BAC Information

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BAC

Clone NameB6Ng01-071C22
Chromosome4 (Build37)
Map Location 42,786,389 - 42,955,635
singlet/doubletdoublet
Overlap geneCcl21b, LOC100039205, LOC433698, BC049635, N28178
Upstream geneCcl19-ps1, LOC621580, LOC545611, LOC100042524, LOC100042519, LOC100039817, LOC100042536, LOC100039824, LOC100042539, LOC100042544, LOC100039848, LOC100039863, LOC100042555, 1700045I11Rik, LOC100039894, LOC100039909, EG545605, LOC674214, LOC100038965, LOC100039053, LOC100039193, LOC100039374, LOC100039930, LOC100038993, LOC100039939, Ccl19-ps3, Ccl21c, LOC100039323, LOC665845, LOC100039973, LOC100039986, 4933409K07Rik, LOC100039344, LOC100039995, EG623054, Ccl19-ps2, LOC100039331, LOC100039131, LOC100040035, LOC100040048, Il11ra2, LOC665962, LOC545614, 1700008B15Rik, Ccl19
Downstream geneDnajb5, 1700022I11Rik, Vcp, Fancg, Pigo, Stoml2, B230312A22Rik, Unc13b, 4930417M19Rik, Rusc2, 4833436C18Rik, Tesk1, Cd72, Sit1, Rmrp, LOC622404, E130306D19Rik, Car9, Tpm2, Tln1, Creb3, Gba2, 1110029E03Rik, LOC100039672, LOC100040179, Npr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik, Olfr70, Olfr71, LOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268, Olfr155, Reck
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071C22.bB6Ng01-071C22.g
ACCDH888951DH888952
length1,1991,167
definitionDH888951|Mus musculus domesticus DNA, BAC clone: B6Ng01-071C22, 5' end.DH888952|Mus musculus domesticus DNA, BAC clone: B6Ng01-071C22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,786,389 - 42,787,599)(42,954,448 - 42,955,635)
sequence
ggctgaggctggatcacctttttattcagttaggtataaatcataggtgc
aaggacaagggaagggcgccatggagagcaggttcaggtcttgggacctg
agtgacctcctagaggggacagtcctgctgtctccttcctcattccctgg
gagacactctttcttctgactctctaggtctaccccagggaaggcagctc
cgccaggtaagaaagggatggccgtgcagatgtgatggttgaagcagggc
aagggtgtggacggaggccagcatgaggtggctgctttgggctcctgagt
ctgttttctagctccctctttgcctgtgagttggaccgtgaaccacccag
cttgaagttcgtgggggatctcctgggctccaggcgggctactgggctat
cctcttgagggctgtgtctgttcagttctggcagggcagaaaagaagtgt
gagaggcaggtggagggaggctcctctttgttccccttccatcccttcag
cagcctcacctcttgcagcccttggagccctttcctttctttccagactt
agaggttccccggttcttcctgcagccggggctttgtttccctggggctg
gaggctggtccaggcggcgcatcaggttctgcacccagccttcctcaggg
tttgcacatagctcaggcttagagtgcttccggggtgagaacctgagggt
tggagggcagcaagctttcttagtctggcccatcacacctccccaaccca
accaccagcctgtacccacccgatcagcgcactcacaggattgccgggat
gggacagcctaaacttggttcttgcttcctatagcctcggacaatactgt
agggaattttcttctggctgtacttaaggcagcagtcctgaccccctcca
tcactgcctgcaagtaggtgcacagacccagctgcggcttataagtgtct
ctatggccccttcccagccaaagctctccctccttggtacttggttcagg
gatgcagagagccaggaccagctaaggagctcagagtcatcatctgagcc
atgattgtggttggtgagatgagaccaaagctgtaagtgaaatgacagcg
caagttggggtctggtggtgtttgggcctggacttgcttgctgctatttt
aatccagtcttgagaccttagcacctgcctccccctcctttttcctgtg
gaattctgtgctttctgttttggtgataggaatgggggaactccaagact
tggccacttaaacaaggtccaggtgacctcccttaggaagcactaggtcc
agaaaggcaagtgtttaccctgccagcccattgcttgggctggggctaga
aagaggcaatgtattcatggcttctgctgcagctttcctcaaaggaagag
cacttgagttgaatcagtacctaggaataaggaaactgcttcatccctgg
ataccataggggctgctgctcaaatgtcttgtgggggaaggaggccaagg
gacagacccggagaggttatgcagtgctgagccgctctcagcggctctgt
ccctgcagctctgctgtggcatcctgatgttcccttagttaatctgaata
taaggatgagaacttctggatgagaaccaggcctgggggaagtggtcttc
agagaagtatatatgcaacccaagcctctattggttggagctcaggatgg
gcggtgttgagaaaagcattgatcttaactttcagcagccaagatgggaa
agactgaaacatttctcagaccctcatcagagccagacattaacctttgc
acttggcagaattttagacagtcacagtgatagaaaggcttggaaaggga
atgagtcttactaggttgatgacagtgtacctctataaacactgagccca
caccaaagagagattatggacatagggctggggcgggcttctgtaacaac
ggactagggagcaatgggccctccttttggaacaacactggatgcttatg
gagaaaaggtcagctgtcctgtgccatcctgggtaaagaggtgatcccag
ataggcctggtcctgttgaggatgagctgcggggctggctctgcacagtc
cgattcagcctgtggcttctgccattcaaccgtacagaagcaacaaacag
ctgctccaagtggtaagcatcgtcttggtctgtagaggacatgcacagag
agatggactcccagtgtccacagctgggggagtggcagacaagcactgtc
aattcccaaagtccaagatgattatctcttgtgcgttcagcagccccagc
cctgaaggagtagatgactcatcgggaagcgggccagagcctgaatagcc
atgcttatctcaatgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_42786389_42787599
seq2: B6Ng01-071C22.b_51_1249

