BAC Information

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BAC

Clone NameB6Ng01-073D06
Chromosome4 (Build37)
Map Location 144,494,327 - 144,664,434
singlet/doubletdoublet
Overlap geneDhrs3, Vps13d
Upstream geneLOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844
Downstream geneTnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073D06.bB6Ng01-073D06.g
ACCDH890402DH890403
length9601,000
definitionDH890402|Mus musculus domesticus DNA, BAC clone: B6Ng01-073D06, 5' end.DH890403|Mus musculus domesticus DNA, BAC clone: B6Ng01-073D06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,494,327 - 144,495,286)(144,663,435 - 144,664,434)
sequence
gaattctcacttctggaggtgccaacggccagggccagggctatccaatg
agttcctggctgtactcttgatagtcatgcttctcaggcctcagtgccca
tatctaaaacaggtcagaaccagcaagatacccaacagataaagactgtt
gttgcataaccctggtgacctgagtttaatccccagaattcgtgtaaagt
tggaaggaatcaacaaattctacaaagatgtcctctggcctccacacata
tgccacagcatacatgccccaaaacacatacaccatgcatatatacatac
aataatttctttgagagaataagatggaaggctcagtggttaaaaatgct
tgttgctcttgcagaggacccaggttcagttcgtagcacccacatgatgt
ctcacaagtgtctgttgccagttccaggagatcagatgccctcttctagg
ctcttctggcacaggacatgcacatggtatatattctgcacgtgcaccta
tatgcaagcaaatatttcatatataaaacataaaagaaaaataaataaat
ctttaaaaagtattttatgtgtatatgtgctcgtattctttgagccctct
ccctagcacatcgtaggttttgaatggcagatctatgttgcctgccaccc
aggacaggcagaagaaggctcatggcttcccagtagtgttgagtgttgct
gatgttagtgctgttgtaaccagacgaccgcactatgtcctccacttggt
ttccctctttaaggtctctgtgattacgtttttttatggttgcttgagca
gcgagaggccttgtcatcctgtggctggtcctaatggtaatcagtagcat
tatcattgctgacaaaaatggcaacatgatgtcattcatcactcacatgc
tcaccagatacccaattacccagaatgcctgaattccttaccagggtggg
ggaagggggg
gaattcctgcagtgtttatcttgacattgggctggggatgtttgttttgg
ggttgttcctatggcactgaccaatgtgacctgcttaaaggttagtgccc
gagaaaccagttctgtctagttccaagtcccacaagctccttgttttctc
tgagttccagcagccactgagctctttttaaggggagtgtcctgatggag
aactcaagcttagaggtttaggctggaacagggagggagaggagctcttg
ggaactctggcgcagtgggacagtacctggaccccatgggtgggtggttg
ctaggagttggaactagtttttaatgtatgcctcacagggttggtgtgca
ttcttggaagaattaataacggagaagaaaaaaaatagggctttttattt
ttatttcattgagggtcagattcacataacagaaaaccatttcaaactga
acagttagtggtatttactatatttatcactttaccagcttcaccaaaac
attttgttttccctgaaagaacctccactggcacttgttcctcatctcct
tactcccagacctcagcaaccactgacccacttcacttcctgtccctgtg
ggctttgctagctgggtagcccttgcagttaggatcacctccgtgaccgc
cggtgtctggcacctattactgagttactgagtgtaatgttttgggttca
gccacattatgccttgtgactctgctttttttgatgtgcattcggtctgt
gtaggcctgagaaatgctctgggctatgtccttgcccgtatgttggtagg
cgtcgaagctgtttgtacagcttttttgcaggtttttgttctctaatgct
atgggttgtcttttatttttttgaatggtatcattgaaagaacaaaattt
ttccatttcaatgaaatctaacttgttgaatttttgttatgctttgatga
ccaaatgactaatttttaactgaactctcgaacttttacaataataatga

