BAC Information

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BAC

Clone NameB6Ng01-074O07
Chromosome4 (Build37)
Map Location 138,794,989 - 138,928,514
singlet/doubletdoublet
Overlap geneCapzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik
Upstream geneHp1bp3, Kif17, Ddost, Pink1, Cda, LOC625638, LOC625646, 0610009K11Rik, Camk2n1, LOC100040618, 4931403E03Rik, Ubxd3, Pla2g2c, Pla2g2f, Pla2g2d, Pla2g5, Pla2g2a, Pla2g2e, Otud3, Rnf186, Tmco4, Htr6, LOC665683, Nbl1, 2310028O11Rik, Hspe1-ps4, 9530077C14Rik
Downstream geneZubr1, C79267, Aldh4a1, Tas1r2, Pax7, Gm1667, Klhdc7a, Igsf21, LOC100040728
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074O07.bB6Ng01-074O07.g
ACCDH891614DH891615
length1,151223
definitionDH891614|Mus musculus domesticus DNA, BAC clone: B6Ng01-074O07, 5' end.DH891615|Mus musculus domesticus DNA, BAC clone: B6Ng01-074O07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,794,989 - 138,796,145)(138,928,292 - 138,928,514)
sequence
gaattcaaaacacaggaaacggttcctctcccaggccacaccccacctct
gggctctgagctgcttcctacagagaagatgagtttcatatggtggtctt
actctgagtccatctgtgttggtaaagcccacgatacacattgattataa
agctaattattatgacccctttcccgacttaccttgctttagtttctaga
agcttgcatttgggccacacctctgcaggcatccacaaaggtagctaacc
cagacccccacgctgggtgagcttcctcagccagccccagaccagcagtg
tcctttctagtctgaaaggtttaacaacaaaaagttttattacatctgtt
tttaaagtattcagctctttttgtaaactttttaaaatttaaacataaaa
taatgggctttaaaacgatgctatggattagctggcaatgaggtactgtt
tgaaaatattaaaatactggacattgtaaagccacaggaataattgaaat
ctgcccccaggaggccttcagtttacctaaatgatttaatggggctctgg
agccaagtctgctttttccattgcgtcccatgtcttcctggatgtgaagc
aatgaggcatccctgaaagcaggggttttcaaccgttcatctgctctgct
catttactttgattttgttgttggggctgagaacattctcaccaggaaaa
caattcaataggaggagatttccatcaatcccagataaaactcccccagc
agcctggaagtccccagtgcaacagtctgtttttagggcccgaagctcca
gctgtgagcaggtgtgtgagacaaatccaggctgataggaggggatgtga
acaggaattgagggagaccctcagatgggggcttcagagctaagtagctc
tgtgagagagccagccacagtggctcatgctgggacttgagagagagtgg
gtatagaagaaataatcttagggtgccggtgtgcacatacacttatagac
atgcataactacccaaacccatcccatattacccatgcatgctagtttct
cttagggagccgaagaaacttgaagttgcatgattgttccatccacacct
cctgggtattgtgtgctctgcccagtgcatcttgggaggttgactttttc
t
caggacagccagggctatgtggagagaccctatctcaaaaacaaacaaac
caaaaatcaagatgctgagcattcatgtggggggaggcgggaagattagg
agttggaggccaccttgagcaatatgagatcctgtctcaaataaagaatg
acatcaagagtcaggcacagaaagacgtttcactttctctcatacgtgtg
tgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_138794989_138796145
seq2: B6Ng01-074O07.b_43_1193

seq1  GAATTCAAAACACAGGAAACGGTTCCTCTCCCAGGCCACACCCCACCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACACAGGAAACGGTTCCTCTCCCAGGCCACACCCCACCTCT  50

seq1  GGGCTCTGAGCTGCTTCCTACAGAGAAGATGAGTTTCATATGGTGGTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCTGAGCTGCTTCCTACAGAGAAGATGAGTTTCATATGGTGGTCTT  100

seq1  ACTCTGAGTCCATCTGTGTTGGTAAAGCCCACGATACACATTGATTATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAGTCCATCTGTGTTGGTAAAGCCCACGATACACATTGATTATAA  150

seq1  AGCTAATTATTATGACCCCTTTCCCGACTTACCTTGCTTTAGTTTCTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAATTATTATGACCCCTTTCCCGACTTACCTTGCTTTAGTTTCTAGA  200

seq1  AGCTTGCATTTGGGCCACACCTCTGCAGGCATCCACAAAGGTAGCTAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCATTTGGGCCACACCTCTGCAGGCATCCACAAAGGTAGCTAACC  250

seq1  CAGACCCCCACGCTGGGTGAGCTTCCTCAGCCAGCCCCAGACCAGCAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCCCCACGCTGGGTGAGCTTCCTCAGCCAGCCCCAGACCAGCAGTG  300

seq1  TCCTTTCTAGTCTGAAAGGTTTAACAACAAAAAGTTTTATTACATCTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTAGTCTGAAAGGTTTAACAACAAAAAGTTTTATTACATCTGTT  350

seq1  TTTAAAGTATTCAGCTCTTTTTGTAAACTTTTTAAAATTTAAACATAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGTATTCAGCTCTTTTTGTAAACTTTTTAAAATTTAAACATAAAA  400