seq1  GGCTGAGGCTGGATCACCTTTTTATTCAGTTAGGTATAAATCATAGGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGGCTGGATCACCTTTTTATTCAGTTAGGTATAAATCATAGGTGC  50

seq1  AAGGACAAGGGAAGGGCGCCATGGAGAGCAGGTTCAGGTCTTGGGACCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAAGGGAAGGGCGCCATGGAGAGCAGGTTCAGGTCTTGGGACCTG  100

seq1  AGTGACCTCCTAGAGGGGACAGTCCTGCTGTCTCCTTCCTCATTCCCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACCTCCTAGAGGGGACAGTCCTGCTGTCTCCTTCCTCATTCCCTGG  150

seq1  GAGACACTCTTTCTTCTGACTCTCTAGGTCTACCCCAGGGAAGGCAGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACTCTTTCTTCTGACTCTCTAGGTCTACCCCAGGGAAGGCAGCTC  200

seq1  CGCCAGGTAAGAAAGGGATGGCCGTGCAGATGTGATGGTTGAAGCAGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAGGTAAGAAAGGGATGGCCGTGCAGATGTGATGGTTGAAGCAGGGC  250

seq1  AAGGGTGTGGACGGAGGCCAGCATGAGGTGGCTGCTTTGGGCTCCTGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGTGGACGGAGGCCAGCATGAGGTGGCTGCTTTGGGCTCCTGAGT  300

seq1  CTGTTTTCTAGCTCCCTCTTTGCCTGTGAGTTGGACCGTGAACCACCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTCTAGCTCCCTCTTTGCCTGTGAGTTGGACCGTGAACCACCCAG  350

seq1  CTTGAAGTTCGTGGGGGATCTCCTGGGCTCCAGGCGGGCTACTGGGCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGTTCGTGGGGGATCTCCTGGGCTCCAGGCGGGCTACTGGGCTAT  400

seq1  CCTCTTGAGGGCTGTGTCTGTTCAGTTCTGGCAGGGCAGAAAAGAAGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGAGGGCTGTGTCTGTTCAGTTCTGGCAGGGCAGAAAAGAAGTGT  450

seq1  GAGAGGCAGGTGGAGGGAGGCTCCTCTTTGTTCCCCTTCCATCCCTTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCAGGTGGAGGGAGGCTCCTCTTTGTTCCCCTTCCATCCCTTCAG  500

seq1  CAGCCTCACCTCTTGCAGCCCTTGGAGCCCTTTCCTTTCTTTCCAGACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCACCTCTTGCAGCCCTTGGAGCCCTTTCCTTTCTTTCCAGACTT  550

seq1  AGAGGTTCCCCGGTTCTTCCTGCAGCCGGGGCTTTGTTTCCCTGGGGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTCCCCGGTTCTTCCTGCAGCCGGGGCTTTGTTTCCCTGGGGCTG  600

seq1  GAGGCTGGTCCAGGCGGCGCATCAGGTTCTGCACCCAGCCTTCCTCAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGGTCCAGGCGGCGCATCAGGTTCTGCACCCAGCCTTCCTCAGGG  650

seq1  TTTGCACATAGCTCAGGCTTAGAGTGCTTCCGGGGTGAGAACCTGAGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCACATAGCTCAGGCTTAGAGTGCTTCCGGGGTGAGAACCTGAGGGT  700

