BAC Information

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BAC

Clone NameB6Ng01-073K16
Chromosome10 (Build37)4 (Build37)
Map Location 73,803,655 - 73,804,30468,097,787 - 68,098,854
singlet/doubletsingletsinglet
Overlap genePcdh15
Upstream geneLOC432471, LOC100039981, LOC623191
Downstream geneEG630453, EG623346, Gnaz, LOC100040057, Rab36, Bcr, Specc1l, LOC100040670, Adora2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073K16.bB6Ng01-073K16.g
ACCDH890724DH890725
length2521,064
definitionDH890724|Mus musculus domesticus DNA, BAC clone: B6Ng01-073K16, 5' end.DH890725|Mus musculus domesticus DNA, BAC clone: B6Ng01-073K16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(73,803,655 - 73,804,304)(68,097,787 - 68,098,854)
sequence
gaattctttccatcatctcgaatcaaaatttgatagttttgatctcctgc
atatcttgtaaaggtaatcataggtactgtgaggtaatgagtgtattcat
catatggttgcagaactcaagccctctaccctatcctctgactcttgtat
tcttccttccacttttcccacaatatctcctgggtttgtgctcaggagat
tgataaaatggtgcatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gt
gaattcctccttctttgaatacaaaataacaactaaacataaataaatga
aagaaactgagacctattcaatctctgctacatcactcttgtcagaatca
atttgttttaattccatcagagtgcagagctatggtgaatatgagtgttt
aaatcaatcctacttttatatttgttctaagttttccagcttgtgggatc
aagatgattacttaacctctctgagtgtcacttttcattgtaacattggt
ctagcaataccaagcctttccagagaggaaggctagaaatttatagtgct
cataaaagaaatctcaaatacatattgcactttttcttgcaacacatctc
ctaaaaacattcatgctctgcatccaagatggacagtcccttcagtctct
gctccacagtttttctccatatttgctctcatgaatattgtgtagaattg
acactttggtcttccttcttgagctttatttggtctgtgaatagtatctt
gggtattctgagtttctgggctaatatccatttatcagtaagtgcatacc
atgtgtgttcttttgttattgggttacctcactcaggatgatattttcta
attccatccacttgcctaataatttccagaattcattgtttttaatagct
gtgtggtattccattatataaatatactacattttctgtatccattcctc
tgttaagggacatctgggttctttacagcttctggctattataaataagg
cttctatgaacacagggcagcatgtgtccttattacatgttggagcatct
ctgggtatatgcccaggagttgtaatgttggttcctctggtagtactatg
tccaattttctgaggaaccaccaaactggtttccagagtgattgtaccac
cttgcaatcccaccagcagtggtggagtgttcatttatcttatttagttg
ttatttaattcaaagaagtagatattcctccagaaactctgtctaatagt
tcctgatataccaaagtgaatattgctgacttaaatgaggactacattct
aagaaaaatagcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_73803655_73804304
seq2: B6Ng01-073K16.b_191_292 (reverse)

seq1  ACACACACACATACACTAAACACACTAAATACAGTTATAAAAGAAATAGA  50
                                                        
seq2  --------------------------------------------------  0

seq1  AAACCAACTCCTAAAAGTTACCCTCAAACCTATACATACTACAAACATAC  100
                                                  ||| ||
seq2  --------------------------------------------ACACAC  6

seq1  ACACACACACACACACACACACATACATACATACATACATACACTACACA  150
      ||||||||||||||||||||||| ||| | || ||  |||    | ||  
seq2  ACACACACACACACACACACACACACACATATGCA-CCATTTTAT-CAAT  54

seq1  CACACAA--ACAAACACACTAAACACACAGTTATAA----AAGAAATAGA  194
      | |   |  |||||| ||  | | |    |  | ||    ||| || |  
seq2  CTCCTGAGCACAAACCCAGGAGATATTGTGGGAAAAGTGGAAGGAAGA--  102

seq1  AAACCAACTCCTAAAAGTTACCCTCTAAACTATACATGCTACACACACAC  244
                                                        
seq2  --------------------------------------------------  102

seq1  ACACTAAACACACAGTTATAAAAGAAATAGAAAACTAACTCCTAAAAGTT  294
                                                        
seq2  --------------------------------------------------  102

seq1  ACCCTCTAATCTATACATACTACACACATACACAACCACATATACACACT  344
                                                        
seq2  --------------------------------------------------  102

seq1  ACACACATACCACAAACACACAGAGTTATAAAATAGAATCAGAACTAGAG  394
                                                        
seq2  --------------------------------------------------  102

seq1  CATGTCACATGCCGCCTCAGTCATGGATGGGTATATGAAGAATTGATTGG  444
                                                        
seq2  --------------------------------------------------  102

seq1  TATTTTCCTGGCGATATTAAATGAGAACCATTTGTTAACATTGCCTCTCC  494
                                                        
seq2  --------------------------------------------------  102

seq1  CTGAGTCCTGCATTTGAAGTTTCAAGTTCAATCTACAGCATTCACATCTT  544
                                                        
seq2  --------------------------------------------------  102

seq1  CTCAAACAATATCACCTAATTCCACCAAAGGACTCTAAACACTGAGGATC  594
                                                        
seq2  --------------------------------------------------  102

seq1  TGGGACTTCAGAGCAATAGATATTAACAAAACACAAGGAAAAGTGGCCAA  644
                                                        
seq2  --------------------------------------------------  102

seq1  GGAAGA  650
            
seq2  ------  102

seq1: chr4_68097787_68098854
seq2: B6Ng01-073K16.g_70_1133 (reverse)

