BAC Information

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BAC

Clone NameB6Ng01-074N01
Chromosome4 (Build37)
Map Location 146,433,701 - 146,544,288
singlet/doubletdoublet
Overlap geneLOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657
Upstream geneLOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498
Downstream geneLOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074N01.bB6Ng01-074N01.g
ACCDH891558DH891559
length1,1751,135
definitionDH891558|Mus musculus domesticus DNA, BAC clone: B6Ng01-074N01, 5' end.DH891559|Mus musculus domesticus DNA, BAC clone: B6Ng01-074N01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,433,701 - 146,434,743)(146,543,132 - 146,544,288)
sequence
gaattcatcagagaattcatacaggagagaaaccttacaaatgtagtgaa
tgtgacaaagctttactgagaaagtcaatctgagaaggcatcagagaact
catacaggggagaattcttacaaatgtattgaatgtgacaaatgttttgc
ccagaaatcctatcttgtttttaatcacagaaatcatacattaaagaagc
cttacaaatgcagtcaatgtgacaaatgattttcccacaaacttagtctg
agaatgcatcagagaattcatacagtagagaaaacttacaaaaatgcagt
gaatgtgataaatgctttactaataaaggcagactgagaattaatcagat
aatttatacatttaaaaaaacccttacaagtattttgtatgtgataaatg
cagtacccacaacatcagtctgacaaatcaacagatatttcaaacagtag
agcaacattataaatgaaatgaatgagatagtcctttaacaagaaatatc
atcttaaaattcactggagaattcttccaaaagggaaacttttcaaatac
attgacggtttgaatcctttattttggcctatctcttagaatgtaataga
taatttatacaggcaagaatcttaacaaatataatatatgctgaaatatc
tttgacttcatttcagtgcagaaaaaatatgtaaaaaaaatttttatggg
aaaaatagttctcctggggaaatgtggcatatgttttacacgggtaatat
tcttttcaacagtcagtgctctaaactagagaattattatgaatctgaaa
acttttgaaaaccttcatgcaatgttcaaatcttagataatgtcaactat
tatgctggcagtaactctgaatatatgatagtgaagaaacattttcatta
aacttttacttgttcaccctcaaatattatatgatgaagtcagtgtgaaa
gccagaagaatatgatgttgtgcaacaattcatggagatagaaatgatcc
attccaaaggaaactaataaagtgtactatcgccttcaaatgtctaataa
aactggcagcatttttgtatatttatcaatgagaaatgacaccagatgta
gtgatagtgtatttgaacaactgagccaccaagaactgcatgttcttatc
tattaatatgcctacagatgtgaag
gaattcattgtcctggcaaataggtactcttaaaatggcaaatggaggaa
tacaggtgttaagaaagaatggatgaatttgaattcgaagagctctttaa
ggctttaccaaagagaatctccatgtacaaactacagatactgcatagga
tctacaatgttttagaagaatgttctggaatccataaaattcattaaaac
attacaatgaaccccagttcacagtgttatgcccagatattgaaaccaca
aagaccaccaggactcaactctgaagcatttcacaccagtgtatattcca
gcttggtatgcaaaccttccctgatgcagcacgttaggtgactgaccagg
aattttatttcttcaggggaaagaaggcagaaaaaaatatgtagtagtgc
tagtaactcccagcagctgcagctggctggacatgtctaaccttgagacc
cgatttttttttttgtataaacttacatctactggcttccattttgatac
ctcaataggatctcaaacttcttgacaattgtaagatattcacaacagaa
tagtgagagtggctgcagaaaatcacccctgctccacacccctgctttac
ttctgccagttcctcttacatgtcaggttccaggacagacttatcacagg
tgactctcccacaatgcccacacagcaactgtaccctaaagaagttttcg
agtttccctaatacttggctctagcccacccccaccccccaagacttcct
gaccacgaggacatccagaatatgcagagaatgcatgagtggtggtattt
cctgttactatggcctagttccttgggacaactccttctggttccacaca
atatacagcagtttcctgctacatgtttctttaaaaccctccgacttaga
cccttttaatgaattagcttcccagtacctctcagctgtgttgtttgttt
gtttgtttgtttgtttgtttggtgtagttttcctggctgctactcatgct
gtttgtcgttccgaaatgcatctaatcaggcagtaagccctcctccccta
gataccactccaccaactcttgttgcaagatgctccaacaactgcagcgg
tcagaatgcaaggcctacactaaccagcttcccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146433701_146434743
seq2: B6Ng01-074N01.b_183_1216

