BAC Information

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BAC

Clone NameB6Ng01-072N17
Chromosome4 (Build37)
Map Location 28,457,719 - 28,578,895
singlet/doubletdoublet
Overlap geneLOC100040773
Upstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735, LOC230044, LOC665141
Downstream geneEpha7, LOC100040907, LOC100040811
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072N17.bB6Ng01-072N17.g
ACCDH890150DH890151
length1,1651,090
definitionDH890150|Mus musculus domesticus DNA, BAC clone: B6Ng01-072N17, 5' end.DH890151|Mus musculus domesticus DNA, BAC clone: B6Ng01-072N17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,457,719 - 28,458,880)(28,577,810 - 28,578,895)
sequence
gaattctgcatagcattctgaatgctggaattgcaggatgaatcccaact
cattcaagaaaaacatttttgtaatccttcagtttgcatcatgaaaattc
atttcatacatatgtcgtaatccaaaaatgagccagctaggttatggcac
caatctcagggaaaaaccgattccttcacaacaatttagaccagtttatg
gtacagttcaattaaccaattttaccgttcagagtttaaccctagtccca
gaaaacagcatgagcgtgtgtaaagaaacgtagtttctatctacctcaat
aagggaaataaaataattaattcagactagaagaaagcctttgagaatac
atcttcaaacaagtcaccagtccctacatcgatgtcacctctgatttctc
acctatgtctaaatttgaccatatttattactttagatattcctatcgat
cttttccataatttctctgtttcacaatttaagtgaattctaaacactat
ctttagaccaataaagtgatttgccacactatagacgtcctccaatgttg
aacacaattgctttttagtctgtgctgacactgctgtgaatactaggagc
tctacattattttatcttacttcagtcttagagtagccatgtgtacctgg
gtactagtgtttggctttcagagtatcgatataccactttctagtagtgt
tcaacttgtccttgtatatgtgtttggtataatcttggaaattttctaca
tagctatatcagtgaggaatctctctggtaaatatataaaacgaaagaca
atatttatctatcttcagtacttagaattagtgatccatcaggaagaggt
atgctagcgatggggtaagcatcctatctatctactgtgtacacttgtct
ctcctcttacaacttgttgaaaggagctactgtcctttaaattagctcca
ggctttgtgccatagataggagactccacagcttttctagtgtttacata
acagttgatgaactcctgcatgcaatcctcatgggatacataattgggtc
tctactggtattttagtttatttccattaaggtttaatgacagccatgga
acagtcttgtaattgataaaaacgctcttaatgagaagaatataaattct
tggaggggatgtacc
gaattcacatggagcagcccatgactccagctgcatatgtagcagaggat
gactttgttgggcatcaatgggaagagtggcccttggtcctgtgtagggt
cgatgctccagtgtaggggaattccaggacagggaagcaggagtgggtgg
gtgggtagtggagcaccctcatagaagcaggcagagaatggatgagatag
ggggtttcggagggcaacccagtaaaggcataacattggaaatataagta
aagaaaatatctaataaaatttaaaaatgatcactgtgactttttctgag
aataaattctgctagaacaaaggttagagcagatagtacaatagctaagg
attgtacaactggtcaggaacagtactagtagcttagacactacaatgat
aatgaatatttcaaaagtggtcacattttacaagtgcagttcatcctcta
tatccatctatatctatatccatttggatccatgtagacatccatggatc
caaacagcctcaaataaaaagtaatctaaccaccaccccaatttgacata
tctataccagagttactaaaagcagtgtaagacatttgagatagatataa
tcctttgtttaacttaagtaaaagatggactgtagtctataaaatataat
tactaacttaaataatttacttataaaataatttcttttcatatgtaact
atgaaacaatttttcattaaaataactttttaaaatatcctttttaatct
tatttttctgaaattttgttcctattctttattcttatatagctttacat
atatatatatttttaaaaaaggaatttgatacacctatttataaaagtac
tcacaattttgagctttttatttattttcacattttactagaaattttcc
atacagattatggtaatgctaattttatcttaaggagagccattatggta
tttttgatatttcacctatagccaaggtatcagactacttctagttacta
ttaacaccctttacttttaggctgcttcaggctaaaaggaggcaaagact
ttgattatcagaaatgccataaatttactgggtttaagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_28457719_28458880
seq2: B6Ng01-072N17.b_46_1210

seq1  GAATTCTGCATAGCATTCTGAATGCTGGAATTGCAGGATGAATCCCAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCATAGCATTCTGAATGCTGGAATTGCAGGATGAATCCCAACT  50

seq1  CATTCAAGAAAAACATTTTTGTAATCCTTCAGTTTGCATCATGAAAATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAAGAAAAACATTTTTGTAATCCTTCAGTTTGCATCATGAAAATTC  100

seq1  ATTTCATACATATGTCGTAATCCAAAAATGAGCCAGCTAGGTTATGGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATACATATGTCGTAATCCAAAAATGAGCCAGCTAGGTTATGGCAC  150

