BAC Information

Click to search

BAC

Clone NameB6Ng01-074E04
Chromosome4 (Build37)
Map Location 130,964,880 - 131,090,821
singlet/doubletdoublet
Overlap geneGm831, EG664832
Upstream geneFabp3, Zcchc17, Wdr57, 2610200G18Rik, Pum1, LOC622577, Sdc3, Laptm5, Matn1, LOC622681, LOC100041575
Downstream geneLOC100039799, Ptpru, Mecr, Sfrs4, EG664865, EG623230, Epb4.1, LOC666480, LOC100039835, Oprd1, LOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074E04.bB6Ng01-074E04.g
ACCDH891157DH891158
length1,093783
definitionDH891157|Mus musculus domesticus DNA, BAC clone: B6Ng01-074E04, 5' end.DH891158|Mus musculus domesticus DNA, BAC clone: B6Ng01-074E04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,089,725 - 131,090,821)(130,964,880 - 130,965,659)
sequence
gaattcattgtcttctagaaatgtccaggaaacaaaacatccctttaaat
agatctgcaggccttgggcaacctttcaaacaacttaggacaactgagga
tggctaaagataaacctgccaagcttttttgagtcctctgtgctacatcc
atttgctaatttactgaaactaccacagacaaggccagggtttgggggaa
acattcactcggcctttcatccatccaccatccatcatccatccatctat
ccatcatccatccatccatccatccatccatccatcatgcatccaccaat
tatcaatctatccatcatccatccatccatcatctatccatcattcatca
tccatctatcattcaacatccatccatcagccatccaacatccatccatc
catccatccatccatccatccatccatctatccatccatccttctatcca
tcgtccgtccatccatcattcatcatccatccatccatccatctgtcatc
catccatccatccatcattcatcatccacccatcgtcaatccatccatca
tccattatccatccatccatctatccatccatccatctatccatccatcc
atccatccatcatccatccatccatcatccatccatctatccatccatca
tccatctatccattatccattcatccatccatctttagtccctgctctgt
cacaatcactatttgggggccactagaagcacaattttaaaaagacacac
acaaaaaaaactatccccaagaagctcacactctggaggcagaggcaaga
agtgagcagtttgtcaatgaatagacagacagattgcagtgagagctgtg
aaggtagcagaagatacatgctggaactcagtggtgatgacagggggagg
gagagagagagagagagagagagagatagagagagagagagagagagaga
gacctccaagatgtaactctggagcttatgttgaatatggaaagattcca
gtcatgtgggagattggggcagaagaggatgggaagcaaaaaactctggc
aagaggggcagtgcatactaaaggctggagtaacaatggctat
gaattccaggtgctgctggaaatagccttataaggaaggggcaaggaaaa
ctaacctgcctagcaggtatgttacctctctggggaggcaagggtacagg
cccaagtttgccagggtgggaggagggaggggaacagtcctcctcctgca
gatctcaaaacaagatctctaaggtctgggcacacctcaagctaactctt
gctccaggcctgctcctccctgtcctaatcccacgcctccctggccccac
agcctgggcctcagagggccacaaaactagactgttcaagcctcaagacc
aggtaaggagaacatctagatttagttcaagtaccataggaagccaatca
agtgtccgatgtggctataaggtaccccctggtggtcatgaaggcactga
agcaggacctggccataaggcagcagcataagaaggggtgagagccaggc
agtggtggcaagtgcttttaagcccagcactcgggaggcagagacaggca
gatttctgagtttgaggccagcctggtctacagagtgagttccaggacag
ccagggatatacagagaaaccttgtctcaagaagaagaagaagaagaaga
agaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaag
aagaagaagaagaagaaggaggaggagaaggggtgagcatggcagacact
agtttgatgtttgggggcgggaaatcagtctgaggaacattttggatgtt
gacaatgggttgctggtgggatctgggggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_131089725_131090821
seq2: B6Ng01-074E04.b_43_1135 (reverse)

seq1  ATAGCCATTGTTTACCTCCAGCCTTTAGTATGCACTGCCCCCTCTGCCCA  50
      ||||||||||||   |||||||||||||||||||||| |||||||  |||
seq2  ATAGCCATTGTT--ACTCCAGCCTTTAGTATGCACTG-CCCCTCTTGCCA  47

