BAC Information

Click to search

BAC

Clone NameB6Ng01-071D05
Chromosome4 (Build37)
Map Location 6,616,962 - 6,760,596
singlet/doubletdoublet
Overlap geneTox
Upstream gene1700012H17Rik, LOC669309, 3110003A22Rik, Cyp7a1, Sdcbp, Nsmaf, LOC100039397, LOC100039414
Downstream geneLOC100039421, LOC666700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071D05.bB6Ng01-071D05.g
ACCDH888965DH888966
length1,0881,134
definitionDH888965|Mus musculus domesticus DNA, BAC clone: B6Ng01-071D05, 5' end.DH888966|Mus musculus domesticus DNA, BAC clone: B6Ng01-071D05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,759,498 - 6,760,596)(6,616,962 - 6,618,114)
sequence
gaattctttaagaaatagtaggttgaaccaaaaatgcaatagatagttaa
actttttttcagctacaaaatcagcaaatgcatgtttgtttgcatattct
ttatatatttatatgaggtagctgtttgcagcatctgaattggttaatca
atgatggtaagttcttcatcttcactagacatgcagtgtctggacaatta
catctatgcactgtagatgagacccaagcacagacacactgaaaaatttg
attgctttagacatacttaggaacaggagaaatccaaagtttttttaaaa
tttattaagttgacaaaacgcattaggtttcaacacactattttaaacat
gaaattttcttggcattctgtgattccttttaaggatagacacagaactc
tagaatattctcctaaggaaataaatgaatatgattcatcacagtgactc
atatcagaaaaactggaaacaatttaaatattcaaaatgtaaacttgaaa
taaattacagaacagtgaaataatatacgtatatttaaacaatggtctag
atagtattcattagtattggtcattatatgtgaaaaggttaaagtacaca
gagttgaataaatatagttcgcaggtgttgatctgctgcagctggaccag
gggatgacccatggtggaccagggcatcatccagagcctgtacaatcttt
cattttccttatcgcaccacagcaacctcttcctgggctgattattttca
ttcctgctgtacagacttgagatctgaggtgtaaaaaaaagaaaatatta
gttgttattaagaggtgatctgatatttgtgcctggtgttcctatctcct
aaatcagaaactagtgatgggatatttcttattaaaaatggaaacaaagg
gtcaaaattaagtgtcaagtatacagtagaaaggctctatggaaaaaaaa
aaaaacacacttcagacggttctcctttatataaacttgatttacttggg
ttatttataaaataagacatttgtaaatcagatcttctgggggttttcag
tcacaaaaaattaataattatagaagtatagtacgttt

gaattcaagagcagcagaagcaggctttgttggaagtgaccacagaaaga
agcggaattaatctcatggctgtctctgcagcagattctagccatggttt
ttaacatccaagaaatcaagattcaaaatgcaccatgcacaatttagttt
caagtagctttggaaggcgaaatattactgacatattccttaaactaagc
aggatggtgggagggttgatttttaaataagatttttccttagactttta
ctcatgtgtgggtggtccctcacatagtgatttgaaaactatgtctactt
caatcttccttagccctctggttggcttctagagatctactgatttacca
ttccactgataagcccatgttaccccgatagacccatgtccatgtctatt
ccactgaaactgtggagagaggcaaaattcagggtgaaaagtcaccaaca
agtcaagagtttagtattactggttgttgacccaacacacccttacagca
gtagatttcctaagtaacaactgccttggaggaggaggtcctgaacagag
gcccctgtagctcaggctccaggcatcttcctgtagctcagggaaggcag
ttgtccactggctttccagcccagtcggaacctttctctaggtattccca
gcatgaaaggagcctcaatgccctcagtgaaagatcttcatttcccctgg
tcctgacctgctgctcaccttctcagtttctgtcactagggtccagtatg
atagtaggtagagagctgaagaaagttctgagagaccctgtattggtttc
tttgaccactgagctcattgacaggctgtgatcattgtctgcagtgctta
ctacataatctcagcgcctagcctaccacagtgccttaagaaaccatggg
ttttcaataaagaaagagaatttgatgctccagtaaaaaggcaaatacga
ccatgtaaatggcaagattatttctctctttagtgtgagttctctgctgg
attttatttattatttatttatttatttattattattattaggaaacaac
tgacaaactctactttaaagcatcagatcaagccaatatagtacaaatat
tccactaggggaggaaaaatatatcaaactgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_6759498_6760596
seq2: B6Ng01-071D05.b_41_1128 (reverse)

seq1  AAACGTAACCTATACTTTTTTCTATATTTTATTTTTAATTTTTTGTGACT  50
      |||||||  ||||||    |||||||    ||| ||||||||||||||||
seq2  AAACGTA--CTATAC----TTCTATA----ATTATTAATTTTTTGTGACT  40

seq1  GGATACCCCCAG-AGATCTTGATTTACCAAATGTCTTATTTTATAAATAA  99
      | | |||||||| ||||| ||||||| |||||||||||||||||||||||
seq2  GAAAACCCCCAGAAGATC-TGATTTA-CAAATGTCTTATTTTATAAATAA  88