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_144494327_144495286
seq2: B6Ng01-073D06.b_45_1004

seq1  GAATTCTCACTTCTGGAGGTGCCAACGGCCAGGGCCAGGGCTATCCAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACTTCTGGAGGTGCCAACGGCCAGGGCCAGGGCTATCCAATG  50

seq1  AGTTCCTGGCTGTACTCTTGATAGTCATGCTTCTCAGGCCTCAGTGCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTGGCTGTACTCTTGATAGTCATGCTTCTCAGGCCTCAGTGCCCA  100

seq1  TATCTAAAACAGGTCAGAACCAGCAAGATACCCAACAGATAAAGACTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAAAACAGGTCAGAACCAGCAAGATACCCAACAGATAAAGACTGTT  150

seq1  GTTGCATAACCCTGGTGACCTGAGTTTAATCCCCAGAATTCGTGTAAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCATAACCCTGGTGACCTGAGTTTAATCCCCAGAATTCGTGTAAAGT  200

seq1  TGGAAGGAATCAACAAATTCTACAAAGATGTCCTCTGGCCTCCACACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGAATCAACAAATTCTACAAAGATGTCCTCTGGCCTCCACACATA  250

seq1  TGCCACAGCATACATGCCCCAAAACACATACACCATGCATATATACATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACAGCATACATGCCCCAAAACACATACACCATGCATATATACATAC  300

seq1  AATAATTTCTTTGAGAGAATAAGATGGAAGGCTCAGTGGTTAAAAATGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTCTTTGAGAGAATAAGATGGAAGGCTCAGTGGTTAAAAATGCT  350

seq1  TGTTGCTCTTGCAGAGGACCCAGGTTCAGTTCGTAGCACCCACATGATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTCTTGCAGAGGACCCAGGTTCAGTTCGTAGCACCCACATGATGT  400

seq1  CTCACAAGTGTCTGTTGCCAGTTCCAGGAGATCAGATGCCCTCTTCTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAAGTGTCTGTTGCCAGTTCCAGGAGATCAGATGCCCTCTTCTAGG  450

seq1  CTCTTCTGGCACAGGACATGCACATGGTATATATTCTGCACGTGCACCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGGCACAGGACATGCACATGGTATATATTCTGCACGTGCACCTA  500

seq1  TATGCAAGCAAATATTTCATATATAAAACATAAAAGAAAAATAAATAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAAGCAAATATTTCATATATAAAACATAAAAGAAAAATAAATAAAT  550

seq1  CTTTAAAAAGTATTTTATGTGTATATGTGCTCGTATTCTTTGAGCCCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAAAGTATTTTATGTGTATATGTGCTCGTATTCTTTGAGCCCTCT  600

seq1  CCCTAGCACATCGTAGGTTTTGAATGGCAGATCTATGTTGCCTGCCACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGCACATCGTAGGTTTTGAATGGCAGATCTATGTTGCCTGCCACCC  650

seq1  AGGACAGGCAGAAGAAGGCTCATGGCTTCCCAGTAGTGTTGAGTGTTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGGCAGAAGAAGGCTCATGGCTTCCCAGTAGTGTTGAGTGTTGCT  700

seq1  GATGTTAGTGCTGTTGTAACCAGACGACCGCACTATGTCCTCCACTTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTAGTGCTGTTGTAACCAGACGACCGCACTATGTCCTCCACTTGGT  750

seq1  TTCCCTCTTTAAGGTCTCTGTGATTACGTTTTTTTATGGTTGCTTGAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCTTTAAGGTCTCTGTGATTACGTTTTTTTATGGTTGCTTGAGCA  800

seq1  GCGAGAGGCCTTGTCATCCTGTGGCTGGTCCTAATGGTAATCAGTAGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGAGGCCTTGTCATCCTGTGGCTGGTCCTAATGGTAATCAGTAGCAT  850

seq1  TATCATTGCTGACAAAAATGGCAACATGATGTCATTCATCACTCACATGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTGCTGACAAAAATGGCAACATGATGTCATTCATCACTCACATGC  900

seq1  TCACCAGATACCCAATTACCCAGAATGCCTGAATTCCTTACCAGGGTGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGATACCCAATTACCCAGAATGCCTGAATTCCTTACCAGGGTGGG  950

seq1  GGAAGGGGGG  960
      ||||||||||
seq2  GGAAGGGGGG  960

seq1: chr4_144663435_144664434
seq2: B6Ng01-073D06.g_70_1069 (reverse)

seq1  TCATTACTATTGTAAAAAGTACTGATGAGTTCAGTTAAAAATTAGTCATC  50
      |||||| |||||| |||||| | || ||||||||||||||||||||||| 
seq2  TCATTATTATTGT-AAAAGTTC-GA-GAGTTCAGTTAAAAATTAGTCATT  47

seq1  TGGTCATCAAAAGCATAAC-AAAATTCAACAAGTTAGATTTCATTGAAAT  99
      |||||||| |||||||||| ||||||||||||||||||||||||||||||
seq2  TGGTCATC-AAAGCATAACAAAAATTCAACAAGTTAGATTTCATTGAAAT  96

