGTTTGCTCAGCCTGCTTGTTATAGAACCAAGGACCAGCATCCCAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTGCTCAGCCTGCTTGTTATAGAACCAAGGACCAGCATCCCAGGG  400

seq1  ATGGATCCGCCCACAACGGACTGGACCCGCCCACATCAATGACTAATTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATCCGCCCACAACGGACTGGACCCGCCCACATCAATGACTAATTAA  450

seq1  GAAAATGTGCTACAGGTTAGCCCACAGCCTGATCTTACGAAGGCATTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGTGCTACAGGTTAGCCCACAGCCTGATCTTACGAAGGCATTTTC  500

seq1  CCAACTTAGACTCCCTCCTCTCAGATGTCTACAGCTCGTGTCAAGTTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTAGACTCCCTCCTCTCAGATGTCTACAGCTCGTGTCAAGTTGAC  550

seq1  ATAAAGCTACTCAGCACACCTTCCTCTTGTTCGGCCCACGGTCTCTGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCTACTCAGCACACCTTCCTCTTGTTCGGCCCACGGTCTCTGAGG  600

seq1  TTTGCAGGAGCAGTCAAACCCAGTCTGATGCACTGACTCAGTTTTGCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGGAGCAGTCAAACCCAGTCTGATGCACTGACTCAGTTTTGCTCC  650

seq1  TCCCCTTCTGGACCCGCAGGGGACCCGTGCTCTGGGGAGGTCACTTGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTCTGGACCCGCAGGGGACCCGTGCTCTGGGGAGGTCACTTGCTG  700

seq1  CCTCTCACTCTACAGCATCTGTCCTGCAGCCTTAGGCGTGTCACTTGCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCACTCTACAGCATCTGTCCTGCAGCCTTAGGCGTGTCACTTGCCC  750

seq1  CAACCCATCCCTGCTTTCCTTTGCAGGCCCCCCATTGCGCTCACTCTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCATCCCTGCTTTCCTTTGCAGGCCCCCCATTGCGCTCACTCTCCC  800

seq1  AGATCCCTCTACCCACCTTGCATACAGCAGTCACTTCTTGAGGGCTGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCCTCTACCCACCTTGCATACAGCAGTCACTTCTTGAGGGCTGAGG  850

seq1  GCTGCTCGCAGCTCAGAGTAGAGCTCACTTTCAGAGTCAATGCCAGATGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTCGCAGCTCAGAGTAGAGCTCACTTTCAGAGTCAATGCCAGATGC  900

seq1  CATGCGAAACGTTTCATCCGTGCCCATAAGCAGGGACTTTCGTTGTCCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCGAAACGTTTCATCCGTGCCCATAAGCAGGGACTTTCGTTGTCCCT  950

seq1  GTTCCCACTCTGACTCTCAGAGCGACTATATCTCTCCTGTCTTCTTTGCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCACTCTGACTCTCAGAGCGACTATATCTCTCCTGTCTTCTTTGCA  1000

seq1  TCTCCAGACATTAGCCAAATCACCTTGAAACCCCAGGTCCCTTCCCAGCA  1050
      ||| ||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCT-CAGACATTAGCCAAATCACCTTGAAACCCCAGGTCCCTTCCCAGCC  1049

seq1  GAGCATCTGGGTATCTGCCACACCCAGCCACTTGCTCCTGGTCTATATGA  1100
      |||||||||||||||||||||| |||||||| |||||||||| |||||||
seq2  GAGCATCTGGGTATCTGCCACA-CCAGCCAC-TGCTCCTGGT-TATATGA  1096

seq1  GGCTCCTGCTGAATACTTCACAT-AAAAATATATCTTTTTTTTTTTTAAG  1149
      |||| |||||| |||||||  || ||||||||||||||||||||||  ||
seq2  GGCT-CTGCTG-ATACTTCCAATAAAAAATATATCTTTTTTTTTTT--AG  1142

seq1  ATGTG-TCTTG-ATCAAAGCAAATCCCAGACCTAGCAGGTTGTAAAAACT  1197
      ||||| ||||| |||||||  ||| ||  |||||||||| |||   ||||
seq2  ATGTGTTCTTGAATCAAAGGCAATTCCGAACCTAGCAGG-TGT---AACT  1188

seq1  GTTTCTTT  1205
      | ||||||
seq2  G-TTCTTT  1195