seq1  CCCAAGTAAATCAAGTTTATATAAAGGAGAACCGTCTGAAGTGTGTTTTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTAAATCAAGTTTATATAAAGGAGAACCGTCTGAAGTGTGTTTTT  138

seq1  TTTTTTTTCCATAGAGCCTTTCTACTGTATACTTGACACTTAATTTTGAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCCATAGAGCCTTTCTACTGTATACTTGACACTTAATTTTGAC  188

seq1  CCTTTGTTTCCATTTTTAATAAGAAATATCCCATCACTAGTTTCTGATTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTTTCCATTTTTAATAAGAAATATCCCATCACTAGTTTCTGATTT  238

seq1  AGGAGATAGGAACACCAGGCACAAATATCAGATCACCTCTTAATAACAAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATAGGAACACCAGGCACAAATATCAGATCACCTCTTAATAACAAC  288

seq1  TAATATTTTCTTTTTTTTACACCTCAGATCTCAAGTCTGTACAGCAGGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTTCTTTTTTTTACACCTCAGATCTCAAGTCTGTACAGCAGGAA  338

seq1  TGAAAATAATCAGCCCAGGAAGAGGTTGCTGTGGTGCGATAAGGAAAATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATAATCAGCCCAGGAAGAGGTTGCTGTGGTGCGATAAGGAAAATG  388

seq1  AAAGATTGTACAGGCTCTGGATGATGCCCTGGTCCACCATGGGTCATCCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTGTACAGGCTCTGGATGATGCCCTGGTCCACCATGGGTCATCCC  438

seq1  CTGGTCCAGCTGCAGCAGATCAACACCTGCGAACTATATTTATTCAACTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCCAGCTGCAGCAGATCAACACCTGCGAACTATATTTATTCAACTC  488

seq1  TGTGTACTTTAACCTTTTCACATATAATGACCAATACTAATGAATACTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACTTTAACCTTTTCACATATAATGACCAATACTAATGAATACTAT  538

seq1  CTAGACCATTGTTTAAATATACGTATATTATTTCACTGTTCTGTAATTTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACCATTGTTTAAATATACGTATATTATTTCACTGTTCTGTAATTTA  588

seq1  TTTCAAGTTTACATTTTGAATATTTAAATTGTTTCCAGTTTTTCTGATAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGTTTACATTTTGAATATTTAAATTGTTTCCAGTTTTTCTGATAT  638

seq1  GAGTCACTGTGATGAATCATATTCATTTATTTCCTTAGGAGAATATTCTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACTGTGATGAATCATATTCATTTATTTCCTTAGGAGAATATTCTA  688

seq1  GAGTTCTGTGTCTATCCTTAAAAGGAATCACAGAATGCCAAGAAAATTTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTGTGTCTATCCTTAAAAGGAATCACAGAATGCCAAGAAAATTTC  738

seq1  ATGTTTAAAATAGTGTGTTGAAACCTAATGCGTTTTGTCAACTTAATAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTAAAATAGTGTGTTGAAACCTAATGCGTTTTGTCAACTTAATAAA  788

seq1  TTTTAAAAAAACTTTGGATTTCTCCTGTTCCTAAGTATGTCTAAAGCAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAAAACTTTGGATTTCTCCTGTTCCTAAGTATGTCTAAAGCAAT  838

seq1  CAAATTTTTCAGTGTGTCTGTGCTTGGGTCTCATCTACAGTGCATAGATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTTTCAGTGTGTCTGTGCTTGGGTCTCATCTACAGTGCATAGATG  888

seq1  TAATTGTCCAGACACTGCATGTCTAGTGAAGATGAAGAACTTACCATCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTCCAGACACTGCATGTCTAGTGAAGATGAAGAACTTACCATCAT  938

seq1  TGATTAACCAATTCAGATGCTGCAAACAGCTACCTCATATAAATATATAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAACCAATTCAGATGCTGCAAACAGCTACCTCATATAAATATATAA  988

seq1  AGAATATGCAAACAAACATGCATTTGCTGATTTTGTAGCTGAAAAAAAGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATGCAAACAAACATGCATTTGCTGATTTTGTAGCTGAAAAAAAGT  1038

seq1  TTAACTATCTATTGCATTTTTGGTTCAACCTACTATTTCTTAAAGAATTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTATCTATTGCATTTTTGGTTCAACCTACTATTTCTTAAAGAATTC  1088


seq1: chr4_6616962_6618114
seq2: B6Ng01-071D05.g_65_1198

seq1  GAATTCAAGAGCAGCAGAAGCAGGCTTTGTTGGAAGTGACCACAGAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGCAGCAGAAGCAGGCTTTGTTGGAAGTGACCACAGAAAGA  50

seq1  AGCGGAATTAATCTCATGGCTGTCTCTGCAGCAGATTCTAGCCATGGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGAATTAATCTCATGGCTGTCTCTGCAGCAGATTCTAGCCATGGTTT  100

seq1  TTAACATCCAAGAAATCAAGATTCAAAATGCACCATGCACAATTTAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATCCAAGAAATCAAGATTCAAAATGCACCATGCACAATTTAGTTT  150

