BAC Information

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BAC

Clone NameB6Ng01-073E22
Chromosome4 (Build37)
Map Location 146,444,791 - 146,739,906
singlet/doubletdoublet
Overlap geneLOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581
Upstream geneLOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034
Downstream geneEG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073E22.bB6Ng01-073E22.g
ACCDH890478DH890479
length1,1531,181
definitionDH890478|Mus musculus domesticus DNA, BAC clone: B6Ng01-073E22, 5' end.DH890479|Mus musculus domesticus DNA, BAC clone: B6Ng01-073E22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,444,791 - 146,445,953)(146,738,672 - 146,739,906)
sequence
gaattccaggacagccagggctacacagagaaccccagtcttgaaaaaca
aaaacaaaaacaaaaaacaaaaacaaaacaacaacaacaacaaacaaatc
aaaaccaaaaaaaaaaaaaaaaagcagccaggagatggcagtacatacct
ttaatcccaaaattcgggagtcagaggcaaccagaccttttgagtttgag
gacaacctggtatatgcagcaaatctcagaacagccaaggctacacagag
aaaccctgttttgaagaaataaatcaataataacaacaataataatttaa
aaaataaagtggtttatcttgccacttctctgttataagatcctagcaat
tgtaaagagctaaacaactagctataagaacagtatgaagactaactaat
gcccaagacgtttacagttagcctaatactgccacagtgaattagagatc
agcctgaaaagggacagtctcaggcagcataagaacctgaggctcctggg
actctgagagccagccatgtctgtgcagctgaaaacacagggaaaccaga
agactgaaatggtagtttcagttctcttgttctaggttctttagactgta
aatgaaaagaaaactcagttcagaattaatccactggatagagatttcta
gactatattgtagaattatagaacttaagagaaaaaaccaaaacagtatg
gtaatatgaataggaatggaccgcataaggctcaaatatttgaatgcttg
gtcattagggagtgccactacttaaagagattaggggtattgccttgctg
gaggaagtgtgtcactaggggtggacattagggtttcagaagcccaagcc
aggcccagtgactctctattttccgatgcttgtggacctgaatatagaac
tctcatttttcctgtaccacgatgtctttgcacaggctaccatgcttcct
agccatgatgacaattgaactaaacctctaaactgtaagccagccacaat
aaatgctttcctttaagaattgttatgatagtgtgtttctttcacagcaa
taaaaccactgactagacacttagatgattaaaattattagaaacggcat
tggctcccctaaatatttttccctccctccttcttttcctcttcccaaat
ttc
gaattccggaggaaaggctaactggggtaactattaacatatcaatgaag
acagggattgggatggtgctttcttggctcctgtttaactcttggcttga
cctctattctccttctcatcttcaattcccttccccccatctaatgaact
ggttcagtctggacccaaagagataactctgaatgctttctccctcatgc
tgaaataccaaaaattaaccccaccacaagcccaagaaccaggtatcttc
ttgcagctctgcaggttgcatgtcttaggaaaataataaggcctcacaga
aaatgacaagggcatataaaaccagctgtaggaagtgaccaaagtctatc
tcttggtcaagatgtaatattttaaaaagctttccaacattgtagaattt
ttttttctctgacgacattaagggttaacagaacctactatatatcttct
ccttagttgttcattgctgcaaacctgttttcatgcttcaatgaaaccta
aggtgtaacattaataactaagactatgaagacacatctctggatgctgt
atttacatcaatgactacatataactcagtgtgaaactaacggagactat
aactttgttaggttaatgtgaatatatacagccatatgatggtgctttat
aacgtaaattttctaatttcaatcaaatcttcaccaattccccatatgac
aaatatctacaaggctctctcaggatgcctactcagttcccttggagaaa
gggaaatgaaatggcaaatgaaggaacaggggagttaagaaagcaggacg
aatttgaattacagttgctttataaaggcttttgcaagacaaacctcccg
gtatacaaactccagatgcagccaaggatctacaagatactttagaataa
tattctggcaaccataaaattgattaaaacatcatcattgaaccaaaatc
acaagatctcaaacttcctgacaatgggtaagatattcaataacagatgt
gggagtagcgacagaaaatgcaccccttgcctcacgtgcttgtcttgctc
ttgccatttctaattacaacactcctctgacttgaaaggcaacagaacag
ctgctcggattgtcttagaagcaggcaggaaattttcaggtttcgcaaat
actatgcattatctctccccagaacttcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146444791_146445953
seq2: B6Ng01-073E22.b_42_1194