seq1  CAATCTCAGGGAAAAACCGATTCCTTCACAACAATTTAGACCAGTTTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTCAGGGAAAAACCGATTCCTTCACAACAATTTAGACCAGTTTATG  200

seq1  GTACAGTTCAATTAACCAATTTTACCGTTCAGAGTTTAACCCTAGTCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGTTCAATTAACCAATTTTACCGTTCAGAGTTTAACCCTAGTCCCA  250

seq1  GAAAACAGCATGAGCGTGTGTAAAGAAACGTAGTTTCTATCTACCTCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAGCATGAGCGTGTGTAAAGAAACGTAGTTTCTATCTACCTCAAT  300

seq1  AAGGGAAATAAAATAATTAATTCAGACTAGAAGAAAGCCTTTGAGAATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAAATAAAATAATTAATTCAGACTAGAAGAAAGCCTTTGAGAATAC  350

seq1  ATCTTCAAACAAGTCACCAGTCCCTACATCGATGTCACCTCTGATTTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCAAACAAGTCACCAGTCCCTACATCGATGTCACCTCTGATTTCTC  400

seq1  ACCTATGTCTAAATTTGACCATATTTATTACTTTAGATATTCCTATCGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATGTCTAAATTTGACCATATTTATTACTTTAGATATTCCTATCGAT  450

seq1  CTTTTCCATAATTTCTCTGTTTCACAATTTAAGTGAATTCTAAACACTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCATAATTTCTCTGTTTCACAATTTAAGTGAATTCTAAACACTAT  500

seq1  CTTTAGACCAATAAAGTGATTTGCCACACTATAGACGTCCTCCAATGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGACCAATAAAGTGATTTGCCACACTATAGACGTCCTCCAATGTTG  550

seq1  AACACAATTGCTTTTTAGTCTGTGCTGACACTGCTGTGAATACTAGGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAATTGCTTTTTAGTCTGTGCTGACACTGCTGTGAATACTAGGAGC  600

seq1  TCTACATTATTTTATCTTACTTCAGTCTTAGAGTAGCCATGTGTACCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATTATTTTATCTTACTTCAGTCTTAGAGTAGCCATGTGTACCTGG  650

seq1  GTACTAGTGTTTGGCTTTCAGAGTATCGATATACCACTTTCTAGTAGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAGTGTTTGGCTTTCAGAGTATCGATATACCACTTTCTAGTAGTGT  700

seq1  TCAACTTGTCCTTGTATATGTGTTTGGTATAATCTTGGAAATTTTCTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTGTCCTTGTATATGTGTTTGGTATAATCTTGGAAATTTTCTACA  750

seq1  TAGCTATATCAGTGAGGAATCTCTCTGGTAAATATATAAAACGAAAGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTATATCAGTGAGGAATCTCTCTGGTAAATATATAAAACGAAAGACA  800

seq1  ATATTTATCTATCTTCAGTACTTAGAATTAGTGATCCATCAGGAAGAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATCTATCTTCAGTACTTAGAATTAGTGATCCATCAGGAAGAGGT  850

seq1  ATGCTAGCGATGGGGTAAGCATCCTATCTATCTACTGTGTACACTTGTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAGCGATGGGGTAAGCATCCTATCTATCTACTGTGTACACTTGTCT  900

seq1  CTCCTCTTACAACTTGTTGAAAGGAGCTACTGTCCTTTAAATTAGCTCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTTACAACTTGTTGAAAGGAGCTACTGTCCTTTAAATTAGCTCCA  950

seq1  GGCTTTGTGCCATAGATAGGAGACTCCACAGC-TTTCTAGTGTTTACATA  999
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGCTTTGTGCCATAGATAGGAGACTCCACAGCTTTTCTAGTGTTTACATA  1000

seq1  ACAGTTGATGAACTCCTGCATGCAATCCTCATGGGATACAT-ATTTGGTC  1048
      ||||||||||||||||||||||||||||||||||||||||| ||| ||||
seq2  ACAGTTGATGAACTCCTGCATGCAATCCTCATGGGATACATAATTGGGTC  1050

seq1  TCTTACT-GTATTCTAG-TTATTTCCATTAAGGTTTAATGACAGCCATGG  1096
      || |||| ||||| ||| ||||||||||||||||||||||||||||||||
seq2  TC-TACTGGTATTTTAGTTTATTTCCATTAAGGTTTAATGACAGCCATGG  1099

seq1  AACAGTCTTGTAATTGAT-AAGACGCTTCTAATGAGGAAGATTATAAATT  1145
      |||||||||||||||||| || |||||  |||||| ||||| ||||||||
seq2  AACAGTCTTGTAATTGATAAAAACGCTCTTAATGA-GAAGAATATAAATT  1148

seq1  CTTTGAAGTGATGTACC  1162
      ||| || | ||||||||
seq2  CTTGGAGGGGATGTACC  1165

seq1: chr4_28577810_28578895
seq2: B6Ng01-072N17.g_65_1154 (reverse)

seq1  GTCTTAAA-CCAGTAATTTTGTGGCACTTCTGATAATCAAAGTCTTTGAC  49
      |||||||| ||||||| ||| ||||| ||||||||||||||||||||| |
seq2  GTCTTAAACCCAGTAAATTTATGGCATTTCTGATAATCAAAGTCTTTG-C  49

