BAC Information

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BAC

Clone NameB6Ng01-073A11
Chromosome4 (Build37)
Map Location 145,419,051 - 145,489,698
singlet/doubletdoublet
Overlap gene1700029I01Rik, LOC236069, LOC384084
Upstream geneLOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704
Downstream geneLOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073A11.bB6Ng01-073A11.g
ACCDH890275DH890276
length1,159943
definitionDH890275|Mus musculus domesticus DNA, BAC clone: B6Ng01-073A11, 5' end.DH890276|Mus musculus domesticus DNA, BAC clone: B6Ng01-073A11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,419,051 - 145,420,218)(145,488,659 - 145,489,698)
sequence
gaattcataaaggagagaaaccttacaaatgtagtgaatgtgacaaatgc
tttactgaaaaaggccatcagagaattcatacaggagagatagcttacaa
atagtttgtatgtgacaaatacaatacaatgtcagtctgagaaatcatca
gtttttaatacagtagagaatatttataaatgaagtgaacgagacaatcc
tttaccaagatatatcatcttaaaaatcattagagaatacttacagaaga
gaaacttttcaattatatcgaaggtatgaatcctttactcttggcctatt
tcctagaatgttaacagtgaatacttacaggatacaaacttaactcatgc
attgtatgaagaaatatctttgacttcatttcaggtcaaagagaatatct
aataactttttaggtgaaagtatttctgttggggaaagtgtggcctgtgt
tttattcacgttctattcttgacaacaattgaggctccacactagagaat
tagtatgattatgaaaatcatgtgaaaactttcatgcaatgttcaaatct
taaataatgtcaactattttttgcttgaagaaactctgaaaatgtaaaaa
tgtagaaagcttttcatgacacctttttacttgttcacccttaaatgtta
caagatgaagacaagttgggaagtgaggagatattattgtgtaacacatt
cattgagacagaaataatccatttcaaaaggaaactatttaaggtcttta
atgcagtcctcaaaatatctaataaaactggtaacattctgtatatttaa
ttcaaatgagccaattgagaaaaattatacttaaaagaatatctggcaaa
ctgagccacccagacagcatattctttatcctataaatatgcttacagat
gttaagtgtgcttcgagtattcagtaataataattcttctcaaatgcttg
gttcacattataggataacaactgatcattatttcccctttaattgaacg
aaagtcctataggctctggaaaaatgctggaccgtgatacatatttacag
gacatagtggtgtactccactctccgtaggaataaaataaaatttcattc
tttttctaaatctacgaatcttaatatttgccatctcgatatacattctg
agaaaaaca
gaattctcagactgcttttttcagtaaagcatttgccacattcactgcat
ttgtaaggtttctctcctgtatgaattctctgatgaattctcagactggt
tctatcagtaaagcatttgccacattcactgcatttgtaaggtttctctc
ctgtatgaattctctgatgcatagtaagattgaatttgtttttaaaacat
ttgtcacattcactacatttgtaaattttctcttctgtatgaattccctg
atgaatactaagatggatctgatgggtaaagcatttgtcacttttactac
ttttgtaaggtttctttccatgataaattctctgctgactttgtagtttt
tctctctgggtaagatatttgtgaaattcactacatttgtaagggttccc
tgcaatattgtcttttttcaccatgactttatgtttagaaacaaaaatct
tgtctaattctgcatttcggttgtgttttttcttctgcatgttaattcct
tgattgagactaatggtagaaaacaaacttaaactgtttacagagtcatt
gtatttgcaaacttctttagtgttcctgggcttaagtcttttttgggtcg
agaattgaagagcatcagagctgtgattagttttgtaaggtgtacactgg
agggattcaagaatgacattgctaaacttgtcccatttagaagacttctc
ttgaatattcatgtgttcatggacaatgtactggctgtcttgatccaata
ccttcccattctttccacgtatgcaatgattttctgaaaaaaaagggggg
gcaattagaggtgacatgaattacttatataaggagtaagggactcaata
atcagtgagcttatggattcgtactctcaagaaaggtttctctctctctc
tctctctctctctctctctctctctctgtgaatctttcatgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145419051_145420218
seq2: B6Ng01-073A11.b_38_1196

seq1  GAATTCATACAGGAGAGAAACCTTACAAATGTAGTGAATGTGACAAATGC  50
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAAGGAGAGAAACCTTACAAATGTAGTGAATGTGACAAATGC  50

seq1  TTTACTGAAAAAGGCCATCAGAGAATTCATACAGGAGAGATACCTTACAA  100
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTACTGAAAAAGGCCATCAGAGAATTCATACAGGAGAGATAGCTTACAA  100

seq1  ATAGTTTGTATGTGACAGATACAATACAATGTCAGTCTGAGAAATCATCA  150
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATAGTTTGTATGTGACAAATACAATACAATGTCAGTCTGAGAAATCATCA  150