seq1  GAATTCCAGGACAGCCAGGGCTACACAGAGAACCCCAGTCTTGAAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTACACAGAGAACCCCAGTCTTGAAAAACA  50

seq1  AAAACAAAAACAAAAAACAAAAACAAAACAACAACAACAAC---CAAACC  97
      |||||||||||||||||||||||||||||||||||||||||   |||| |
seq2  AAAACAAAAACAAAAAACAAAAACAAAACAACAACAACAACAAACAAATC  100

seq1  AAAACCAAAAAAAAAAAAAAAAAAGCAGCCAGGAGATGGCAGCACATACC  147
      |||||| ||||||||||||||||||||||||||||||||||| |||||||
seq2  AAAACC-AAAAAAAAAAAAAAAAAGCAGCCAGGAGATGGCAGTACATACC  149

seq1  TTTAATCCCAAAATTCGGGAGTCAGAGGCAAGCAGACCTTTTGAGTTTGA  197
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTTAATCCCAAAATTCGGGAGTCAGAGGCAACCAGACCTTTTGAGTTTGA  199

seq1  GGACAACCTGGTATATGCAGCAAATCTCAGAACAGCCAAGGCTACACAGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAACCTGGTATATGCAGCAAATCTCAGAACAGCCAAGGCTACACAGA  249

seq1  GAAACCCTGTTTTGAAGAAATAAATCAATAACAACAACAATAATAATTTC  297
      ||||||||||||||||||||||||||||||| ||||||||||||||||| 
seq2  GAAACCCTGTTTTGAAGAAATAAATCAATAATAACAACAATAATAATTTA  299

seq1  AAAAAGAAAGTGGTTTATCTTGCCACTTCTCTGTTATAAGATCCTAGCAA  347
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAAGTGGTTTATCTTGCCACTTCTCTGTTATAAGATCCTAGCAA  349

seq1  TTGTAAAGAGCTAAACAACTAGCTATAAGAACAGTATGAAGACTAACTAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAGAGCTAAACAACTAGCTATAAGAACAGTATGAAGACTAACTAA  399

seq1  TGCCCAAGACGTTTACAGTTAGCCTAATACTGCCACAGTGAATTAGAGAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAAGACGTTTACAGTTAGCCTAATACTGCCACAGTGAATTAGAGAT  449

seq1  CAGCCTGAAAAGGGACAGTCTCAGGCAGCATAAGAACCTGAGGCTCCTGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGAAAAGGGACAGTCTCAGGCAGCATAAGAACCTGAGGCTCCTGG  499

seq1  GACTCTGAGAGCCAGCCATGTCTGTGCAGCTGAAAACACAGGGAAACCAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGAGAGCCAGCCATGTCTGTGCAGCTGAAAACACAGGGAAACCAG  549

seq1  AAGACTGAAATGGTAGGCAGAGTTCAGTTCTCTTGTTCTAGGTTCTTTAG  597
      ||||||||||||||||      ||||||||||||||||||||||||||||
seq2  AAGACTGAAATGGTAG-----TTTCAGTTCTCTTGTTCTAGGTTCTTTAG  594

seq1  ACTGTAAATGAAAAGAAAATTCAGTTCAGAATTAATCCACTGGATAGAGA  647
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACTGTAAATGAAAAGAAAACTCAGTTCAGAATTAATCCACTGGATAGAGA  644

seq1  TTTCTAGACTATATTGTAGAATTATAGAACTTAAGAGAAAAAAACAAAAC  697
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTCTAGACTATATTGTAGAATTATAGAACTTAAGAGAAAAAACCAAAAC  694

seq1  AGTATGGTAATTTGAATAGGAATGGCCCCCATAAGGCTCAAATATTTGAA  747
      ||||||||||| ||||||||||||| || |||||||||||||||||||||
seq2  AGTATGGTAATATGAATAGGAATGGACCGCATAAGGCTCAAATATTTGAA  744

seq1  TGCTTGGTCATTAGGGAGTGCCACTACTTAAAGAGATTAGGAGGTATGGC  797
      ||||||||||||||||||||||||||||||||||||||||| ||||| ||
seq2  TGCTTGGTCATTAGGGAGTGCCACTACTTAAAGAGATTAGG-GGTATTGC  793