seq1  TGGAGGGCAGCAAGCTTTCTTAGTCTGGCCCATCACACCTCCCCAACCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGCAGCAAGCTTTCTTAGTCTGGCCCATCACACCTCCCCAACCCA  750

seq1  ACCACCAGCCTGTACCCACCCGATCAGCGCACTCACAGGATTGCCGGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCAGCCTGTACCCACCCGATCAGCGCACTCACAGGATTGCCGGGAT  800

seq1  GGGACAGCCTAAACTTGGTTCTTGCTTCCTATAGCCTCGGACAATACTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGCCTAAACTTGGTTCTTGCTTCCTATAGCCTCGGACAATACTGT  850

seq1  AGGGAATTTTCTTCTGGCTGTACTTAAGGCAGCAGTCCTGACCCCCTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATTTTCTTCTGGCTGTACTTAAGGCAGCAGTCCTGACCCCCTCCA  900

seq1  TCACTGCCTGCAAGGTAGGTGCACAGACCCAGCTGCGGCTTATAAGGTGT  950
      ||||||||||||| ||||||||||||||||||||||||||||||| ||||
seq2  TCACTGCCTGCAA-GTAGGTGCACAGACCCAGCTGCGGCTTATAA-GTGT  948

seq1  CTCTATGGCCCCCTTCCCCAGCCAAAGCCTCTCCCTCCTTGGTACCTTGG  1000
      ||||||||||||  | ||||||||||| |||||||||||||||| |||||
seq2  CTCTATGGCCCC--TTCCCAGCCAAAG-CTCTCCCTCCTTGGTA-CTTGG  994

seq1  GTCCAGGGGATGCAGAGAGCCAGGACCAGGCTAAGGAGGCTCAGAGTCAT  1050
       ||   |||||||||||||||||||||| |||||||| ||||||||||||
seq2  TTC--AGGGATGCAGAGAGCCAGGACCA-GCTAAGGA-GCTCAGAGTCAT  1040

seq1  CATCTGAGCCATGATTGTGGTTGAGTTGAGGATGAGACCAGAGCTGTAGG  1100
      ||||||||||||||||||||||  | ||| |||||||||| ||||||| |
seq2  CATCTGAGCCATGATTGTGGTT--GGTGA-GATGAGACCAAAGCTGTAAG  1087

seq1  TGAGATGGACAGCCGCAAGTTGGGGTCTG--TGTGTGTGGGCTGCGACTG  1148
      ||| || ||||| ||||||||||||||||   |||| |||||   |||| 
seq2  TGAAAT-GACAG-CGCAAGTTGGGGTCTGGTGGTGTTTGGGCCTGGACTT  1135

seq1  GCTTGCTGCCTATTT--ATGCAGTC-TGAGACTTTCGCTTCCCTCGCTCC  1195
      |||||||| ||||||  || ||||| |||||| || ||   |||  ||||
seq2  GCTTGCTG-CTATTTTAATCCAGTCTTGAGACCTTAGC--ACCTGCCTCC  1182

seq1  CCCTCC-TTTTCCTGTG  1211
      |||||| ||||||||||
seq2  CCCTCCTTTTTCCTGTG  1199

seq1: chr4_42954448_42955635
seq2: B6Ng01-071C22.g_67_1233 (reverse)

seq1  TCCATTGAGAAGATTAAAGCAT-GCTAAATTCAGGGGCTCTTGCTCGCTC  49
      ||||||||||      |||||| |||  |||||  |||||| || |||| 
seq2  TCCATTGAGA-----TAAGCATGGCT--ATTCA--GGCTCTGGCCCGCT-  40

seq1  TCCCGATGAGTCATCTTTCTCTCTCTCTGTGGCTGTGGGCTGCTGAACCG  99
      ||||||||||||||||    |||  || | ||||| ||||||||||| ||
seq2  TCCCGATGAGTCATCT---ACTCCTTCAG-GGCTG-GGGCTGCTGAA-CG  84

seq1  CAC-AGAGATAATTCATCTCTGGGCTTTGGGAATTGGACAGTGCTTGTCT  148
      ||| |||||||| |||||| ||| ||||||||||| ||||||||||||||
seq2  CACAAGAGATAA-TCATCT-TGGACTTTGGGAATT-GACAGTGCTTGTCT  131

seq1  GCCACT-CCCCAGCTGTGGACACTGGGAGTCCATCTCTTCTGTTCCATGG  197
      |||||| |||||||||||||||||||||||||||||| |||| | ||| |
seq2  GCCACTCCCCCAGCTGTGGACACTGGGAGTCCATCTC-TCTG-TGCAT-G  178