seq1  GTTTTTAATACAGTAGAGAATATTTATAAATGAAGTGAATGAGACAATCC  200
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTTTTTAATACAGTAGAGAATATTTATAAATGAAGTGAACGAGACAATCC  200

seq1  TTTACCAAGATATATCATCTTAAAAATCATTAGAGAATACTTACAGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCAAGATATATCATCTTAAAAATCATTAGAGAATACTTACAGAAGA  250

seq1  GAAACTTTTCAATTATATCGAAGGTATGAATCCTTTACTCTTGGCCTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTTTCAATTATATCGAAGGTATGAATCCTTTACTCTTGGCCTATT  300

seq1  TCCTAGAATGTTAACAGTGAATACTTACAGGATACAAACTTAACTCATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGAATGTTAACAGTGAATACTTACAGGATACAAACTTAACTCATGC  350

seq1  ATTGTATGAAGAAATATCTTTGACTTCATTTCAGGTCAAAGAGAATATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATGAAGAAATATCTTTGACTTCATTTCAGGTCAAAGAGAATATCT  400

seq1  AATAACTTTTTAGGGGAAAGTATTTCTGTTGGGGAAAGTGTGGCCTGTGT  450
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AATAACTTTTTAGGTGAAAGTATTTCTGTTGGGGAAAGTGTGGCCTGTGT  450

seq1  TTTATTCACGTTCTATTCTTGACAACAATTGAGGCTCCACACTAGAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCACGTTCTATTCTTGACAACAATTGAGGCTCCACACTAGAGAAT  500

seq1  TAGTATGATTATGAAAATCATGTGAAAACTTTCATGCAATGTTCAAATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATGATTATGAAAATCATGTGAAAACTTTCATGCAATGTTCAAATCT  550

seq1  TAAATAATGTCAACTATTTTTTGCTTGAAGAAACTCTGAAAATGTAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATGTCAACTATTTTTTGCTTGAAGAAACTCTGAAAATGTAAAAA  600

seq1  TGTAGAAAGCTTTTCATGACACCTTTTTACTTGTTCACCCTTAAATGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAAGCTTTTCATGACACCTTTTTACTTGTTCACCCTTAAATGTTA  650

seq1  CAAGATGAAGACAAGTTGGGAAGTGAGGAGATATTATTGTGTACCACATT  700
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAAGATGAAGACAAGTTGGGAAGTGAGGAGATATTATTGTGTAACACATT  700

seq1  CATTGAGACAGAAATAATCCATTTCAAAAGGAAACTATTTAAGGTCTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGACAGAAATAATCCATTTCAAAAGGAAACTATTTAAGGTCTTTA  750

seq1  ATGCAGTCCTCAAAATATCTAATAAAACTGGTAACATTCTGTATATTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTCCTCAAAATATCTAATAAAACTGGTAACATTCTGTATATTTAA  800

seq1  TTCAAATGAGCCAATTGAGAAAAATTATACTTAAAAGAATATCTGGCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATGAGCCAATTGAGAAAAATTATACTTAAAAGAATATCTGGCAAA  850

seq1  CTGAGCCACCCAGACAGCATATTCTTTATCCTATAAATATGCTTACAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCACCCAGACAGCATATTCTTTATCCTATAAATATGCTTACAGAT  900

seq1  GTTAAGTGTGCTTCGAGTATTCAGTAATAATAATTCTTCTCAAATGCTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGTGTGCTTCGAGTATTCAGTAATAATAATTCTTCTCAAATGCTTG  950

seq1  GTTCACATTATAGGATAACAACTGATCATTATTTCCCATTT-ATTAAACG  999
      ||||||||||||||||||||||||||||||||||||| ||| ||| ||||
seq2  GTTCACATTATAGGATAACAACTGATCATTATTTCCCCTTTAATTGAACG  1000

seq1  AAAGTCCTATAGGTCTCT-GAAAAATGCT-GACCGTTGATACATA-TTAC  1046
      ||||||||||||| |||| |||||||||| ||||| ||||||||| ||||
seq2  AAAGTCCTATAGG-CTCTGGAAAAATGCTGGACCG-TGATACATATTTAC  1048

seq1  AAGACATTGTGGTGTACTCCACTCTACCGTAAGGAATAAAATAGATTTCC  1096
      | ||||| ||||||||||||||||| |||| |||||||||||| | || |
seq2  AGGACATAGTGGTGTACTCCACTCT-CCGT-AGGAATAAAATAAAATTTC  1096

seq1  ATTCTTTTCTTAAATCATCTACGGAATCTTAATATTTTGCACATCTCAGA  1146
      ||||||||  |||   |||||| ||||||||||| ||||| ||||||   
seq2  ATTCTTTTTCTAA---ATCTAC-GAATCTTAATA-TTTGC-CATCTC--G  1138

seq1  ATATACATTCTGAAGAAAAACA  1168
      |||||||||||| |||||||||
seq2  ATATACATTCTG-AGAAAAACA  1159

seq1: chr4_145488659_145489698
seq2: B6Ng01-073A11.g_68_1010 (reverse)