seq1  CAAGTAGCTTTGGAAGGCGAAATATTACTGACATATTCCTTAAACTAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAGCTTTGGAAGGCGAAATATTACTGACATATTCCTTAAACTAAGC  200

seq1  AGGATGGTGGGAGGGTTGATTTTTAAATAAGATTTTTCCTTAGACTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGTGGGAGGGTTGATTTTTAAATAAGATTTTTCCTTAGACTTTTA  250

seq1  CTCATGTGTGGGTGGTCCCTCACATAGTGATTTGAAAACTATGTCTACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTGTGGGTGGTCCCTCACATAGTGATTTGAAAACTATGTCTACTT  300

seq1  CAATCTTCCTTAGCCCTCTGGTTGGCTTCTAGAGATCTACTGATTTACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTCCTTAGCCCTCTGGTTGGCTTCTAGAGATCTACTGATTTACCA  350

seq1  TTCCACTGATAAGCCCATGTTACCCCGATAGACCCATGTCCATGTCTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTGATAAGCCCATGTTACCCCGATAGACCCATGTCCATGTCTATT  400

seq1  CCACTGAAACTGTGGAGAGAGGCAAAATTCAGGGTGAAAAGTCACCAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAAACTGTGGAGAGAGGCAAAATTCAGGGTGAAAAGTCACCAACA  450

seq1  AGTCAAGAGTTTAGTATTACTGGTTGTTGACCCAACACACCCTTACAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGAGTTTAGTATTACTGGTTGTTGACCCAACACACCCTTACAGCA  500

seq1  GTAGATTTCCTAAGTAACAACTGCCTTGGAGGAGGAGGTCCTGAACAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATTTCCTAAGTAACAACTGCCTTGGAGGAGGAGGTCCTGAACAGAG  550

seq1  GCCCCTGTAGCTCAGGCTCCAGGCATCTTCCTGTAGCTCAGGGAAGGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGTAGCTCAGGCTCCAGGCATCTTCCTGTAGCTCAGGGAAGGCAG  600

seq1  TTGTCCACTGGCTTTCCAGCCCAGTCGGAACCTTTCTCTAGGTATTCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCACTGGCTTTCCAGCCCAGTCGGAACCTTTCTCTAGGTATTCCCA  650

seq1  GCATGAAAGGAGCCTCAATGCCCTCAGTGAAAGATCTTCATTTCCCCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAAAGGAGCCTCAATGCCCTCAGTGAAAGATCTTCATTTCCCCTGG  700

seq1  TCCTGACCTGCTGCTCACCTTCTCAGTTTCTGTCACTAGGGTCCAGTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACCTGCTGCTCACCTTCTCAGTTTCTGTCACTAGGGTCCAGTATG  750

seq1  ATAGTAGGTAGAGAGCTGAAGAAAGTTCTGAGAGACCCTGTATTGGTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAGGTAGAGAGCTGAAGAAAGTTCTGAGAGACCCTGTATTGGTTTC  800

seq1  TTTGACCACTGAGCTCATTGACAGGCTGTGATCATTGTCTGCAGTGCTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACCACTGAGCTCATTGACAGGCTGTGATCATTGTCTGCAGTGCTTA  850

seq1  CTACATAATCTCAGCGCCTAGCCTACCACAGTGCCTTAAGAAACCAT-GG  899
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTACATAATCTCAGCGCCTAGCCTACCACAGTGCCTTAAGAAACCATGGG  900

seq1  TTTTCAATAAAGAAAGAGAATTTGATGCTCCAGTAAAAAAGGCAAATACG  949
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTTTCAATAAAGAAAGAGAATTTGATGCTCCAGT-AAAAAGGCAAATACG  949

seq1  ACCATGTAAATGGCAAGAATTATTTCTCTCTTTAGTGTGGAGTTCTCTGC  999
      ||||||||||||||||| |||||||||||||||||||| |||||||||||
seq2  ACCATGTAAATGGCAAG-ATTATTTCTCTCTTTAGTGT-GAGTTCTCTGC  997

seq1  TGGAATTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTA  1049
      ||| |||||||||| |||||||||||||||||||||   |||||   |||
seq2  TGG-ATTTTATTTA-TTATTTATTTATTTATTTATT--ATTATT--ATTA  1041

seq1  GGACACAACTGACAAACTCTAACTTAAAAGCAAACAAGGATCAAAGCAAA  1099
      ||| |||||||||||||||| |||| ||||| | ||  |||| |||| ||
seq2  GGAAACAACTGACAAACTCT-ACTTTAAAGC-ATCA--GATC-AAGCCAA  1086

seq1  TAATAAGTACAAATATCCCAACTAAGGTGAAGGAAAATATAATACAAACT  1149
      ||   ||||||||||| || ||| ||| || | ||||||||   ||||||
seq2  TA--TAGTACAAATATTCC-ACT-AGGGGAGGAAAAATATA--TCAAACT  1130

seq1  GAAA  1153
      ||||
seq2  GAAA  1134


| Home | SequenceCutter | Blast | Download |