BAC Information

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BAC

Clone NameB6Ng01-071I21
Chromosome4 (Build37)
Map Location 147,129,499 - 147,130,470
singlet/doubletsinglet
Overlap geneLOC100041677
Upstream geneOTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652
Downstream geneLOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572, LOC100041733, LOC100041742
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071I21.bB6Ng01-071I21.g
ACCDH889221DH889222
length1,2141,080
definitionDH889221|Mus musculus domesticus DNA, BAC clone: B6Ng01-071I21, 5' end.DH889222|Mus musculus domesticus DNA, BAC clone: B6Ng01-071I21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctgtataggtatctaccccattttttgattgggttgtttggtt
tcttggtggttagcttcttgaatcctttatatatattggatattagcctt
ctatcaagtgtggggatagagaagtttgtttgtttgtttgtttttcccca
atgtgtaagttgccactttgttctatttgctatttcctttgcctgacaaa
tgctttctagtttcatgaggtcccatttgtcaatttgtgatctcagagcc
tgagccatttgagttctttttaggaaatttccccctgtgaaagtcagttt
gggtctctttcccactttatattctgtttccttgactgtatcttgtttta
tgttgagttccttgatccatttgaacttgagctttgtgcaaggtgataaa
tgtggatctatatcccgagcttttgttcccgccggcaagaacacactcag
gacaactggaatcttctgcattgcttacttcttcaggaggcagagagcga
aaagcaaaaccccgtcccttttatggagaattgtcctctgcctcggacgt
gtcgcttcctgattggctgcagctcatcggccgaattgtcgtcacgggaa
ggcagagcacatggagtggaaaacaacccaggcacatgtgcagattattt
gtttactacttagaacacaggatgtcagtgccatattgtaatggcgaatg
tgagtgtggctcctcacatctcccacttttcttttatttatgagcgatag
gccacccattctaatgaaagtggagatagaggtcaaatccccagtgtgta
ggtaaaggaaccgtacccaaaacctcctcccaggctcatcacccggaggg
gtcctggtatggtcccgtgtcgtttttcctgggggaaggacactttgaca
ctcaaccttcttgaaagatgtcatgtctccctagaataggctcatatatg
ccgcagagcccttctactgcagtgcttagccgtgcactctctcagctgct
gagcacactcactttatcccgtgcaatgagactagcctcgtggggtgcaa
ggctgaatggccatcgactattgcttagcatagataaccatatattcagg
gaagcaccatgtttctattgctgcaggcctgcataacacttttcttctag
tgctagctcagacacaacgcactatccagcaattattccaatattccccc
tatcattctagagg
gaattctatgatgaataccaagatggaattttcgggtaaagcatttgtca
cattcactgcatttgtaaggtttctctccggtgtgaattctctgatgagc
tctcaaattaaatttgtgggtaaagcatttgtcacattcactacatttgt
gaggtttctctcctgtatgaattatctgatgagctctcaaattaaatttg
tgggtaaagcatttgtcacattcactacatttgtgaggtttctctcctgt
atgaattctctgatgataattaagacgggatttgtgagtaaagcatttgt
cacattcactacatttgtaaagtttctctcccgtatgaattctctgatga
gctctcaaattaaatttgtgggtaaagcatttgtcacattcactacattt
gtgaggtttctctcctgtatgaattccctgatgacttctaagatggatct
gatgggtaaagcatttgtcacttttactacttttgtaaggtttctttcca
tgataaattctctgctgagtttgaagtttttctctctgggtaagatattt
gtgaaattcactgcatttgtaagggttcactccagtatttttttgtttca
ccatgtctttatgtttagaaacaaaaaccttctcaaattctgcatttcgc
ttgtgttttttcttctgcatgtggattccttgattgagactaatggtaga
aaacaaacttacactgtttacagagtcattgtatttgcaaacttctttag
tgttcctgggcttaagtcttttttggttccagtattgaagagagctgtga
taagttttgtaaggtgtatattggggggaatcaagaagcaccttgctaag
cttgtcccatttagaagacttctcttgaatattcatgtgttcatggacaa
tgtactggctgtcttgatccaagaccttcctatactttccacgtatgcaa
tgattttctgaaaaaacaaaaacaaaatggggcaattagagatgacatga
ttacttatataagagtaaggacttcataatcagtgagcttatggattcgt
actctctcaagagaaggttcttttctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_147129499_147130470
seq2: B6Ng01-071I21.g_178_1146

seq1  ATTTGTGGGTAAAGCATTTGTCACATTCACTACATTTGTAAGGTTTCTCT  50
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATTTGTGGGTAAAGCATTTGTCACATTCACTACATTTGTGAGGTTTCTCT  50

seq1  CCTGTATGAATTCTCTGATGAACGCTAAGATGAGATTTTTGGGTAAAGCA  100
      |||||||||||| |||||||| | || | || | |||| |||||||||||
seq2  CCTGTATGAATTATCTGATGAGCTCTCAAATTAAATTTGTGGGTAAAGCA  100

seq1  TTTGTCACATTCACTACATTTGTAAGGTTTCTCTCCTGTATGAATTCTCT  150
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTTGTCACATTCACTACATTTGTGAGGTTTCTCTCCTGTATGAATTCTCT  150

