BAC Information

Click to search

BAC

Clone NameB6Ng01-071E14
Chromosome4 (Build37)
Map Location 21,791,923 - 21,935,394
singlet/doubletdoublet
Overlap gene5730406M06Rik, Coq3, 6230409E13Rik
Upstream genePrdm13, Ccnc, 2610029I01Rik, Usp45, 4930528A17Rik
Downstream geneLOC100040379, Fbxl4, Pou3f2, LOC664911, 1700025O08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071E14.bB6Ng01-071E14.g
ACCDH889027DH889028
length1,2411,172
definitionDH889027|Mus musculus domesticus DNA, BAC clone: B6Ng01-071E14, 5' end.DH889028|Mus musculus domesticus DNA, BAC clone: B6Ng01-071E14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,934,138 - 21,935,394)(21,791,923 - 21,793,106)
sequence
gaattcagtgttcctttctctgagacctccttgcccacaccataaggcct
ttcactgagatggagatgcaaaccaggggctgaatacaaaattaaatgtc
ttctttgatgaagaagagatcaggagacagcagagagaccttgaggccaa
gattatatgagttatgaggatgaggacttaggggatactgagactgctta
gagatgaacgtgttgtgttgcctctcagggtagagacaagggaagcccag
atgctgtgctttggatttcagtttcagactctcccaagagagctaggcgg
ggtccaatggcaactcctctactcccaaaagtttgctgagccagccagag
atttcttcaaaaaagttctctgaccaaagctataaacaccaataagggga
catctttgtcattggtcaatatcaatccatccatttgagagccctataga
aaattccttcaagcaaagggcaagaggaaaactggaagctatcctgaggg
aattgtagaaggggaaggcaaatcagaacgtgctagtttctaatatgact
tcctactgtgtataagaattcttggaagtagaagaaattggggctgggga
atttgctatagtctataagtgctttttgagactagatggatgcgtttatt
caataaagtgctctacaaaacccttttcagggttatcaaatcagaaattg
gatttgcacaacattaatgctcatgtggtaattagcagccatcacctcca
tgtggtacattactatctttctaatgcagaagctgatcatgtgatcacgc
aaaatgaatacactaattgtggggacttgtaagctgctatatttgaaaaa
gctaatgctacacctggcaatcacttccatgagtccaaactctaggccat
ccttctgcagattcccggaagcttaaggtcatccacagctctgtcaggta
cacctggacatcaaacccagtaacatcttttattgtcatgagatgcaaag
tgagcctcctggaagctggaatgtgaaaatacgctagctgatttgcttct
ctctgctgtgtgatattagaaaattggtgacctgatcatgtgacatcact
agcaaagcgaggaagaaattctttgcttcaggttaatgagatctgaagag
aaatgtccaacaccttcaaagcttaatggcttgtggcctacaactgtcaa
ggttcttgagagaacgggttcaatgtgcacaccaatgtgtg
gaattctttgtttagctctgtaccccattttttaatggggttatttgaat
ttcaggagtccagcttcttgagctctttgtatatattggatattagtccc
ctatcagatttaggaatggtaaaaatcctttcccaatcttttggtggact
ttttgtcttattgacggtgtcttttgccttacagaagtttagcaatttta
tgaggtcccatttgtcaattcttgatcttacagcgcaagccattgctgat
ctgtttaggaatttttcccctgtgcccaaatcttcaagacttttccccac
tttctcctctattaatttcagtgtctctggtcttatgtggagttctttga
tccacttagacttgagctttgtacaaggagagaggaacggatcgatttga
gaaaggtatttattgaaccatgtcttcatatgatgctttccttggtattt
acagaataggtcaaaattcatagtggagaaaaaagtgaattgaaaaagta
actgcttttcataaacctttatgtaactgtagcttttctcttcaggtgac
actttaaagtcctaagtgaaacagtacaaattcagaactgagtgtggtgg
cagatgctctactctcagcaatcccaggggacaaggctggggcatgagtc
tgaaactgatttctcaagggggaaagaaaaaaaaaggaaagaacattgaa
agcgattgtctgaaatatatataacaacagaaagtaatgtaatttaaaga
ggttaaggaggtataactcagcaatagactacatacttagcatctcttct
tttctttcttttttttgttttttgttttttgaaaagggtttctctgtgta
tccctggctgccctgaaaccctctctgtgaccaggcctcagggatctgcc
tgcctctacctcccaagtgctgggactaaaggagtgcacggccatcaaag
agtcgtgcttagtatctttatagccaatgccaaaaagcaaagcaaaaaca
accccaaactgaaatttagaaagcagctgctctgcatgttagttctcagt
attatgttgtaattgtactctgggctccatactgttgcatagaatagtga
tgaaaggacgagaatgctgaaacttgaaggcttgtgagcatgccagtcac
ttgaaagtccatcttcagctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_21934138_21935394
seq2: B6Ng01-071E14.b_49_1289 (reverse)