seq1  ATGTTTTGCCCAGAAATCCTATCTTGTTTTTAATCACAGAAATCATACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTGCCCAGAAATCCTATCTTGTTTTTAATCACAGAAATCATACAT  50

seq1  TAAAGAAGCCTTACAAATGCAGTCAATGTGACAAATGATTTTCCCACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAGCCTTACAAATGCAGTCAATGTGACAAATGATTTTCCCACAAA  100

seq1  CTTAGTCTGAGAATGCATCAGAGAATTCATACAGTAGAGAAAACTTACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTCTGAGAATGCATCAGAGAATTCATACAGTAGAGAAAACTTACAA  150

seq1  AAATGCAGTGAATGTGATAAATGCTTTACTAATAAAGGCAGACTGAGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAGTGAATGTGATAAATGCTTTACTAATAAAGGCAGACTGAGAAT  200

seq1  TAATCAGATAATTTATACATTTAAAAAAACCCTTACAAGTATTTTGTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGATAATTTATACATTTAAAAAAACCCTTACAAGTATTTTGTATG  250

seq1  TGATAAATGCAGTACCCACAACATCAGTCTGACAAATCAACAGATATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAATGCAGTACCCACAACATCAGTCTGACAAATCAACAGATATTTC  300

seq1  AAACAGTAGAGCAACATTATAAATGAAATGAATGAGATAGTCCTTTAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTAGAGCAACATTATAAATGAAATGAATGAGATAGTCCTTTAACA  350

seq1  AGAAATATCATCTTAAAATTCACTGGAGAATTCTTCCAAAAGGGAAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATCATCTTAAAATTCACTGGAGAATTCTTCCAAAAGGGAAACTT  400

seq1  TTCAAATACATTGACGGTTTGAATCCTTTATTTTGGCCTATCTCTTAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATACATTGACGGTTTGAATCCTTTATTTTGGCCTATCTCTTAGAA  450

seq1  TGTAATAGATAATTTATACAGGCAAGAATCTTAACAAATATAATATATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATAGATAATTTATACAGGCAAGAATCTTAACAAATATAATATATGC  500

seq1  TGAAATATCTTTGACTTCATTTCAGTGCAGAAAAAATATGTAAAAAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATATCTTTGACTTCATTTCAGTGCAGAAAAAATATGTAAAAAAAAT  550

seq1  TTTTATGGGAAAAATAGTTCTCCTGGGGAAATGTGGCATATGTTTTACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGGGAAAAATAGTTCTCCTGGGGAAATGTGGCATATGTTTTACAC  600

seq1  GGGTAATATTCTTTTCAACAGTCAGTGCTCTAAACTAGAGAATTATTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAATATTCTTTTCAACAGTCAGTGCTCTAAACTAGAGAATTATTATG  650

seq1  AATCTGAAAACTTTTGAAAACCTTCATGCAATGTTCAAATCTTAGATAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGAAAACTTTTGAAAACCTTCATGCAATGTTCAAATCTTAGATAAT  700

seq1  GTCAACTATTATGCTGGCAGTAACTCTGAATATATGATAGTGAAGAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACTATTATGCTGGCAGTAACTCTGAATATATGATAGTGAAGAAACA  750