seq1  GATGCATACTAAAACTGAATTTGTGTTTAAAACATTTGTCACATTCACTG  200
      ||||   | ||| || | |||||||  |||| ||||||||||||||||| 
seq2  GATGATAATTAAGACGGGATTTGTGAGTAAAGCATTTGTCACATTCACTA  200

seq1  CATTTGTAAGGGTTCTCTCCTGTATGAATTCTCTGATGAATATTAAGATG  250
      ||||||||| | |||||||| ||||||||||||||||||    | | || 
seq2  CATTTGTAAAGTTTCTCTCCCGTATGAATTCTCTGATGAGCTCTCAAATT  250

seq1  GGATTTGTGGGTAAAGCATTTGTCACATTCACTACATTTGTAAATTTTCT  300
        ||||||||||||||||||||||||||||||||||||||| |  |||||
seq2  AAATTTGTGGGTAAAGCATTTGTCACATTCACTACATTTGTGAGGTTTCT  300

seq1  CTTCTGCATGAATTCCCTGATGGATACTAAGATGGATCTGATGGGTAAAG  350
      || ||| |||||||||||||||  | ||||||||||||||||||||||||
seq2  CTCCTGTATGAATTCCCTGATGACTTCTAAGATGGATCTGATGGGTAAAG  350

seq1  CATTTGTCACTTTTACTACTTCTGTAAGGTTTCTTTCCATGATAAATTCT  400
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CATTTGTCACTTTTACTACTTTTGTAAGGTTTCTTTCCATGATAAATTCT  400

seq1  CTGCTGACTTTGAAGTTTTTCTCTCTGGGTAAGATATTTGTCAAATTCAC  450
      ||||||| ||||||||||||||||||||||||||||||||| ||||||||
seq2  CTGCTGAGTTTGAAGTTTTTCTCTCTGGGTAAGATATTTGTGAAATTCAC  450

seq1  TACATTTGTAAGGGTTCACTCCAGTATTGTTTCGTTTCACCATGACTTTA  500
      | |||||||||||||||||||||||||| ||| ||||||||||| |||||
seq2  TGCATTTGTAAGGGTTCACTCCAGTATTTTTTTGTTTCACCATGTCTTTA  500

seq1  TGTTTAGAAACAAAAACCTTCTCAAATTCTGCATTTCGGTTGTGTTTTTT  550
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGTTTAGAAACAAAAACCTTCTCAAATTCTGCATTTCGCTTGTGTTTTTT  550

seq1  CTTCTGCAGGTGGATTCCTTGATTGAGACTAATGGTAGAAAACAAACTTA  600
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCATGTGGATTCCTTGATTGAGACTAATGGTAGAAAACAAACTTA  600

seq1  CACTGTTTACAGAGTCATTGTATTTGCAAACTTCTTTAGTGTTCCTGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTTACAGAGTCATTGTATTTGCAAACTTCTTTAGTGTTCCTGGGC  650

seq1  TTAAGTCTTTTTTGGTTCGAGTATTGAAGAGAGCTGTGATTAGTTTTGTA  700
      |||||||||||||||||| ||||||||||||||||||||| |||||||||
seq2  TTAAGTCTTTTTTGGTTCCAGTATTGAAGAGAGCTGTGATAAGTTTTGTA  700

seq1  AGGTGTACATTGGGGGGATTCAAGAATCACCTTGATAAGCTTGTCCCATT  750
      ||||||| |||||||||| ||||||| ||||||| |||||||||||||||
seq2  AGGTGTATATTGGGGGGAATCAAGAAGCACCTTGCTAAGCTTGTCCCATT  750

seq1  TAGAAGACTTCTCTTGAATATTCACGTGTTCATGGACAATGTACTGGCTC  800
      |||||||||||||||||||||||| |||||||||||||||||||||||| 
seq2  TAGAAGACTTCTCTTGAATATTCATGTGTTCATGGACAATGTACTGGCTG  800

seq1  TCTTCACCCAAGACCTTCCCATACTTTCCATGTATGCAATGATTTTCTGA  850
      |||| | |||||||||||| |||||||||| |||||||||||||||||||
seq2  TCTTGATCCAAGACCTTCCTATACTTTCCACGTATGCAATGATTTTCTGA  850

seq1  AAAAAACAAAAACAAAAACAAAATGGGGCAATTAGAGGTGACATGAATTA  900
             |||||||||||||||||||||||||||||| ||||||| ||||
seq2  -------AAAAACAAAAACAAAATGGGGCAATTAGAGATGACATG-ATTA  892

seq1  CTTATATAAGGAAGAAGGGACTCAATAACCAGTGAGCTTATGGATTCATA  950
      ||||||||||  || | |||||  |||| |||||||||||||||||| ||
seq2  CTTATATAAG--AGTAAGGACTTCATAATCAGTGAGCTTATGGATTCGTA  940

seq1  --CTCTCAAGAGAGG-----TTTCTCTCT  972
        ||||||||||| |     |||||||||
seq2  CTCTCTCAAGAGAAGGTTCTTTTCTCTCT  969