seq1  CACACATTACCATTAGTGTG--CAATGACACTGTTC-CTCAAGACACT--  45
        ||||    |||| |||||  || |||  | |||| |||||||  ||  
seq2  --CACA----CATTGGTGTGCACATTGAACCCGTTCTCTCAAGAACCTTG  44

seq1  GCAGTTGTTAGCCACAAGCAATATAAGCTTTGGAAAGGTGTTGGCCA-TT  94
       |||||||  ||||||||| || |||||||||  |||||||||| || ||
seq2  ACAGTTGTAGGCCACAAGCCAT-TAAGCTTTG--AAGGTGTTGGACATTT  91

seq1  CTCTTCCAAGATCTCATTAACCTGGAAGCAAAGGAAATATCTTTCTTCTG  144
      ||||||  ||||||||||||||| |||||||||  ||| |||| ||   |
seq2  CTCTTC--AGATCTCATTAACCT-GAAGCAAAG--AATTTCTTCCT--CG  134

seq1  CTTTGCTAGTTGATGTCACATGATCCAGGTCACCAATTTTCT-ATATCAC  193
      ||||||||| |||||||||||||| ||||||||||||||||| |||||||
seq2  CTTTGCTAG-TGATGTCACATGAT-CAGGTCACCAATTTTCTAATATCAC  182

seq1  ACCAGCAGAGAGAAGCAAATCAGCTAGCGTTATTTTCAACATTCCAGGCT  243
      | ||||||||||||||||||||||||||| ||||||| |||||||| |||
seq2  A-CAGCAGAGAGAAGCAAATCAGCTAGCG-TATTTTC-ACATTCCA-GCT  228

seq1  TCCAGGAGGCTCACTTTGCATCTCATGACAAATAAAGATGTTACTGGGTT  293
      |||||||||||||||||||||||||||||||  |||||||||||||||||
seq2  TCCAGGAGGCTCACTTTGCATCTCATGACAATAAAAGATGTTACTGGGTT  278

seq1  TGATGTCCAGGTGTACCCTGACAGAGCTGTGGATGACCTTAAGCTTCCGG  343
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGATGTCCAGGTGTA-CCTGACAGAGCTGTGGATGACCTTAAGCTTCCGG  327

seq1  GAATCTGCAGAAGGATGGCCTAGAGTTTGGACTCATGGAAGTGATTGCCA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGCAGAAGGATGGCCTAGAGTTTGGACTCATGGAAGTGATTGCCA  377

seq1  GGTGTAGCATTAGCTTTTTCAAATATAGCAGCTTACAAGTCCCCACAATT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAGCATTAGCTTTTTCAAATATAGCAGCTTACAAGTCCCCACAATT  427

seq1  AGTGTATTCATTTTGCGTGATCACATGATCAGCTTCTGCATTAGAAAGAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTATTCATTTTGCGTGATCACATGATCAGCTTCTGCATTAGAAAGAT  477

seq1  AGTAATGTACCACATGGAGGTGATGGCTGCTAATTACCACATGAGCATTA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGTACCACATGGAGGTGATGGCTGCTAATTACCACATGAGCATTA  527

seq1  ATGTTGTGCAAATCCAATTTCTGATTTGATAACCCTGAAAAGGGTTTTGT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTGCAAATCCAATTTCTGATTTGATAACCCTGAAAAGGGTTTTGT  577

seq1  AGAGCACTTTATTGAATAAACGCATCCATCTAGTCTCAAAAAGCACTTAT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACTTTATTGAATAAACGCATCCATCTAGTCTCAAAAAGCACTTAT  627

seq1  AGACTATAGCAAATTCCCCAGCCCCAATTTCTTCTACTTCCAAGAATTCT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATAGCAAATTCCCCAGCCCCAATTTCTTCTACTTCCAAGAATTCT  677

