BAC Information

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BAC

Clone NameB6Ng01-071M22
Chromosome4 (Build37)
Map Location 76,523,996 - 76,648,364
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667845, Ptprd, LOC667858, LOC667862
Downstream geneLOC100039974
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071M22.bB6Ng01-071M22.g
ACCDH889400DH889401
length8911,159
definitionDH889400|Mus musculus domesticus DNA, BAC clone: B6Ng01-071M22, 5' end.DH889401|Mus musculus domesticus DNA, BAC clone: B6Ng01-071M22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,523,996 - 76,524,885)(76,647,200 - 76,648,364)
sequence
gaattcttccaactccaactccaaaaaatactgtttacataagtctgggg
aataaatttgtcataaaagtggttctgagaacatatcaaaacaaaacaca
cactaaggaatattgagtagctgttttttaggtaagaaggaaattttagt
ttgtgtatcaagtaatctttcattctatcgtgaaagcatattgtgtttaa
caacagtgagttctcagtatgcagttttacagagtgaaatcagagaaata
taatgaaatgaatttgttccatgcagagaaattagaagataaattcctta
gatattcaatgtcaggattcaaccttgccagccaatggtctattcaactt
caaaacatatttgttcttaagttttattggtactaatttcttataaaact
tacaaataacacagatttaatgggatttgctatggatcccattatgagac
atatgtttggttgtcactttggtatcactgtaatactgacaagactggat
atgctttctttcattatatagtacagatacattttaagagagaaatgggt
tacttttctccaaggaattgcttctaagatatttgactgactttattcct
tataattgaatgctgattctaacatttggtgttttgtgtttcttgaataa
gaagcccccaacagaggagaaaataacatgattccttgaataattacgaa
aacatcttaacctttatctttggtagtccagtagaaaatttggttagatt
ttatcattgcaataacataaggcatcctttccaagatacttcccttgggt
tgaagctgatatcatttgaaatgtaagtgaataaaatgattaataaaaat
taaatacagagaggggggagggagagagagaagagagggag
gaattcaaaactttagggagaaagaattatggcctttcaagcactcaaaa
taccttttgagatgtatgtgaaaaagataattgaagagtttggattgtcc
attgagaggatgtgggaagacggtttgaatccaatcaaacattgttttaa
ataataggaggtgaattctcaatagaactgtgcacattgtaagaggggga
aaggtgttacaattgaaaattctgcttttccctagaaattcactttattc
tttagaaatgtagatttgtctcctgaagtccaaaattgcaatggtattag
tagttagattgttggataggccaagcacagggaaatataatgaaacctga
catttagtaggtgaccatcacatggctcaaagtacatttactgatataga
aatgctttttgattcattcctgataaaaaccctcagagaccttacagacc
aggaaatcagagcttaaagaaatctgatgtatatattcattccatgttca
tgatattaaaagtgacagcaccaagattataagtaaagttacattgacaa
atagaagctttggcctccatagccttttttccagacaattcatgattcct
actttggttttacagacaacgatgaataaacttttaaccagtagaagttg
acagcacatcccattattaatatttcatttacttttatttgtataattaa
tctcctttacattaataaccggattaataaagaatctgatttaaaagtgg
atatgttgttcgaattgatgttctcatcctcactgactgctgaaagtaag
cttgcattgaggatatctgtcatgtttgatacacaacatagtttgctgct
acactttactatccaaaatatgccttaaacctcccctgtcacttctgaaa
attacttaattgcatcccttccctaaggtactgttttagaacttcatgaa
agagttacaaaactggcctaaattttgctaccatattagtagagtagaat
gttgatttgtttatcatgcccaaatgcttgagcatttggtgaaagtaggt
cctcttccaagcatagtgataagaatagagaagtctaacatgatcccctg
aaagaatttgtttaaagccacgaagtgagggtaaatagaatactttcttg
taaatttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_76523996_76524885
seq2: B6Ng01-071M22.b_45_935

seq1  GAATTCTTCCAACTCCAACTCCAAAAAATACTGTTTACATAAGTCTGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCAACTCCAACTCCAAAAAATACTGTTTACATAAGTCTGGGG  50

seq1  AATAAATTTGTCATAAAAGTGGTTCTGAGAACATATCAAAACAAAACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTTGTCATAAAAGTGGTTCTGAGAACATATCAAAACAAAACACA  100

seq1  CACTAAGGAATATTGAGTAGCTGTTTTTTAGGTAAGAAGGAAATTTTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAGGAATATTGAGTAGCTGTTTTTTAGGTAAGAAGGAAATTTTAGT  150