seq1  GAGTTTTCTGCCTCCCATCCTCTTCTGCCCCAATCT-CCACATGACTGGA  99
      ||||||| ||| |||||||||||||||||||||||| |||||||||||||
seq2  GAGTTTTTTGCTTCCCATCCTCTTCTGCCCCAATCTCCCACATGACTGGA  97

seq1  ATCTTTCCATTATTCAACATAAGCTCCAGAGTTACATCTTTGGAGGTTCT  149
      ||||||||| |||||||||||||||||||||||||||| ||||||| |||
seq2  ATCTTTCCA-TATTCAACATAAGCTCCAGAGTTACATC-TTGGAGG-TCT  144

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCC  199
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTATCTCTCTCTCTCTCTCTCTCTCTCTCC  194

seq1  CTCCCCCCTGTCATTCACCCACTGAGTTCCAGCATGTATCTTCTGCTACC  249
      || |||||||||| ||| ||||||||||||||||||||||||||||||||
seq2  CT-CCCCCTGTCA-TCA-CCACTGAGTTCCAGCATGTATCTTCTGCTACC  241

seq1  TTCACAGCTCTCACTGCAATCTGTCTGTCTATTCATTGACAAACTGCTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGCTCTCACTGCAATCTGTCTGTCTATTCATTGACAAACTGCTCA  291

seq1  CTTCTTGCCTCTGCCTCCAGAGTGTGAGCTTCTTGGGGATAGTTTTTTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGCCTCTGCCTCCAGAGTGTGAGCTTCTTGGGGATAGTTTTTTTT  341

seq1  GTGTGTGTCTTTTTAAAATTGTGCTTCTAGTGGCCCCCAAATAGTGATTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTCTTTTTAAAATTGTGCTTCTAGTGGCCCCCAAATAGTGATTG  391

seq1  TGACAGAGCAGGGACTAAAGATGGATGGATGAATGGATAATGGATAGATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAGCAGGGACTAAAGATGGATGGATGAATGGATAATGGATAGATG  441

seq1  GATGATGGATGGATAGATGGATGGATGATGGATGGATGGAT----GATGG  495
      |||||||||||||||||||||||||||||||||||||||||    |||||
seq2  GATGATGGATGGATAGATGGATGGATGATGGATGGATGGATGATGGATGG  491

seq1  ATGGATGGATGGATAGATGGATGGATGGATAGATGGATGGATGGATAATG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGGATGGATAGATGGATGGATGGATAGATGGATGGATGGATAATG  541

seq1  GATGATGGATGGATTGACGATGGGTGGATGATGAATGATGGATGGATGGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGGATGGATTGACGATGGGTGGATGATGAATGATGGATGGATGGA  591

seq1  TGGATGACAGATGGATGGATGGATGGATGATGAATGATGGATGGACGGAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGACAGATGGATGGATGGATGGATGATGAATGATGGATGGACGGAC  641

seq1  GATGGATAGAAGGATGGATGGATAGATGGATGGATGGATGGATGGATGGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATAGAAGGATGGATGGATAGATGGATGGATGGATGGATGGATGGA  691

seq1  TGGATGGATGGATGTTGGATGGCTGATGGATGGATGTTGAATGATAGATG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGATGGATGTTGGATGGCTGATGGATGGATGTTGAATGATAGATG  741

seq1  GATGATGAATGATGGATAGATGATGGATGGATGGATGATGGATAGATTGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGAATGATGGATAGATGATGGATGGATGGATGATGGATAGATTGA  791

seq1  TAATTGGTGGATGCATGATGGATGGATGGATGGATGGATGGATGGATGAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGGTGGATGCATGATGGATGGATGGATGGATGGATGGATGGATGAT  841

seq1  GGATAGATGGATGGATGATGGATGGTGGATGGATGAAAGGCCGAGTGAAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGATGGATGGATGATGGATGGTGGATGGATGAAAGGCCGAGTGAAT  891

seq1  GTTTCCCCCAAACCCTGGCCTTGTCTGTGGTAGTTTCAGTAAATTAGCAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCCCAAACCCTGGCCTTGTCTGTGGTAGTTTCAGTAAATTAGCAA  941