seq1  TTTTCATTAAACTTTTACTTGTTCACCCTCAAATATTATATGATGAAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTAAACTTTTACTTGTTCACCCTCAAATATTATATGATGAAGTC  800

seq1  AGGTGTGAAAGCCAGAAGAATATGATGTTGTGCAACAATTCATGGAGATA  850
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-GTGTGAAAGCCAGAAGAATATGATGTTGTGCAACAATTCATGGAGATA  849

seq1  GAAATGATCCATTCCAAAAGGAAACTAAATAAAGTGTACTATCGCCTTCA  900
      ||||||||||||||| |||||||||| |||||||||||||||||||||| 
seq2  GAAATGATCCATTCC-AAAGGAAACT-AATAAAGTGTACTATCGCCTTC-  896

seq1  AAATGTCTAATAAAACTGGCAGCA-TTTTGTATATTTAATTCAAATGAAG  949
      |||||||||||||||||||||||| |||||||||||||  || |||| ||
seq2  AAATGTCTAATAAAACTGGCAGCATTTTTGTATATTTA--TC-AATG-AG  942

seq1  AAATTGACA-CAGATTGTAGTTGATAGTGTATTTGACAAACTGAGCCACC  998
      ||| ||||| |||| ||||| |||||||||||||||  ||||||||||||
seq2  AAA-TGACACCAGA-TGTAG-TGATAGTGTATTTGAACAACTGAGCCACC  989

seq1  AAG-ACTGCATGTTCTTAATCCTATAATATGCCTACAGATGTGAAG  1043
      ||| ||||||||||||| |||   ||||||||||||||||||||||
seq2  AAGAACTGCATGTTCTT-ATCTATTAATATGCCTACAGATGTGAAG  1034

seq1: chr4_146543132_146544288
seq2: B6Ng01-074N01.g_66_1200 (reverse)

seq1  TGGGGAAGCTGTGTAGTGTAGGCCCTGGGCATCCTGACAGCTGCAGTTGT  50
      |||||||||||  ||||||||||| |  |||| ||||| |||||||||||
seq2  TGGGGAAGCTGGTTAGTGTAGGCCTT--GCATTCTGACCGCTGCAGTTGT  48

seq1  GTGGAAGGCACCCTGCAAC-AGAGTTGGTGGAGTGGTATCTGAGGGGAGG  99
       ||||  ||| | |||||| ||||||||||||||||||||| |||||| |
seq2  -TGGA--GCATCTTGCAACAAGAGTTGGTGGAGTGGTATCT-AGGGGA-G  93

seq1  GAGGGCCTACTTGCCTGATTAGATGCATTTCGGAAAACGACAAAAACAAG  149
      |||||| ||| ||||||||||||||||||||||  |||||||||    ||
seq2  GAGGGCTTAC-TGCCTGATTAGATGCATTTCGG--AACGACAAA---CAG  137

seq1  CAATGAAGTAAGCAAGCCAGGAAAACCAACCAACCAAACAAACAAACAAA  199
      | ||| ||| ||| |||||||||||| |    ||||||||||||||||||
seq2  C-ATG-AGT-AGC-AGCCAGGAAAACTA---CACCAAACAAACAAACAAA  180

seq1  CAAACAAACAAACAAACACAGCTGAGAGGTACTGGGAAGCTAATTCATTA  249
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAAC-AACACAGCTGAGAGGTACTGGGAAGCTAATTCATTA  229

seq1  AAAGGGTCCTAAGTCGGAGGGTTTTAAAGAAACATGTAGCAGGAAACTGC  299
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGT-CTAAGTCGGAGGGTTTTAAAGAAACATGTAGCAGGAAACTGC  278

seq1  TGTATATTGTGTGGAACCAGAAGGAGTTGTCCCAAGGAACTAGGCCATAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATTGTGTGGAACCAGAAGGAGTTGTCCCAAGGAACTAGGCCATAG  328