seq1  TCCTCTACAGACCAAGACGATGCTTACCACCTTGGAGCAGCTGTTTGTTG  247
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCCTCTACAGACCAAGACGATGCTTACCA-CTTGGAGCAGCTGTTTGTTG  227

seq1  CTTCTGTACGGTTGAATGGCAGAAGCCCACAGGCTGAATCGGACTGTGCA  297
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTTCTGTACGGTTGAATGGCAGAAG-CCACAGGCTGAATCGGACTGTGCA  276

seq1  GAGCCAGCCCCGCAGCTCATCCTCAACAGGACCAGGCCTATCTGGGATCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGCCCCGCAGCTCATCCTCAACAGGACCAGGCCTATCTGGGATCA  326

seq1  CCTCTTTACCCAGGATGGCACAGGACAGCTGACCTTTTCTCCATAAGCAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTACCCAGGATGGCACAGGACAGCTGACCTTTTCTCCATAAGCAT  376

seq1  CCAGTGTTGTTCCAAAAGGAGGGCCCATTGCTCCCTAGTCCGTTGTTACA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTTGTTCCAAAAGGAGGGCCCATTGCTCCCTAGTCCGTTGTTACA  426

seq1  GAAGCCCGCCCCAGCCCTATGTCCATAATCTCTCTTTGGTGTGGGCTCAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCGCCCCAGCCCTATGTCCATAATCTCTCTTTGGTGTGGGCTCAG  476

seq1  TGTTTATAGAGGTACACTGTCATCAACCTAGTAAGACTCATTCCCTTTCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATAGAGGTACACTGTCATCAACCTAGTAAGACTCATTCCCTTTCC  526

seq1  AAGCCTTTCTATCACTGTGACTGTCTAAAATTCTGCCAAGTGCAAAGGTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTTCTATCACTGTGACTGTCTAAAATTCTGCCAAGTGCAAAGGTT  576

seq1  AATGTCTGGCTCTGATGAGGGTCTGAGAAATGTTTCAGTCTTTCCCATCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTGGCTCTGATGAGGGTCTGAGAAATGTTTCAGTCTTTCCCATCT  626

seq1  TGGCTGCTGAAAGTTAAGATCAATGCTTTTCTCAACACCGCCCATCCTGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCTGAAAGTTAAGATCAATGCTTTTCTCAACACCGCCCATCCTGA  676

seq1  GCTCCAACCAATAGAGGCTTGGGTTGCATATATACTTCTCTGAAGACCAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAACCAATAGAGGCTTGGGTTGCATATATACTTCTCTGAAGACCAC  726

seq1  TTCCCCCAGGCCTGGTTCTCATCCAGAAGTTCTCATCCTTATATTCAGAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCAGGCCTGGTTCTCATCCAGAAGTTCTCATCCTTATATTCAGAT  776

seq1  TAACTAAGGGAACATCAGGATGCCACAGCAGAGCTGCAGGGACAGAGCCG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAAGGGAACATCAGGATGCCACAGCAGAGCTGCAGGGACAGAGCCG  826

seq1  CTGAGAGCGGCTCAGCACTGCATAACCTCTCCGGGTCTGTCCCTTGGCCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGCGGCTCAGCACTGCATAACCTCTCCGGGTCTGTCCCTTGGCCT  876

seq1  CCTTCCCCCACAAGACATTTGAGCAGCAGCCCCTATGGTATCCAGGGATG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCCCACAAGACATTTGAGCAGCAGCCCCTATGGTATCCAGGGATG  926

seq1  AAGCAGTTTCCTTATTCCTAGGTACTGATTCAACTCAAGTGCTCTTCCTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTTTCCTTATTCCTAGGTACTGATTCAACTCAAGTGCTCTTCCTT  976

seq1  TGAGGAAAGCTGCAGCAGAAGCCATGAATACATTGCCTCTTTCTAGCCCC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAAAGCTGCAGCAGAAGCCATGAATACATTGCCTCTTTCTAGCCCC  1026

seq1  AGCCCAAGCAATGGGCTGGCAGGGTAAACACTTGCCTTTCTGGACCTAGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAAGCAATGGGCTGGCAGGGTAAACACTTGCCTTTCTGGACCTAGT  1076

seq1  GCTTCCTAAGGGAGGTCACCTGGACCTTGTTTAAGTGGCCAAGTCTTGGA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTAAGGGAGGTCACCTGGACCTTGTTTAAGTGGCCAAGTCTTGGA  1126

seq1  GTTCCCCCATTCCTATCACCAAAACAGAAAGCACAGAATTC  1188
      |||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCCCATTCCTATCACCAAAACAGAAAGCACAGAATTC  1167