seq1  TTGTGTATCAAGTAATCTTTCATTCTATCGTGAAAGCATATTGTGTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTATCAAGTAATCTTTCATTCTATCGTGAAAGCATATTGTGTTTAA  200

seq1  CAACAGTGAGTTCTCAGTATGCAGTTTTACAGAGTGAAATCAGAGAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTGAGTTCTCAGTATGCAGTTTTACAGAGTGAAATCAGAGAAATA  250

seq1  TAATGAAATGAATTTGTTCCATGCAGAGAAATTAGAAGATAAATTCCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAATGAATTTGTTCCATGCAGAGAAATTAGAAGATAAATTCCTTA  300

seq1  GATATTCAATGTCAGGATTCAACCTTGCCAGCCAATGGTCTATTCAACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTCAATGTCAGGATTCAACCTTGCCAGCCAATGGTCTATTCAACTT  350

seq1  CAAAACATATTTGTTCTTAAGTTTTATTGGTACTAATTTCTTATAAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACATATTTGTTCTTAAGTTTTATTGGTACTAATTTCTTATAAAACT  400

seq1  TACAAATAACACAGATTTAATGGGATTTGCTATGGATCCCATTATGAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATAACACAGATTTAATGGGATTTGCTATGGATCCCATTATGAGAC  450

seq1  ATATGTTTGGTTGTCACTTTGGTATCACTGTAATACTGACAAGACTGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTTGGTTGTCACTTTGGTATCACTGTAATACTGACAAGACTGGAT  500

seq1  ATGCTTTCTTTCATTATATAGTACAGATACATTTTAAGAGAGAAATGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTCTTTCATTATATAGTACAGATACATTTTAAGAGAGAAATGGGT  550

seq1  TACTTTTCTCCAAGGAATTGCTTCTAAGATATTTGACTGACTTTATTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTCTCCAAGGAATTGCTTCTAAGATATTTGACTGACTTTATTCCT  600

seq1  TATAATTGAATGCTGATTCTAACATTTGGTGTTTTGTGTTTCTTGAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTGAATGCTGATTCTAACATTTGGTGTTTTGTGTTTCTTGAATAA  650

seq1  GAAGCCCCCAACAGAGGAGAAAATAACATGATTCCTTGAATAATTACGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCCCAACAGAGGAGAAAATAACATGATTCCTTGAATAATTACGAA  700

seq1  AACATCTTAACCTTTATCTTTGGTAGTCCAGTAGAAAATTTGGTTAGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTTAACCTTTATCTTTGGTAGTCCAGTAGAAAATTTGGTTAGATT  750

seq1  TTATCATTGCAATAACATAAGGCATCCTTTCCAAGATACTTCCCTTGGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATTGCAATAACATAAGGCATCCTTTCCAAGATACTTCCCTTGGGT  800

seq1  TGAAGCTGATATCATTTGAAATGTAAGTGAATAAAATGATTAATAAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTGATATCATTTGAAATGTAAGTGAATAAAATGATTAATAAAAAT  850

seq1  TAAATACAGAGAGGGGGGAGGGAGAGAGAG-AGAGAGGGAG  890
      |||||||||||||||||||||||||||||| ||||||||||
seq2  TAAATACAGAGAGGGGGGAGGGAGAGAGAGAAGAGAGGGAG  891

seq1: chr4_76647200_76648364
seq2: B6Ng01-071M22.g_69_1227 (reverse)

seq1  TCAAATTTTTACAAGAAAGTTATTCTAATTTACACTCACTTTCGTGCTTT  50
      |||||  |||||||||||| |||||| |||||| ||||| ||||||  ||
seq2  TCAAA--TTTACAAGAAAG-TATTCT-ATTTACCCTCAC-TTCGTGGCTT  45

seq1  TAAACAAATTCTTTCAGAGAATCATG-TAGACTTCTCTA-TCTTATTCAC  98
      ||||||||||||||||| | |||||| |||||||||||| ||||| ||||
seq2  TAAACAAATTCTTTCAGGGGATCATGTTAGACTTCTCTATTCTTA-TCAC  94

seq1  TATGCTTTGGAAGA-GACCTACCTTTCACCAAATTGCTTCAAGCATTT-G  146
      ||||| |||||||| |||||| ||||||||||| ||| |||||||||| |
seq2  TATGC-TTGGAAGAGGACCTA-CTTTCACCAAA-TGC-TCAAGCATTTGG  140