seq1  TAACAGGAAATACCACCACTCCTGCATTCTCTGCATATTCTGGATGTCCT  399
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TAACAGGAAATACCACCACTCATGCATTCTCTGCATATTCTGGATGTCCT  378

seq1  CGTGGTCAGGAAGTCTTGGGGGGTGGGGGTGGGGCTAGAGCCAAGTATTA  449
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CGTGGTCAGGAAGTCTTGGGGGGTGGGGGT-GGGCTAGAGCCAAGTATTA  427

seq1  GGGAAACTCGAAAACTTCTTTAGGGTACAGTTGCTGTGTGGGCATTGTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAACTCGAAAACTTCTTTAGGGTACAGTTGCTGTGTGGGCATTGTGG  477

seq1  GAGAGTCACCTGTGATAAGTCTGTCCTGGAACCTGACATGTAAGAGGAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTCACCTGTGATAAGTCTGTCCTGGAACCTGACATGTAAGAGGAAC  527

seq1  TGGCAGAAGTAAAGCAGGGGTGTGGAGCAGGGGTGATTTTCTGCAGCCAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGAAGTAAAGCAGGGGTGTGGAGCAGGGGTGATTTTCTGCAGCCAC  577

seq1  TCTCACTATTCTGTTGTGAATATCTTACAATTGTCAAGAAGTTTGAGATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTATTCTGTTGTGAATATCTTACAATTGTCAAGAAGTTTGAGATC  627

seq1  CTATTGAGGTATCAAAATGGAAGCCAGTAGATGTAAGTTTATACAAAAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGAGGTATCAAAATGGAAGCCAGTAGATGTAAGTTTATACAAAAAA  677

seq1  AAAAATCGGGTCTCAAGGTTAGACATGTCCAGCCAGCTGCAGCTGCTGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCGGGTCTCAAGGTTAGACATGTCCAGCCAGCTGCAGCTGCTGGG  727

seq1  AGTTACTAGCACTACTACATATTTTTTTCTGCCTTCTTTCCCCTGAAGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTAGCACTACTACATATTTTTTTCTGCCTTCTTTCCCCTGAAGAA  777

seq1  ATAAAATTCCTGGTCAGTCACCTAACGTGCTGCATCAGGGAAGGTTTGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTCCTGGTCAGTCACCTAACGTGCTGCATCAGGGAAGGTTTGCA  827

seq1  TACCAAGCTGGAATATACACTGGTGTGAAATGCTTCAGAGTTGAGTCCTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAGCTGGAATATACACTGGTGTGAAATGCTTCAGAGTTGAGTCCTG  877

seq1  GTGGTCTTTGTGGTTTCAATATCTGGGCATAACACTGTGAACTGGGGTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCTTTGTGGTTTCAATATCTGGGCATAACACTGTGAACTGGGGTTC  927

seq1  ATTGTAATGTTTTAATGAATTTTATGGATTCCAGAACATTCTTCTAAAAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAATGTTTTAATGAATTTTATGGATTCCAGAACATTCTTCTAAAAC  977

seq1  ATTGTAGATCCTATGCAGTATCTGTAGTTTGTACATGGAGATTCTCTTTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAGATCCTATGCAGTATCTGTAGTTTGTACATGGAGATTCTCTTTG  1027

seq1  GTAAAGCCTTAAAGAGCTCTTCGAATTCAAATTCATCCATTCTTTCTTAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGCCTTAAAGAGCTCTTCGAATTCAAATTCATCCATTCTTTCTTAA  1077

seq1  CACCTGTATTCCTCCATTTGCCATTTTAAGAGTACCTATTTGCCAGGACA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTATTCCTCCATTTGCCATTTTAAGAGTACCTATTTGCCAGGACA  1127

seq1  ATGAATTC  1157
      ||||||||
seq2  ATGAATTC  1135