seq1  ATGCTATTTCTCTCTAG-ATGTAGTCCTCATTTAAGTCAGCAATAATCAC  49
      ||||||||| ||| ||| ||||||||||||||||||||||||||| ||||
seq2  ATGCTATTTTTCT-TAGAATGTAGTCCTCATTTAAGTCAGCAATATTCAC  49

seq1  TTTTGGTATATCAGGAACTA-TAGACAGAGTTTTCTGGAGGAATATCTAC  98
       ||||||||||||||||||| ||||||||| |||||||||||||||||||
seq2  -TTTGGTATATCAGGAACTATTAGACAGAG-TTTCTGGAGGAATATCTAC  97

seq1  TTCTTTGAATATAAAATAACAACTAAATAAAATAAATGGAACACTCCACC  148
      ||||||||  || ||||||||||||||||| |||||| ||||||||||||
seq2  TTCTTTGA--ATTAAATAACAACTAAATAAGATAAAT-GAACACTCCACC  144

seq1  ACTGCTGGTGGGATTGCAAGGTGGTACAATCACTCTGGAAACCAGTTTGG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGGTGGGATTGCAAGGTGGTACAATCACTCTGGAAACCAGTTTGG  194

seq1  TGGTTCCTCAGAAAATTGGACATAGTACTACCAGAGGAACCAACATTACA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCCTCAGAAAATTGGACATAGTACTACCAGAGGAACCAACATTACA  244

seq1  ACTCCTGGGCATATACCCAGAGATGCTCCAACATGTAATAAGGACACATG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGGGCATATACCCAGAGATGCTCCAACATGTAATAAGGACACATG  294

seq1  CTGCCCTGTGTTCATAGAAGCCTTATTTATAATAGCCAGAAGCTGTAAAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTGTGTTCATAGAAGCCTTATTTATAATAGCCAGAAGCTGTAAAG  344

seq1  AACCCAGATGTCCCTTAACAGAGGAATGGATACAGAAAATGTAGTATATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGATGTCCCTTAACAGAGGAATGGATACAGAAAATGTAGTATATT  394

seq1  TATATAATGGAATACCACACAGCTATTAAAAACAATGAATTCTGGAAATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAATGGAATACCACACAGCTATTAAAAACAATGAATTCTGGAAATT  444

seq1  ATTAGGCAAGTGGATGGAATTAGAAAATATCATCCTGAGTGAGGTAACCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGCAAGTGGATGGAATTAGAAAATATCATCCTGAGTGAGGTAACCC  494

seq1  AATAACAAAAGAACACACATGGTATGCACTTACTGATAAATGGATATTAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAAAAGAACACACATGGTATGCACTTACTGATAAATGGATATTAG  544

seq1  CCCAGAAACTCAGAATACCCAAGATACTATTCACAGACCAAATAAAGCTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAACTCAGAATACCCAAGATACTATTCACAGACCAAATAAAGCTC  594

seq1  AAGAAGGAAGACCAAAGTGTCAATTCTACACAATATTCATGAGAGCAAAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGAAGACCAAAGTGTCAATTCTACACAATATTCATGAGAGCAAAT  644

seq1  ATGGAGAAAAACTGTGGAGCAGAGACTGAAGGGACTGTCCATCTTGGATG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAAAAACTGTGGAGCAGAGACTGAAGGGACTGTCCATCTTGGATG  694

seq1  CAGAGCATGAATGTTTTTAGGAGATGTGTTGCAAGAAAAAGTGCAATATG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCATGAATGTTTTTAGGAGATGTGTTGCAAGAAAAAGTGCAATATG  744

seq1  TATTTGAGATTTCTTTTATGAGCACTATAAATTTCTAGCCTTCCTCTCTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAGATTTCTTTTATGAGCACTATAAATTTCTAGCCTTCCTCTCTG  794

seq1  GAAAGGCTTGGTATTGCTAGACCAATGTTACAATGAAAAGTGACACTCAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCTTGGTATTGCTAGACCAATGTTACAATGAAAAGTGACACTCAG  844

seq1  AGAGGTTAAGTAATCATCTTGATCCCACAAGCTGGAAAACTTAGAACAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTAAGTAATCATCTTGATCCCACAAGCTGGAAAACTTAGAACAAA  894

seq1  TATAAAAGTAGGATTGATTTAAACACTCATATTCACCATAGCTCTGCACT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAGTAGGATTGATTTAAACACTCATATTCACCATAGCTCTGCACT  944

seq1  CTGATGGAATTAAAACAAATTGATTCTGACAAGAGTGATGTAGCAGAGAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGAATTAAAACAAATTGATTCTGACAAGAGTGATGTAGCAGAGAT  994

seq1  TGAATAGGTCTCAGTTTCTTTCATTTATTTATGTTTAGTTGTTATTTTGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGGTCTCAGTTTCTTTCATTTATTTATGTTTAGTTGTTATTTTGT  1044

seq1  ATTCAAAGAAGGAGGAATTC  1068
      ||||||||||||||||||||
seq2  ATTCAAAGAAGGAGGAATTC  1064