seq1  TATACACAGTAGGAAGTCATATTAGAAACTAGCACGTTCTGATTTGCCTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACAGTAGGAAGTCATATTAGAAACTAGCACGTTCTGATTTGCCTT  727

seq1  CCCCTTCTACAATTCCCTCAGGATAGCTTCCAGTTTTCCTCTTGCCCTTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCTACAATTCCCTCAGGATAGCTTCCAGTTTTCCTCTTGCCCTTT  777

seq1  GCTTGAAGGAATTTTCTATAGGGCTCTCAAATGGATGGATTGATATTGAC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAAGGAATTTTCTATAGGGCTCTCAAATGGATGGATTGATATTGAC  827

seq1  CAATGACAAAGATGTCCCCTTATTGGTGTTTATAGCTTTGGTCAGAGAAC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACAAAGATGTCCCCTTATTGGTGTTTATAGCTTTGGTCAGAGAAC  877

seq1  TTTTTTGAAGAAATCTCTGGCTGGCTCAGCAAACTTTTGGGAGTAGAGGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGAAGAAATCTCTGGCTGGCTCAGCAAACTTTTGGGAGTAGAGGA  927

seq1  GTTGCCATTGGACCCCGCCTAGCTCTCTTGGGAGAGTCTGAAACTGAAAT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCATTGGACCCCGCCTAGCTCTCTTGGGAGAGTCTGAAACTGAAAT  977

seq1  CCAAAGCACAGCATCTGGGCTTCCCTTGTCTCTACCCTGAGAGGCAACAC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCACAGCATCTGGGCTTCCCTTGTCTCTACCCTGAGAGGCAACAC  1027

seq1  AACACGTTCATCTCTAAGCAGTCTCAGTATCCCCTAAGTCCTCATCCTCA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACGTTCATCTCTAAGCAGTCTCAGTATCCCCTAAGTCCTCATCCTCA  1077

seq1  TAACTCATATAATCTTGGCCTCAAGGTCTCTCTGCTGTCTCCTGATCTCT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCATATAATCTTGGCCTCAAGGTCTCTCTGCTGTCTCCTGATCTCT  1127

seq1  TCTTCATCAAAGAAGACATTTAATTTTGTATTCAGCCCCTGGTTTGCATC  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATCAAAGAAGACATTTAATTTTGTATTCAGCCCCTGGTTTGCATC  1177

seq1  TCCATCTCAGTGAAAGGCCTTATGGTGTGGGCAAGGAGGTCTCAGAGAAA  1243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTCAGTGAAAGGCCTTATGGTGTGGGCAAGGAGGTCTCAGAGAAA  1227

seq1  GGAACACTGAATTC  1257
      ||||||||||||||
seq2  GGAACACTGAATTC  1241

seq1: chr4_21791923_21793106
seq2: B6Ng01-071E14.g_67_1238

seq1  GAATTCTTTGTTTAGCTCTGTACCCCATTTTTTAATGGGGTTATTTGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGTACCCCATTTTTTAATGGGGTTATTTGAAT  50

seq1  TTCAGGAGTCCAGCTTCTTGAGCTCTTTGTATATATTGGATATTAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGAGTCCAGCTTCTTGAGCTCTTTGTATATATTGGATATTAGTCCC  100

seq1  CTATCAGATTTAGGAATGGTAAAAATCCTTTCCCAATCTTTTGGTGGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAGATTTAGGAATGGTAAAAATCCTTTCCCAATCTTTTGGTGGACT  150

seq1  TTTTGTCTTATTGACGGTGTCTTTTGCCTTACAGAAGTTTAGCAATTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTATTGACGGTGTCTTTTGCCTTACAGAAGTTTAGCAATTTTA  200

seq1  TGAGGTCCCATTTGTCAATTCTTGATCTTACAGCGCAAGCCATTGCTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCCCATTTGTCAATTCTTGATCTTACAGCGCAAGCCATTGCTGAT  250

seq1  CTGTTTAGGAATTTTTCCCCTGTGCCCAAATCTTCAAGACTTTTCCCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTAGGAATTTTTCCCCTGTGCCCAAATCTTCAAGACTTTTCCCCAC  300

seq1  TTTCTCCTCTATTAATTTCAGTGTCTCTGGTCTTATGTGGAGTTCTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTCTATTAATTTCAGTGTCTCTGGTCTTATGTGGAGTTCTTTGA  350