seq1  CTTGCTGGAGGAAGTGTGTCACTAGGGGTGGACATTAGGGTTTCAGAAGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGGAGGAAGTGTGTCACTAGGGGTGGACATTAGGGTTTCAGAAGC  843

seq1  CCAAGCCAGGCCCAGTGACTCTAT-TTTCCCGATGCTTGTGGACCTGAAT  896
      |||||||||||||||||||||| | ||| |||||||||||||||||||||
seq2  CCAAGCCAGGCCCAGTGACTCTCTATTTTCCGATGCTTGTGGACCTGAAT  893

seq1  ATAGAACTCTCATTTTTCCTGTACCACAATGTCTTTGCACAGGCTACCAT  946
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATAGAACTCTCATTTTTCCTGTACCACGATGTCTTTGCACAGGCTACCAT  943

seq1  GCTTCCTAGCCATGATGACAA-TGAACTAAACCTCTAAAACTATAAGCCA  995
      ||||||||||||||||||||| |||||||||||||| ||||| |||||||
seq2  GCTTCCTAGCCATGATGACAATTGAACTAAACCTCT-AAACTGTAAGCCA  992

seq1  GCCACAATTAAATGCTTTCCTTTTTAAGAATTGTTATGATAGTGGTGTTT  1045
      ||||||| ||||||||||||  ||||||||||||||||||||| ||||||
seq2  GCCACAA-TAAATGCTTTCC--TTTAAGAATTGTTATGATAGT-GTGTTT  1038

seq1  C-TTCACAGCAATAGAA-CACTGGCTAAGACACTTAGGAAGATTAAAATT  1093
      | |||||||||||| || ||||| || ||||||||| || ||||||||||
seq2  CTTTCACAGCAATAAAACCACTGACT-AGACACTTA-GATGATTAAAATT  1086

seq1  A-TAGAAACGTCATTGGGTCTCCCTAATTATTTTTTCCTCCCTCCTTTCT  1142
      | |||||||| |||||| || |||||| ||||||| ||||||||| ||||
seq2  ATTAGAAACGGCATTGGCTC-CCCTAAATATTTTTCCCTCCCTCC-TTCT  1134

seq1  TTTTCTCTCTTCCCAACTTTC  1163
      |||   |||||||||| ||||
seq2  TTT--CCTCTTCCCAAATTTC  1153

seq1: chr4_146738672_146739906
seq2: B6Ng01-073E22.g_67_1247 (reverse)

seq1  CAGGAAGTTCTGCCTTTTCAGCATTCTCCTTGTACCTTGGCTGCCTTGTG  50
                                                        
seq2  --------------------------------------------------  0

seq1  GTCAGGATGTCCTGGAGGAAGACTAGTGCCTAGTATTTGCAGAACCTGAA  100
        ||||| || |||| |  ||| || ||| ||||||||||  ||||||||
seq2  --CAGGAAGTTCTGGGGAGAGA-TAATGCATAGTATTTGCGAAACCTGAA  47

seq1  AATTTCCTTGCTGGCCTCCTAGGACATTC--AGCAGCTGGTCCTGTTGCC  148
      ||||||||  |||  || ||| |||| ||  ||||||| || ||||||||
seq2  AATTTCCTGCCTG--CTTCTAAGACAATCCGAGCAGCT-GTTCTGTTGCC  94

seq1  TTCCAGGTCAGAGGAGCTGTTGTACTAGGAAATGGGCAGGAGCAGGGCAG  198
      || || |||||||||| ||||||| |  ||||| |||| ||||| | || 
seq2  TTTCAAGTCAGAGGAG-TGTTGTAATTAGAAAT-GGCAAGAGCAAGACAA  142

seq1  GCACGTGGAGC-AGGGGTGCATTTTCTGTCGCTACTCTCACAATCTGTT-  246
      |||||||  || ||||||||||||||||||||||||| ||| ||||||| 
seq2  GCACGTGAGGCAAGGGGTGCATTTTCTGTCGCTACTCCCAC-ATCTGTTA  191

seq1  GTGGATATCTTA-CCATTGTCAGGAAGTTTGAGATCCTGTGATTTTGGTT  295
       || |||||||| ||||||||||||||||||||||| |||||||||||||
seq2  TTGAATATCTTACCCATTGTCAGGAAGTTTGAGATCTTGTGATTTTGGTT  241

seq1  C-ATGATGATGTTTTAATCAATTTTATGGTTGCCAGAATATTTTTCTAAA  344
      | |||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAATGATGATGTTTTAATCAATTTTATGGTTGCCAGAATATTATTCTAAA  291