seq1  TACATGTAATGATTCACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  50
      |||||| || |||||||          |||||||||||||||||||||||
seq2  TACATG-AAAGATTCAC----------AGAGAGAGAGAGAGAGAGAGAGA  39

seq1  GAGAGAGAGAGAGAGAAACCTTTCTTGAGAGTACGAATCCATAAGCTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAAACCTTTCTTGAGAGTACGAATCCATAAGCTCAC  89

seq1  TGATTATTGAGTCCCTTACTCCTTATATAAGTAATTCATGTCACCTCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATTGAGTCCCTTACTCCTTATATAAGTAATTCATGTCACCTCTAA  139

seq1  TTGCCCCCCCCCCTTTTTTTCAGAAAATCATTGCATACGTGGAAAGAATG  200
      |||  ||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTG--CCCCCCCTTTTTTTTCAGAAAATCATTGCATACGTGGAAAGAATG  187

seq1  GGAAGGTATTGGATCAAGACAGCCAGTACATTGTCCATGAACACATGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTATTGGATCAAGACAGCCAGTACATTGTCCATGAACACATGAAT  237

seq1  ATTCAAGAGAAGTCTTCTAAATGGGACAAGCTTAGCAATGTCATTCTTGA  300
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATTCAAGAGAAGTCTTCTAAATGGGACAAGTTTAGCAATGTCATTCTTGA  287

seq1  ATCCCTCCAGTGTACACCTTACAAAACTAATCACAGCTCTGATGCTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTCCAGTGTACACCTTACAAAACTAATCACAGCTCTGATGCTCTTC  337

seq1  AATTCTCGAACCAAAAAAGACTTAAGCCCAGGAACACTAAAGAAGTTTGC  400
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCGACCCAAAAAAGACTTAAGCCCAGGAACACTAAAGAAGTTTGC  387

seq1  AAATACAATGACTCTGTAAACAGTTTAAGTTTGTTTTCTACCATTAGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAATGACTCTGTAAACAGTTTAAGTTTGTTTTCTACCATTAGTCT  437

seq1  CAATCAAGGAATTAACATGCAGAAGAAAAAACACAACCGAAATGCAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAAGGAATTAACATGCAGAAGAAAAAACACAACCGAAATGCAGAAT  487

seq1  TAGAGAAGGTTTTTGTTTCTAAACATAAAGTCATGGTGAAAAAAGACAAT  550
      |||| ||| |||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAAGATTTTTGTTTCTAAACATAAAGTCATGGTGAAAAAAGACAAT  537

seq1  ATTGCAGGGAACCCTTACAAATGTAGTGAATTTCACAAATATCTTACCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGGGAACCCTTACAAATGTAGTGAATTTCACAAATATCTTACCCA  587

seq1  GAGAGAAAAACTACAAAGTCAGCAGAGAATTTATCATGGAAAGAAACCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAAAACTACAAAGTCAGCAGAGAATTTATCATGGAAAGAAACCTT  637

seq1  ACGAAAGTAGTAAAAGTGACAAATGCTTTACCCATCAGATCCATCTTAGT  700
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGTAGTAAAAGTGACAAATGCTTTACCCATCAGATCCATCTTAGT  687

seq1  ATTCATCAGGAAATTCATACAGAAGAGAAAATTTACAAATGTAGTGAATG  750
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCAGGGAATTCATACAGAAGAGAAAATTTACAAATGTAGTGAATG  737

seq1  TGACAAATGTTTTAAAAACAAATTCAATCTTACTATGCATCAGAGAATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAATGTTTTAAAAACAAATTCAATCTTACTATGCATCAGAGAATTC  787

seq1  ATACAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAAATGCTTTACC  850
      |||||||||||||||||||||||||||||||||||| |||||||||||| 
seq2  ATACAGGAGAGAAACCTTACAAATGCAGTGAATGTGGCAAATGCTTTACT  837

seq1  AAACAATCCAATCTTAGTATTCATCAGAGAATTCATACAGGAGAGAAACC  900
       |   | ||| ||| || ||||||||||||||||||||||||||||||||
seq2  GATAGAACCAGTCTGAGAATTCATCAGAGAATTCATACAGGAGAGAAACC  887

seq1  TTACAAATGCAGTGAATGTGACAAATGCTTTACCCAACAATCCTGTCTTA  950
      |||||||||||||||||||| ||||||||||||  || ||  | |||| |
seq2  TTACAAATGCAGTGAATGTGGCAAATGCTTTACTGAAAAAAGCAGTCTGA  937

seq1  GTATTCATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCAGTGAA  1000
      | ||||                                            
seq2  GAATTC--------------------------------------------  943

seq1  TGTGGCAAATGCTTTACTGAAAAAGGCAGTCTGAGAATTC  1040
                                              
seq2  ----------------------------------------  943