seq1  ATGGATGTAGCACAGAGGACTCAAAAAAGCTTGGCAGGTTTATCTTTAGC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGTAGCACAGAGGACTCAAAAAAGCTTGGCAGGTTTATCTTTAGC  991

seq1  CATCCTCAGTTGTCCTAAGTTGTTTGAAAGGTTGCCCAAGGCCTGCAGAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCAGTTGTCCTAAGTTGTTTGAAAGGTTGCCCAAGGCCTGCAGAT  1041

seq1  CTATTTAAAGGGATGTTTTGTTTCCTGGACATTTCTAGAAGACAATGAAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTAAAGGGATGTTTTGTTTCCTGGACATTTCTAGAAGACAATGAAT  1091

seq1  TC  1097
      ||
seq2  TC  1093

seq1: chr4_130964880_130965659
seq2: B6Ng01-074E04.g_65_847

seq1  GAATTCCAGGTGCTGCTGGAAATAGCCTTATAAGGAAGGGGCAAGGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTGCTGCTGGAAATAGCCTTATAAGGAAGGGGCAAGGAAAA  50

seq1  CTAACCTGCCTAGCAGGTATGTTACCTCTCTGGGGAGGCAAGGGTACAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCTGCCTAGCAGGTATGTTACCTCTCTGGGGAGGCAAGGGTACAGG  100

seq1  CCCAAGTTTGCCAGGGTGGGAGGAGGGAGGGGAACAGTCCTCCTCCTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTTTGCCAGGGTGGGAGGAGGGAGGGGAACAGTCCTCCTCCTGCA  150

seq1  GATCTCAAAACAAGATCTCTAAGGTCTGGGCACACCTCAAGCTAACTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCAAAACAAGATCTCTAAGGTCTGGGCACACCTCAAGCTAACTCTT  200

seq1  GCTCCAGGCCTGCTCCTCCCTGTCCTAATCCCACGCCTCCCTGGCCCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGGCCTGCTCCTCCCTGTCCTAATCCCACGCCTCCCTGGCCCCAC  250

seq1  AGCCTGGGCCTCAGAGGGCCACAAAACTAGACTGTTCAAGCCTCAAGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGGCCTCAGAGGGCCACAAAACTAGACTGTTCAAGCCTCAAGACC  300

seq1  AGGTAAGGAGAACATCTAGATTTAGTTCAAGTACCATAGGAAGCCAATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGGAGAACATCTAGATTTAGTTCAAGTACCATAGGAAGCCAATCA  350

seq1  AGTGTCCGATGTGGCTATAAGGTACCCCCTGGTGGTCATGAAGGCACTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCCGATGTGGCTATAAGGTACCCCCTGGTGGTCATGAAGGCACTGA  400

seq1  AGCAGGACCTGGCCATAAGGCAGCAGCATAAGAAGGGGTGAGAGCCAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGACCTGGCCATAAGGCAGCAGCATAAGAAGGGGTGAGAGCCAGGC  450

seq1  AGTGGTGGCAAGTGCTTTTAAGCCCAGCACTCGGGAGGCAGAGACAGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGGCAAGTGCTTTTAAGCCCAGCACTCGGGAGGCAGAGACAGGCA  500

seq1  GATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAG  550

seq1  CCAGGGATATACAGAGAAACCTTGTCTC---AAGAAGAAGAAGAAGAAGA  597
      ||||||||||||||||||||||||||||   |||||||||||||||||||
seq2  CCAGGGATATACAGAGAAACCTTGTCTCAAGAAGAAGAAGAAGAAGAAGA  600

seq1  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG  650

seq1  AAGAAGAAGAAGAAGAAGGAGGAGGAGAAGGGGTGAGCATGGCAGACACT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGAAGAAGAAGGAGGAGGAGAAGGGGTGAGCATGGCAGACACT  700

seq1  AGTTTGATGTTTGGGGGCGGGAAATCAGTCTGAGGAACATTTTGGATGTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGATGTTTGGGGGCGGGAAATCAGTCTGAGGAACATTTTGGATGTT  750

seq1  GACAATGGGTTGCTGGTGGGATCTGGGGGAGGG  780
      |||||||||||||||||||||||||||||||||
seq2  GACAATGGGTTGCTGGTGGGATCTGGGGGAGGG  783