seq1  GGAAAAATTTTGTTCTTTCAATGATACCA-TCAAAAAAATAAAAAGACAA  148
      ||||||||||||||||||||||||||||| |||||||||| |||||||||
seq2  GGAAAAATTTTGTTCTTTCAATGATACCATTCAAAAAAAT-AAAAGACAA  145

seq1  CCCATAGCATTAGAGAAC-AAAACCTGC-AAAAAGCTGTACAAACAGCTT  196
      |||||||||||||||||| ||||||||| |||||||||||||||||||||
seq2  CCCATAGCATTAGAGAACAAAAACCTGCAAAAAAGCTGTACAAACAGCTT  195

seq1  CGACGCCTACCAACATACGGGCAAGGACATAGCCCAGAGCATTTCTCAGG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACGCCTACCAACATACGGGCAAGGACATAGCCCAGAGCATTTCTCAGG  245

seq1  CCTACACAGACCGAATGCACATC-AAAAAAGCAGAGTCACAAGGCATAAT  295
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCTACACAGACCGAATGCACATCAAAAAAAGCAGAGTCACAAGGCATAAT  295

seq1  GTGGCTGAACCCAAAACATTACACTCAGTAACTCAGTAATAGGTGCCAGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGAACCCAAAACATTACACTCAGTAACTCAGTAATAGGTGCCAGA  345

seq1  CACCGGCGGTCACGGAGGTGATCCTAACTGCAAGGGCTACCCAGCTAGCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGGCGGTCACGGAGGTGATCCTAACTGCAAGGGCTACCCAGCTAGCA  395

seq1  AAGCCCACAGGGACAGGAAGTGAAGTGGGTCAGTGGTTGCTGAGGTCTGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCACAGGGACAGGAAGTGAAGTGGGTCAGTGGTTGCTGAGGTCTGG  445

seq1  GAGTAAGGAGATGAGGAACAAGTGCCAGTGGAGGTTCTTTCAGGGAAAAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAGGAGATGAGGAACAAGTGCCAGTGGAGGTTCTTTCAGGGAAAAC  495

seq1  AAAATGTTTTGGTGAAGCTGGTAAAGTGATAAATATAGTAAATACCACTA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTTTGGTGAAGCTGGTAAAGTGATAAATATAGTAAATACCACTA  545

seq1  ACTGTTCAGTTTGAAATGGTTTTCTGTTATGTGAATCTGACCCTCAATGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCAGTTTGAAATGGTTTTCTGTTATGTGAATCTGACCCTCAATGA  595

seq1  AATAAAAATAAAAAGCCCTATTTTTTTTCTTCTCCGTTATTAATTCTTCC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAATAAAAAGCCCTATTTTTTTTCTTCTCCGTTATTAATTCTTCC  645

seq1  AAGAATGCACACCAACCCTGTGAGGCATACATTAAAAACTAGTTCCAACT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGCACACCAACCCTGTGAGGCATACATTAAAAACTAGTTCCAACT  695

seq1  CCTAGCAACCACCCACCCATGGGGTCCAGGTACTGTCCCACTGCGCCAGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCAACCACCCACCCATGGGGTCCAGGTACTGTCCCACTGCGCCAGA  745

seq1  GTTCCCAAGAGCTCCTCTCCCTCCCTGTTCCAGCCTAAACCTCTAAGCTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCAAGAGCTCCTCTCCCTCCCTGTTCCAGCCTAAACCTCTAAGCTT  795

seq1  GAGTTCTCCATCAGGACACTCCCCTTAAAAAGAGCTCAGTGGCTGCTGGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTCCATCAGGACACTCCCCTTAAAAAGAGCTCAGTGGCTGCTGGA  845

seq1  ACTCAGAGAAAACAAGGAGCTTGTGGGACTTGGAACTAGACAGAACTGGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAGAAAACAAGGAGCTTGTGGGACTTGGAACTAGACAGAACTGGT  895

seq1  TTCTCGGGCACTAACCTTTAAGCAGGTCACATTGGTCAGTGCCATAGGAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCGGGCACTAACCTTTAAGCAGGTCACATTGGTCAGTGCCATAGGAA  945

seq1  CAACCCCAAAACAAACATCCCCAGCCCAATGTCAAGATAAACACTGCAGG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCAAAACAAACATCCCCAGCCCAATGTCAAGATAAACACTGCAGG  995

seq1  AATTC  1000
      |||||
seq2  AATTC  1000