seq1  GTATCCTTGTAGATCCTTGGCTGCATCTGGAGTTTGTATACCGGGAGGTT  394
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAT-CTTGTAGATCCTTGGCTGCATCTGGAGTTTGTATACCGGGAGGTT  340

seq1  TGTCTTTGCAAAAGCCTTTATAAAGCAACTGTAATTCAAATTCGTTCCTG  444
      |||| ||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGTC-TTGCAAAAGCCTTTATAAAGCAACTGTAATTCAAATTCG-TCCTG  388

seq1  CTTTCTTAACTCCCCTGTTCCTTCATTTGCCATTTCATTTCCCTTTCTCC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTAACTCCCCTGTTCCTTCATTTGCCATTTCATTTCCCTTTCTCC  438

seq1  -AGGGAACTGAGTAGGCATCCTGAGAGAGCCTTGTAGATATTTGTCATAT  543
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAACTGAGTAGGCATCCTGAGAGAGCCTTGTAGATATTTGTCATAT  488

seq1  GGGGAATTGGTGAAGATTTGATTG-AATTAGAAAATTTACGTTATAAAGC  592
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGGGAATTGGTGAAGATTTGATTGAAATTAGAAAATTTACGTTATAAAGC  538

seq1  ACCATCATATGGCTGTATATATTCACATTAACCTAACAAAGTTATAGTCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCATATGGCTGTATATATTCACATTAACCTAACAAAGTTATAGTCT  588

seq1  CCGTTAGTTTCACACTGAGTTATATGTAGTCATTGATGTAAATACAGCAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTAGTTTCACACTGAGTTATATGTAGTCATTGATGTAAATACAGCAT  638

seq1  CCAGAGATGTGTCTTCATAGTCTTAGTTATTAATGTTACACCTTAGGTTT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGATGTGTCTTCATAGTCTTAGTTATTAATGTTACACCTTAGGTTT  688

seq1  CATTGAAGCATGAAAACAGGTTTGCAGCAATGAACAACTAAGGAGAAGAT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAAGCATGAAAACAGGTTTGCAGCAATGAACAACTAAGGAGAAGAT  738

seq1  ATATAGTAGGTTCTGTTAACCCTTAATGTCGTCAGAGAAAAAAAAATTCT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTAGGTTCTGTTAACCCTTAATGTCGTCAGAGAAAAAAAAATTCT  788

seq1  ACAATGTTGGAAAGCTTTTTAAAATATTACATCTTGACCAAGAGATAGAC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTTGGAAAGCTTTTTAAAATATTACATCTTGACCAAGAGATAGAC  838

seq1  TTTGGTCACTTCCTACAGCTGGTTTTATATGCCCTTGTCATTTTCTGTGA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCACTTCCTACAGCTGGTTTTATATGCCCTTGTCATTTTCTGTGA  888

seq1  GGCCTTATTATTTTCCTAAGACATGCAACCTGCAGAGCTGCAAGAAGATA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTATTATTTTCCTAAGACATGCAACCTGCAGAGCTGCAAGAAGATA  938

seq1  CCTGGTTCTTGGGCTTGTGGTGGGGTTAATTTTTGGTATTTCAGCATGAG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTCTTGGGCTTGTGGTGGGGTTAATTTTTGGTATTTCAGCATGAG  988

seq1  GGAGAAAGCATTCAGAGTTATCTCTTTGGGTCCAGACTGAACCAGTTCAT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAGCATTCAGAGTTATCTCTTTGGGTCCAGACTGAACCAGTTCAT  1038

seq1  TAGATGGGGGGAAGGGAATTGAAGATGAGAAGGAGAATAGAGGTCAAGCC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGGGGGGAAGGGAATTGAAGATGAGAAGGAGAATAGAGGTCAAGCC  1088

seq1  AAGAGTTAACCAGGAGCCAAGAAAGCACCATCCCAATCCCTGTCTTCATT  1192
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTAAACAGGAGCCAAGAAAGCACCATCCCAATCCCTGTCTTCATT  1138

seq1  GATATGTTAATAGTTACCCCAGTTAGCCTTTCCTCCTGAATTC  1235
      |||||||||||||||||||||||||||||||||||| ||||||
seq2  GATATGTTAATAGTTACCCCAGTTAGCCTTTCCTCCGGAATTC  1181