BAC Information

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BAC

Clone NameB6Ng01-074N18
Chromosome4 (Build37)
Map Location 145,418,967 - 145,420,157
singlet/doubletsinglet
Overlap gene1700029I01Rik
Upstream geneLOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704
Downstream geneLOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074N18.bB6Ng01-074N18.g
ACCDH891592DH891593
length1,2371,197
definitionDH891592|Mus musculus domesticus DNA, BAC clone: B6Ng01-074N18, 5' end.DH891593|Mus musculus domesticus DNA, BAC clone: B6Ng01-074N18, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctatgatgaactctcagatagcctttgtcagtaaagcatttgtcg
cattcactacatttgtaaggtttctctcctgcatgaattctatgatgaac
tctaagactgcttttgtcagtaaagcatttgtcacactcactgcattggt
acggtttctctcctgtatgaattctctgatgaactctcagactgcctttg
tcagtaaagcatttgtcgcattcactacatttgtaaggtttctctcctga
atgaattctacgatgaatactaagatgggatggttgggtaaagcatttgt
cacactcactgcatttgtacggtttctctcctatatgaattctctgatga
actctcagactgcctttgtcagtaaagcatttgtcgcattcactacattt
gtaaggtttctctcctgaatgaattctacgatgaatactaagatgggatg
gttgggtaaagcatttgtcacactcactgcatttgtaaggtttctctcct
gtatgaattctctgatgaactctcagactgcctttgtcagtaaagcattt
gtcacattcattacatttgtaaggtttctctcctatatgaattctctgat
gctttctcagagtgaatttgtcagtaaagcatttgtcgcattcactacat
ttgtaaggtttctctcctgtatgaattctctgatgctttctcagagtgaa
tttgtcagtaaagcatttgtcgcattcactacatttgtaaggtttctctc
ctgaatgaattctacgatgaatactaagatgggatggttgggtaaagcat
ttgtcacactcactgcatttgtaaggtttctctcctgtatgaattctctg
atgaactctcagactgcctttgtcagtaaagcatttgtcacattcattac
atttgtaaaggtttctctcctgtatgaattctctgatgctttctcagagt
gcatttgtcagtaaagcatttgtcgcattccactacatttgtaaggtttc
tctcctgaatgaattgtatgatgaatactaagaatgggaaggtttggtaa
aagcatttgtcaactttcacctatattttggtaaagatttcttttcctgg
ataaatttcctgctgaccttggaaggatttcactctcgaagtaaagcatt
tgtccaattcacccacagcttaaggtccatcacattggttgtgctcacat
gggtatagtttagagaaccaaaaaccccctatctaga
gaattcatacaggagagaaaccttacaaatgcactgaatgtgacaaatcc
tttactgaaaagggcaaactgagaattcatcagagaattcatacaggaga
gaaaccttacaaatgtagtgaatgtgacaaatgctttactgaaaaaggcc
atcagagaattcatacaggagagataccttacaaatagtttgtatgtgac
agatacaatacaatgtcagtctgagaaatcatcagtttttaatacagtag
agaatatttataaatgaagtgaatgagacaatcctttaccaagatatatc
atcttaaaaatcattagagaatacttacagaagagaaacttttcaattat
atcgaaggtatgaatcctttactcttggcctatttcctagaatgttaaca
gtgaatacttacaggatacaaacttaactcatgcattgtatgaagaaata
tctttgacttcatttcaggtcaaagagaatatctaataactttttagggg
aaagtatttctgttggggaaagtgtggcctgtgttttattcacgttctat
tcttgacaacaattgaggctccacactagagaattagtatgattatgaaa
atcatgtgaaaactttcatgcaatgttcaaatcttaaataatgtcaacta
ttttttgcttgaagaaactctgaaaatgtaaaaatgtagaaagcttttca
tgacacctttttacttgttcacccttaaatgttacaagatgaagacaagt
tgggaagtgaggagatattattgtgtaccacattcattgagacagaaata
atccatttcaaaaggaaactatttaaggtctttaatgcagtcctcaaata
tctaataaaactggtaacatttctgtatatttaattcaaatgagccaatt
gagaaaaattatacttaaaagaatatctggcaaactgagccacccagaca
gcatattctttatcctataaatatgcttacagatgtaagtgtgcttcgag
tattcagtaatataattcttcttcaaatgcttgggttcacattataggat
acaactgatcaattatttcccaatttattaaacgaaagtcctataggtct
ctggaaaaaatgctgaccggttgatacatattacaagaacattgggggtt
acctccactctcacgtaagaataaaatagatgccatatccttttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145418967_145420157
seq2: B6Ng01-074N18.g_69_1265

seq1  GAATTCATACAGGAGAGAAACCTTACAAATGCACTGAATGTGACAAATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACAGGAGAGAAACCTTACAAATGCACTGAATGTGACAAATCC  50

seq1  TTTACTGAAAAGGGCAAACTGAGAATTCATCAGAGAATTCATACAGGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGAAAAGGGCAAACTGAGAATTCATCAGAGAATTCATACAGGAGA  100

seq1  GAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTACTGAAAAAGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTACTGAAAAAGGCC  150

seq1  ATCAGAGAATTCATACAGGAGAGATACCTTACAAATAGTTTGTATGTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGAATTCATACAGGAGAGATACCTTACAAATAGTTTGTATGTGAC  200

seq1  AGATACAATACAATGTCAGTCTGAGAAATCATCAGTTTTTAATACAGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACAATACAATGTCAGTCTGAGAAATCATCAGTTTTTAATACAGTAG  250

seq1  AGAATATTTATAAATGAAGTGAATGAGACAATCCTTTACCAAGATATATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATTTATAAATGAAGTGAATGAGACAATCCTTTACCAAGATATATC  300

seq1  ATCTTAAAAATCATTAGAGAATACTTACAGAAGAGAAACTTTTCAATTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAAAAATCATTAGAGAATACTTACAGAAGAGAAACTTTTCAATTAT  350

seq1  ATCGAAGGTATGAATCCTTTACTCTTGGCCTATTTCCTAGAATGTTAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGAAGGTATGAATCCTTTACTCTTGGCCTATTTCCTAGAATGTTAACA  400

seq1  GTGAATACTTACAGGATACAAACTTAACTCATGCATTGTATGAAGAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATACTTACAGGATACAAACTTAACTCATGCATTGTATGAAGAAATA  450

seq1  TCTTTGACTTCATTTCAGGTCAAAGAGAATATCTAATAACTTTTTAGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGACTTCATTTCAGGTCAAAGAGAATATCTAATAACTTTTTAGGGG  500

seq1  AAAGTATTTCTGTTGGGGAAAGTGTGGCCTGTGTTTTATTCACGTTCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATTTCTGTTGGGGAAAGTGTGGCCTGTGTTTTATTCACGTTCTAT  550

seq1  TCTTGACAACAATTGAGGCTCCACACTAGAGAATTAGTATGATTATGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGACAACAATTGAGGCTCCACACTAGAGAATTAGTATGATTATGAAA  600

seq1  ATCATGTGAAAACTTTCATGCAATGTTCAAATCTTAAATAATGTCAACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTGAAAACTTTCATGCAATGTTCAAATCTTAAATAATGTCAACTA  650

seq1  TTTTTTGCTTGAAGAAACTCTGAAAATGTAAAAATGTAGAAAGCTTTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGCTTGAAGAAACTCTGAAAATGTAAAAATGTAGAAAGCTTTTCA  700

seq1  TGACACCTTTTTACTTGTTCACCCTTAAATGTTACAAGATGAAGACAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACCTTTTTACTTGTTCACCCTTAAATGTTACAAGATGAAGACAAGT  750

seq1  TGGGAAGTGAGGAGATATTATTGTGTACCACATTCATTGAGACAGAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGTGAGGAGATATTATTGTGTACCACATTCATTGAGACAGAAATA  800

seq1  ATCCATTTCAAAAGGAAACTATTTAAGGTCTTTAATGCAGTCCTCAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATCCATTTCAAAAGGAAACTATTTAAGGTCTTTAATGCAGTCCTC-AAAT  849

seq1  ATCTAATAAAACTGGTAACA-TTCTGTATATTTAATTCAAATGAGCCAAT  899
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATCTAATAAAACTGGTAACATTTCTGTATATTTAATTCAAATGAGCCAAT  899

seq1  TGAGAAAAATTATACTTAAAAGAATATCTGGCAAACTGAGCCACCCAGAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAAATTATACTTAAAAGAATATCTGGCAAACTGAGCCACCCAGAC  949

seq1  AGCATATTCTTTATCCTATAAATATGCTTACAGATGTTAAGTGTGCTTCG  999
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGCATATTCTTTATCCTATAAATATGCTTACAGATG-TAAGTGTGCTTCG  998

seq1  AGTATTCAGTAATAATAATTCTTC-TCAAATGCTT-GGTTCACATTATAG  1047
      ||||||||||||| |||||||||| |||||||||| ||||||||||||||
seq2  AGTATTCAGTAAT-ATAATTCTTCTTCAAATGCTTGGGTTCACATTATAG  1047

seq1  GATAACAACTGATC-ATTATTTCCC-ATTTATTAAACGAAAGTCCTATAG  1095
      ||| |||||||||| |||||||||| ||||||||||||||||||||||||
seq2  GAT-ACAACTGATCAATTATTTCCCAATTTATTAAACGAAAGTCCTATAG  1096

seq1  GTCTCTG--AAAAATGCTGACC-GTTGATACATATTACAAG-ACATTGTG  1141
      |||||||  ||||||||||||| |||||||||||||||||| |||||| |
seq2  GTCTCTGGAAAAAATGCTGACCGGTTGATACATATTACAAGAACATTGGG  1146

seq1  GTGTA-CTCCACTCTACCGTAAGGAATAAAATAGATTTC-CATTCTTTTC  1189
      |  || |||||||||  ||||| |||||||||||||  |  || ||||||
seq2  GGTTACCTCCACTCTCACGTAA-GAATAAAATAGATGCCATATCCTTTTC  1195

seq1  TT  1191
      ||
seq2  TT  1197