seq1  TCCACTTAGACTTGAGCTTTGTACAAGGAGAGAGGAACGGATCGATTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTAGACTTGAGCTTTGTACAAGGAGAGAGGAACGGATCGATTTGA  400

seq1  GAAAGGTATTTATTGAACCATGTCTTCATATGATGCTTTCCTTGGTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTATTTATTGAACCATGTCTTCATATGATGCTTTCCTTGGTATTT  450

seq1  ACAGAATAGGTCAAAATTCATAGTGGAGAAAAAAGTGAATTGAAAAAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATAGGTCAAAATTCATAGTGGAGAAAAAAGTGAATTGAAAAAGTA  500

seq1  ACTGCTTTTCATAAACCTTTATGTAACTGTAGCTTTTCTCTTCAGGTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTTTCATAAACCTTTATGTAACTGTAGCTTTTCTCTTCAGGTGAC  550

seq1  ACTTTAAAGTCCTAAGTGAAACAGTACAAATTCAGAACTGAGTGTGGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAAGTCCTAAGTGAAACAGTACAAATTCAGAACTGAGTGTGGTGG  600

seq1  CAGATGCTCTACTCTCAGCAATCCCAGGGGACAAGGCTGGGGCATGAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCTCTACTCTCAGCAATCCCAGGGGACAAGGCTGGGGCATGAGTC  650

seq1  TGAAACTGATTTCTCAAGGGGGAAAGAAAAAAAAAGGAAAGAACATTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTGATTTCTCAAGGGGGAAAGAAAAAAAAAGGAAAGAACATTGAA  700

seq1  AGCGATTGTCTGAAATATATATAACAACAGAAAGTAATGTAATTTAAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGATTGTCTGAAATATATATAACAACAGAAAGTAATGTAATTTAAAGA  750

seq1  GGTTAAGGAGGTATAACTCAGCAATAGACTACATACTTAGCATCTCTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAGGAGGTATAACTCAGCAATAGACTACATACTTAGCATCTCTTCT  800

seq1  TTTCTTTCTTTTTTTTGTTTTTTGTTTTTTGAAAAGGGTTTCTCTGTGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTTTTTTGTTTTTTGTTTTTTGAAAAGGGTTTCTCTGTGTA  850

seq1  TCCCTGGCTGCCCTGAAACCCTCTCTGTGACCAGGCCTCAGGGATCTGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGCTGCCCTGAAACCCTCTCTGTGACCAGGCCTCAGGGATCTGCC  900

seq1  TGCCTCTACCTCCCAAGTGCTGGGACTAAAGGAGTGCACGGCCATCAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTACCTCCCAAGTGCTGGGACTAAAGGAGTGCACGGCCATCAAAG  950

seq1  AGTCGTGCTTAGTATCTTTATAGCCAATGCCAAAAAAGCAAAAGCAAAAA  1000
      ||||||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  AGTCGTGCTTAGTATCTTTATAGCCAATGCC-AAAAAGC-AAAGCAAAAA  998

seq1  CAAACCCCAAACTGAAATTTAGAAAGCAGCTGCTCTTGCATGTTAGTTTC  1050
      | ||||||||||||||||||||||||||||||||| ||||||||||||  
seq2  C-AACCCCAAACTGAAATTTAGAAAGCAGCTGCTC-TGCATGTTAGTT--  1044

seq1  CTCAGTATTATGTTGTAATTGTAACTCTGTGCTCCCATACTGTTGCCATA  1100
      |||||||||||||||||||||| |||||| ||| ||||||||||| ||||
seq2  CTCAGTATTATGTTGTAATTGT-ACTCTGGGCT-CCATACTGTTG-CATA  1091

seq1  GGATAGTGATGAAGAGGACGAAGATGCTGAAAACCTGGAGGC-TGTGAGC  1149
      | ||||||||||| |||||||  |||||| |||| || |||| |||||||
seq2  GAATAGTGATGAA-AGGACGAGAATGCTG-AAACTTGAAGGCTTGTGAGC  1139

seq1  AGTGGCAAAGTCACTAG-AAGTCCATCTCCAGCTCC  1184
      | || |  ||||||| | |||||||||| |||||||
seq2  A-TGCC--AGTCACTTGAAAGTCCATCTTCAGCTCC  1172