seq1  TTCCTATTTAG-CTATAGCAGACTAAAAGTAAAGGGTGTTAATAGTAACT  98
       |||| ||||| ||  ||||| ||||||||||||||||||||||||||||
seq2  CTCCT-TTTAGCCTGAAGCAGCCTAAAAGTAAAGGGTGTTAATAGTAACT  98

seq1  AGAAGTAGTCTGATACTTTGGCTATA-GTGAAATATCAAATATATCATAA  147
      |||||||||||||||| ||||||||| ||||||||||||| ||| |||||
seq2  AGAAGTAGTCTGATACCTTGGCTATAGGTGAAATATCAAAAATACCATAA  148

seq1  TGGCTCTCCTTAGGATAAAATTAGCATTACCATAATCTGTATGGAAAATT  197
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTCCTTAAGATAAAATTAGCATTACCATAATCTGTATGGAAAATT  198

seq1  TCTAGTAAAATGTGAAAATAAATAAAAAGCTCAAAATTGTGAGTACTTTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTAAAATGTGAAAATAAATAAAAAGCTCAAAATTGTGAGTACTTTT  248

seq1  ATAAATAGTTGTATCAAATTCCTTTTTTAAAAATATATATATATGTAAAG  297
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAGGTGTATCAAATTCCTTTTTTAAAAATATATATATATGTAAAG  298

seq1  CTATATAAGAATAAAGAATAGGAACAAAATTTCAG-AAAATAAGATTAAA  346
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTATATAAGAATAAAGAATAGGAACAAAATTTCAGAAAAATAAGATTAAA  348

seq1  AAGGATATTTTAAAAAGTTATTTTAATG-AAAATTGTTTCATAGTTACAT  395
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAGGATATTTTAAAAAGTTATTTTAATGAAAAATTGTTTCATAGTTACAT  398

seq1  ATGAAAAGAAATTATTTTATAAGTAAATTATTTAAGTTAGTAATTATA-T  444
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATGAAAAGAAATTATTTTATAAGTAAATTATTTAAGTTAGTAATTATATT  448

seq1  TTATAGACTACAGTCCATCTTTTACTTAAGTTAAACAAAGGATTATATCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGACTACAGTCCATCTTTTACTTAAGTTAAACAAAGGATTATATCT  498

seq1  ATCTCAAATGTCTTACACTGCTTTTAGTAACTCTGGTATAGATATGTCAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAAATGTCTTACACTGCTTTTAGTAACTCTGGTATAGATATGTCAA  548

seq1  ATTGGGGTGGTGGTTAGATTACTTTTTATTTGAGGCTGTTTGGATCCATG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGGTGGTGGTTAGATTACTTTTTATTTGAGGCTGTTTGGATCCATG  598

seq1  GATGTCTACATGGATCCAAATGGATATAGATATAGATGGATATAGAGGAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTACATGGATCCAAATGGATATAGATATAGATGGATATAGAGGAT  648

seq1  GAACTGCACTTGTAAAATGTGACCACTTTTGAAATATTCATTATCATTGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGCACTTGTAAAATGTGACCACTTTTGAAATATTCATTATCATTGT  698

seq1  AGTGTCTAAGCTACTAGTACTGTTCCTGACCAGTTGTACAATCCTTAGCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTAAGCTACTAGTACTGTTCCTGACCAGTTGTACAATCCTTAGCT  748

seq1  ATTGTACTATCTGCTCTAACCTTTGTTCTAGCAGAATTTATTCTCAGAAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTACTATCTGCTCTAACCTTTGTTCTAGCAGAATTTATTCTCAGAAA  798

seq1  AAGTCACAGTGATCATTTTTAAATTTTATTAGATATTTTCTTTACTTATA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACAGTGATCATTTTTAAATTTTATTAGATATTTTCTTTACTTATA  848

seq1  TTTCCAATGTTATGCCTTTACTGGGTTGCCCTCCGAAACCCCCTATCTCA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAATGTTATGCCTTTACTGGGTTGCCCTCCGAAACCCCCTATCTCA  898

seq1  TCCATTCTCTGCCTGCTTCTATGAGGGTGCTCCACTACCCACCCACCCAC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCTCTGCCTGCTTCTATGAGGGTGCTCCACTACCCACCCACCCAC  948

seq1  TCCTGCTTCCCTGTCCTGGAATTCCCCTACACTGGAGCATCGACCCTACA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTTCCCTGTCCTGGAATTCCCCTACACTGGAGCATCGACCCTACA  998

seq1  CAGGACCAAGGGCCACTCTTCCCATTGATGCCCAACAAAGTCATCCTCTG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCAAGGGCCACTCTTCCCATTGATGCCCAACAAAGTCATCCTCTG  1048

seq1  CTACATATGCAGCTGGAGTCATGGGCTGCTCCATGTGAATTC  1086
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATATGCAGCTGGAGTCATGGGCTGCTCCATGTGAATTC  1090