BAC Information

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BAC

Clone NameB6Ng01-074H20
Chromosome4 (Build37)12 (Build37)
Map Location 134,111,947 - 134,111,99447,292,313 - 47,293,330
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneNr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1
Downstream geneMan1c1, Ldlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3, Clic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074H20.bB6Ng01-074H20.g
ACCDH891325DH891326
length7701,022
definitionDH891325|Mus musculus domesticus DNA, BAC clone: B6Ng01-074H20, 5' end.DH891326|Mus musculus domesticus DNA, BAC clone: B6Ng01-074H20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(134,111,947 - 134,111,994)(47,292,313 - 47,293,330)
sequence
gaattctaagcagaggaatctcaaatggcctagaagcacttagagaaatg
ctcaacatccttaagttatcagggaaaagcaaatcaaaatgacctcaagg
ttctacttcacaccaatcagaatggccaagaccaaaaactcaagtgacag
cacatcctgttgaggatgtggagaaagaggaacaacctttaattgctggt
gggattgcaaactggtacaactactctagaaatcaatctggtgatactcc
tagaacattggaaatagttctacctgaagacccagctatcctgttcctca
catatatctaaaagatgttccaccatactgtaaagacacctgctccacta
tgttcatagcagccttgttcctaataaccagaaactggaagcaacccaga
tgtccctcggctgaaaaatggatacagaaaatgtggttcatttatgcaag
ggaatactattcagctattaaatatgaggacatcatgaattttcagacaa
atggatggaactagaaaatatcattctcagtggggtaacccagactcaaa
aggacaggcatagtatgcactcattgataaatggatattagacaaaaagt
atagaatacccatgataaacctcacagactctaagaagttaaacaagaag
gaaggacaaaataatcattggaggtagagggtaggagggacctgggtggg
aggggaaatggggaaatacctggtgtgtgtgtgggtgtctgtgtgtttgt
gtgtgtgtctgtgtgtctgt
gaattctttgctgaatattgagaagttactaatggaaaaataatttaaat
gtttgggtattttctgccaaaaagatatatagatcttttactagagctat
ttaaatttcacaacaaaatattgatatgaaaagaaaagaaaagtgtggac
ttgccactgtctcatattctatcttagttgaaccccacccaccttgaaag
tcagacatgatagaagccatttttgaagatacttcaagtttcaaggtagg
catattcggcagatttctcttttcagccttagaaggagaaatgtattgga
aattttattttgcttttgccctaaagacgtaattacagccctgtgaccag
tacagattccttggattgcctcacattagacacaagaagtaaaatacctg
agtgttgcaatctgtaccagattgagaattaaaaaatatatatcctagca
atgattcctctaaaaaaatagctataaaatttctggaaaacagtgaattt
agtgactctttgtttactttgaaaatgggggaagttgtagattatttcta
aaatcattcttagacttactacaatggagtctgtggatcagaagaaagcc
tggctatttgtatttgtctcccagtctcttctgatgtattactttttgct
ggggactaggacactcattagttttgttttcaaaatactcattatattca
ctttaggacaactcagaactagagttgggggggcagatattggcatagta
cttagacaaagcaggctgattcttcatgttccaccacaaacaacatccat
tgattgtcctcattcctcacagaaaaatcactggaacaaaccaaagagct
gtatgactttctaggttacttgtcttcttccgttaggatttgaaagaagc
aagtgaataaggcatacagtgtttgctgaaggaacttgtaatgcagaggt
ataagtgatgtgtttgtaaaaagataaagaggtgtggtataagaatattt
ttcttttggggggtggttggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_134111947_134111994
seq2: B6Ng01-074H20.b_767_814 (reverse)

seq1  ACAGACACACAGACACACACACACACACACACACACACACACACACAC  48
      ||||||||||||||||||||||| ||||||| |||| |||||||||||
seq2  ACAGACACACAGACACACACACAAACACACAGACACCCACACACACAC  48

seq1: chr12_47292313_47293330
seq2: B6Ng01-074H20.g_66_1087 (reverse)

seq1  CACCA--CACCCCC--ATAG-AAAATATTCTTATACCACACCTCTTTATC  45
      |||||  |||||||  | || |||||||||||||||||||||||||||||
seq2  CACCAACCACCCCCCAAAAGAAAAATATTCTTATACCACACCTCTTTATC  50