seq1  GCATGATAAACAAATCAACATTCTACTCTACTAATATGGTAGCAAAATTT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGATAAACAAATCAACATTCTACTCTACTAATATGGTAGCAAAATTT  190

seq1  AGGCCAGTTTTGTAACTCTTTCATGAAGTTCTAAAACAGTACCTTAGGGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGTTTTGTAACTCTTTCATGAAGTTCTAAAACAGTACCTTAGGGA  240

seq1  AGGGATGCAATTAAGTAATTTTCAGAAGTGACAGGGGAGGTTTAAGGCAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGCAATTAAGTAATTTTCAGAAGTGACAGGGGAGGTTTAAGGCAT  290

seq1  ATTTTGGATAGTAAAGTGTAGCAGCAAACTATGTTGTGTATCAAACATGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGATAGTAAAGTGTAGCAGCAAACTATGTTGTGTATCAAACATGA  340

seq1  CAGATATCCTCAATGCAAGCTTACTTTCAGCAGTCAGTGAGGATGAGAAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATCCTCAATGCAAGCTTACTTTCAGCAGTCAGTGAGGATGAGAAC  390

seq1  ATCAATTCGAACAACATATCCACTTTTAAATCAGATTCTTTATTAATCCG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTCGAACAACATATCCACTTTTAAATCAGATTCTTTATTAATCCG  440

seq1  GTTATTAATGTAAAGGAGATTAATTATACAAATAAAAGTAAATGAAATAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTAATGTAAAGGAGATTAATTATACAAATAAAAGTAAATGAAATAT  490

seq1  TAATAATGGGATGTGCTGTCAACTTCTACTGGTTAAAAGTTTATTCATCG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATGGGATGTGCTGTCAACTTCTACTGGTTAAAAGTTTATTCATCG  540

seq1  TTGTCTGTAAAACCAAAGTAGGAATCATGAATTGTCTGGAAAAAAGGCTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGTAAAACCAAAGTAGGAATCATGAATTGTCTGGAAAAAAGGCTA  590

seq1  TGGAGGCCAAAGCTTCTATTTGTCAATGTAACTTTACTTATAATCTTGGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCCAAAGCTTCTATTTGTCAATGTAACTTTACTTATAATCTTGGT  640

seq1  GCTGTCACTTTTAATATCATGAACATGGAATGAATATATACATCAGATTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCACTTTTAATATCATGAACATGGAATGAATATATACATCAGATTT  690

seq1  CTTTAAGCTCTGATTTCCTGGTCTGTAAGGTCTCTGAGGGTTTTTATCAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGCTCTGATTTCCTGGTCTGTAAGGTCTCTGAGGGTTTTTATCAG  740

seq1  GAATGAATCAAAAAGCATTTCTATATCAGTAAATGTACTTTGAGCCATGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAATCAAAAAGCATTTCTATATCAGTAAATGTACTTTGAGCCATGT  790

seq1  GATGGTCACCTACTAAATGTCAGGTTTCATTATATTTCCCTGTGCTTGGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTCACCTACTAAATGTCAGGTTTCATTATATTTCCCTGTGCTTGGC  840

seq1  CTATCCAACAATCTAACTACTAATACCATTGCAATTTTGGACTTCAGGAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCAACAATCTAACTACTAATACCATTGCAATTTTGGACTTCAGGAG  890

seq1  ACAAATCTACATTTCTAAAGAATAAAGTGAATTTCTAGGGAAAAGCAGAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCTACATTTCTAAAGAATAAAGTGAATTTCTAGGGAAAAGCAGAA  940

seq1  TTTTCAATTGTAACACCTTTCCCCCTCTTACAATGTGCACAGTTCTATTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATTGTAACACCTTTCCCCCTCTTACAATGTGCACAGTTCTATTG  990

seq1  AGAATTCACCTCCTATTATTTAAAACAATGTTTGATTGGATTCAAACCGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCACCTCCTATTATTTAAAACAATGTTTGATTGGATTCAAACCGT  1040

seq1  CTTCCCACATCCTCTCAATGGACAATCCAAACTCTTCAATTATCTTTTTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCACATCCTCTCAATGGACAATCCAAACTCTTCAATTATCTTTTTC  1090

seq1  ACATACATCTCAAAAGGTATTTTGAGTGCTTGAAAGGCCATAATTCTTTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATCTCAAAAGGTATTTTGAGTGCTTGAAAGGCCATAATTCTTTC  1140

seq1  TCCCTAAAGTTTTGAATTC  1165
      |||||||||||||||||||
seq2  TCCCTAAAGTTTTGAATTC  1159