seq1  TAATGGGCTTTAAAACGATGCTATGGATTAGCTGGCAATGAGGTACTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGGCTTTAAAACGATGCTATGGATTAGCTGGCAATGAGGTACTGTT  450

seq1  TGAAAATATTAAAATACTGGACATTGTAAAGCCACAGGAATAATTGAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATATTAAAATACTGGACATTGTAAAGCCACAGGAATAATTGAAAT  500

seq1  CTGCCCCCAGGAGGCCTTCAGTTTACCTAAATGATTTAATGGGGCTCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCCAGGAGGCCTTCAGTTTACCTAAATGATTTAATGGGGCTCTGG  550

seq1  AGCCAAGTCTGCTTTTTCCATTGCGTCCCATGTCTTCCTGGATGTGAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGTCTGCTTTTTCCATTGCGTCCCATGTCTTCCTGGATGTGAAGC  600

seq1  AATGAGGCATCCCTGAAAGCAGGGGTTTTCAACCGTTCATCTGCTCTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGCATCCCTGAAAGCAGGGGTTTTCAACCGTTCATCTGCTCTGCT  650

seq1  CATTTACTTTGATTTTGTTGTTGGGGCTGAGAACATTCTCACCAGGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACTTTGATTTTGTTGTTGGGGCTGAGAACATTCTCACCAGGAAAA  700

seq1  CAATTCAATAGGAGGAGATTTCCATCAATCCCAGATAAAACTCCCCCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCAATAGGAGGAGATTTCCATCAATCCCAGATAAAACTCCCCCAGC  750

seq1  AGCCTGGAAGTCCCCAGTGCAACAGTCTGTTTTTAGGGCCCGAAGCTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGAAGTCCCCAGTGCAACAGTCTGTTTTTAGGGCCCGAAGCTCCA  800

seq1  GCTGTGAGCAGGTGTGTGAGACAAATCCAGGCTGATAGGAGGGGATGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGAGCAGGTGTGTGAGACAAATCCAGGCTGATAGGAGGGGATGTGA  850

seq1  ACAGGAATTGAGGGAGACCCTCAGGATGGGGGCTTCAGGAGCTAAGTAGC  900
      ||||||||||||||||||||||| ||||||||||||| ||||||||||||
seq2  ACAGGAATTGAGGGAGACCCTCA-GATGGGGGCTTCA-GAGCTAAGTAGC  898

seq1  TCTGTGAGAGAGCCAGCCACAGGTGGCTCATGCT-GGACTTGAAGAGAGA  949
      ||||||||||||||||||||| |||||||||||| ||||||| |||||||
seq2  TCTGTGAGAGAGCCAGCCACA-GTGGCTCATGCTGGGACTTG-AGAGAGA  946

seq1  GTGGGTATAGAAGAGATAATCTTAGGGTGCCGGTGTGCACATACACATAT  999
      |||||||||||||| ||||||||||||||||||||||||||||||| |||
seq2  GTGGGTATAGAAGAAATAATCTTAGGGTGCCGGTGTGCACATACACTTAT  996

seq1  AGACATGCATACATACACAAACACATACACATA-TACACATGCATGCTAG  1048
      |||||||||||  ||| ||||| ||| | |||| ||| ||||||||||||
seq2  AGACATGCATAACTACCCAAACCCAT-CCCATATTACCCATGCATGCTAG  1045

seq1  TTTCTC-TAGGGAGCCAGAGAAACTTGAAGTTGCAGTGATTGTCCCATCC  1097
      |||||| |||||||||  ||||||||||||||||| ||||||| ||||||
seq2  TTTCTCTTAGGGAGCCGAAGAAACTTGAAGTTGCA-TGATTGTTCCATCC  1094

seq1  ACCACTCTCTGGATATTGTGTGCTCTGCCAAGTGCACTCTGGGAAGTGTT  1147
      ||  ||| |||| |||||||||||||||| |||||| ||| || || |||
seq2  ACACCTC-CTGGGTATTGTGTGCTCTGCCCAGTGCA-TCTTGGGAG-GTT  1141

seq1  GACTTTTTCT  1157
      ||||||||||
seq2  GACTTTTTCT  1151

seq1: chr4_138928292_138928514
seq2: B6Ng01-074O07.g_73_295 (reverse)

seq1  ACACACACACACACACACACACACACACGTATGAGAGAAAGTGAAACGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACGTATGAGAGAAAGTGAAACGTC  50

seq1  TTTCTGTGCCTGACTCTTGATGTCATTCTTTATTTGAGACAGGATCTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGCCTGACTCTTGATGTCATTCTTTATTTGAGACAGGATCTCAT  100

seq1  ATTGCTCAAGGTGGCCTCCAACTCCTAATCTTCCCGCCTCCCCCCACATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCAAGGTGGCCTCCAACTCCTAATCTTCCCGCCTCCCCCCACATG  150

seq1  AATGCTCAGCATCTTGATTTTTGGTTTGTTTGTTTTTGAGATAGGGTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTCAGCATCTTGATTTTTGGTTTGTTTGTTTTTGAGATAGGGTCTC  200

seq1  TCCACATAGCCCTGGCTGTCCTG  223
      |||||||||||||||||||||||
seq2  TCCACATAGCCCTGGCTGTCCTG  223