seq1  TTTTTACAAACACATCACTTATACCTCTGCATTACAAGTTCCTTCAGCAA  95
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACAAACACATCACTTATACCTCTGCATTACAAGTTCCTTCAGCAA  100

seq1  ACACCTGTATGCCTTATTCACTTGCTTCTTTCAAATCCTAACGGAAGAAG  145
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACA-CTGTATGCCTTATTCACTTGCTTCTTTCAAATCCTAACGGAAGAAG  149

seq1  ACAAGTAACCTAGAAAGTCATACAGCTCTTTGGTTTGTTCCAGTGATTTT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTAACCTAGAAAGTCATACAGCTCTTTGGTTTGTTCCAGTGATTTT  199

seq1  TCTGTGAGGAATGAGGACAATCAATGGATGTTGTTTGTGGTGGAACATGA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAGGAATGAGGACAATCAATGGATGTTGTTTGTGGTGGAACATGA  249

seq1  AGAATCAGCCTGCTTTGTCTAAGTACTATGCCAATATCTGCCCCCCCAAC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCAGCCTGCTTTGTCTAAGTACTATGCCAATATCTGCCCCCCCAAC  299

seq1  TCTAGTTCTGAGTTGTCCTAAAGTGAATATAATGAGTATTTTGAAAACAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTTCTGAGTTGTCCTAAAGTGAATATAATGAGTATTTTGAAAACAA  349

seq1  AACTAATGAGTGTCCTAGTCCCCAGCAAAAAGTAATACATCAGAAGAGAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATGAGTGTCCTAGTCCCCAGCAAAAAGTAATACATCAGAAGAGAC  399

seq1  TGGGAGACAAATACAAATAGCCAGGCTTTCTTCTGATCCACAGACTCCAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGACAAATACAAATAGCCAGGCTTTCTTCTGATCCACAGACTCCAT  449

seq1  TGTAGTAAGTCTAAGAATGATTTTAGAAATAATCTACAACTTCCCCCATT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTAAGTCTAAGAATGATTTTAGAAATAATCTACAACTTCCCCCATT  499

seq1  TTCAAAGTAAACAAAGAGTCACTAAATTCACTGTTTTCCAGAAATTTTAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGTAAACAAAGAGTCACTAAATTCACTGTTTTCCAGAAATTTTAT  549

seq1  AGCTATTTTTTTAGAGGAATCATTGCTAGGATATATATTTTTTAATTCTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTTTTTTAGAGGAATCATTGCTAGGATATATATTTTTTAATTCTC  599

seq1  AATCTGGTACAGATTGCAACACTCAGGTATTTTACTTCTTGTGTCTAATG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGGTACAGATTGCAACACTCAGGTATTTTACTTCTTGTGTCTAATG  649

seq1  TGAGGCAATCCAAGGAATCTGTACTGGTCACAGGGCTGTAATTACGTCTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCAATCCAAGGAATCTGTACTGGTCACAGGGCTGTAATTACGTCTT  699

seq1  TAGGGCAAAAGCAAAATAAAATTTCCAATACATTTCTCCTTCTAAGGCTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCAAAAGCAAAATAAAATTTCCAATACATTTCTCCTTCTAAGGCTG  749

seq1  AAAAGAGAAATCTGCCGAATATGCCTACCTTGAAACTTGAAGTATCTTCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGAAATCTGCCGAATATGCCTACCTTGAAACTTGAAGTATCTTCA  799

seq1  AAAATGGCTTCTATCATGTCTGACTTTCAAGGTGGGTGGGGTTCAACTAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGCTTCTATCATGTCTGACTTTCAAGGTGGGTGGGGTTCAACTAA  849

seq1  GATAGAATATGAGACAGTGGCAAGTCCACACTTTTCTTTTCTTTTCATAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAATATGAGACAGTGGCAAGTCCACACTTTTCTTTTCTTTTCATAT  899

seq1  CAATATTTTGTTGTGAAATTTAAATAGCTCTAGTAAAAGATCTATATATC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTTTGTTGTGAAATTTAAATAGCTCTAGTAAAAGATCTATATATC  949

seq1  TTTTTGGCAGAAAATACCCAAACATTTAAATTATTTTTCCATTAGTAACT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGCAGAAAATACCCAAACATTTAAATTATTTTTCCATTAGTAACT  999

seq1  TCTCAATATTCAGCAAAGAATTC  1018
      |||||||||||||||||||||||
seq2  TCTCAATATTCAGCAAAGAATTC  1022